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Simon Michaeli

@michaelilab.bsky.social
322 followers 377 following 109 posts

Plant and cell biologist. Interested in 🔬 organelles, membrane trafficking, autophagy, 🌿🍂 senescence, 🍑 ripening, learning, teaching and much more 🪐 www.michaelilab.com

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Reposted by Simon Michaeli
Suckjoon Jun’s lab at UCSD @junlab.bsky.social · 28/09/2026
1/5 Do you use GFP to measure protein abundance? Be very careful. Our new bioRxiv preprint shows that, under translation inhibition, fluorescence can stop tracking how much reporter protein is actually there. Please share widely.
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Angelina Gross @angegross.bsky.social · 20/09/2026
Looking forward to fantastic science at the IPPC and some nice croissant in Strasbourg 🥐
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Frederica Theodoulou @freddietheodoulou.bsky.social · 20/09/2026
Looking forward to hearing the latest plant #proteostasis research next month in Strasbourg! 🌱 plantscience
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plantproteostasis.bsky.social @plantproteostasis.bsky.social · 19/09/2026
Hello, Proteostasis Community!🌱 We’re excited to finally share with you the final program of our conference!🎉 Join us in the charming city of Strasbourg from October 14th to 16th for three days of exciting science and inspiring discussions! 🧬 🧪 Stay tuned for more updates!
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Omri Finkel עמרי عُمري @finkel-lab.bsky.social · 17/09/2026
Michal Breker and I started our labs around the same time. Michal studies Chlamydomonas, and I plant microbiota. We joined forces to see how our bugs interact. This led us down a long and winding road, with 3 amazing PhDs and help from many friends. This is the first product of this collaboration.
biorxiv.org
Conserved inhibitory mechanisms of root-associated bacteria towards Arabidopsis thaliana and Chlamydomonas reinhardtii
Soil bacteria colonize plants without causing visible disease, yet many suppress host growth. The prevalence and evolutionary reach of this cryptic inhibition are unknown, because phenotyping hundreds...
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Baukje Hoogenberg @baukjeje.bsky.social · 11/09/2026
Do you want to label the nuclear envelope? Do you work on a non-model species? Try Concanavalin A! We tested ConA on various species across the eukaryotic tree and find it is a very useful ExM-compatible marker for the NE and ER. Read all about it in our preprint: www.biorxiv.org/content/10.6...
biorxiv.org
Concanavalin A as a pan-eukaryotic nuclear envelope marker for expansion microscopy
Across eukaryotes, the nuclear envelope exhibits distinct remodelling strategies during mitosis: complete breakdown (open mitosis), partial disruption (intermediate), or full retention (closed). Howev...
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Reposted by Simon Michaeli
Gautier Langin @glangin.bsky.social · 11/09/2026
Preprint Alert! 🚨 Have you ever wondered how highly conserved molecular complexes adapted to ever changing cellular environments? Thrilled to show our work on 26S proteasome evolution in the green lineage. 🌱🧬👇 www.biorxiv.org/content/10.6... A thread🧵
biorxiv.org
Gene repertoire expansion and cis-regulatory diversification shaped 26S proteasome evolution within a proteostasis-centered network
The 26S proteasome is essential for proteostasis and constitutes one of the most conserved molecular machineries in eukaryotes. Its homeostasis is maintained by a mechanistically conserved feedback lo...
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Şuayb Üstün @suaybuestuen.bsky.social · 11/09/2026
Think the proteasome & its regulation is highly conserved? Think again🔄 Our new preprint (🧵 by lead author @glangin.bsky.social 👇) reveals how gene expansion, regulatory diversification & stress-responsive specialization shaped the evolution of the proteasome in 🌱 www.biorxiv.org/content/10.6...
biorxiv.org
Gene repertoire expansion and cis-regulatory diversification shaped 26S proteasome evolution within a proteostasis-centered network
The 26S proteasome is essential for proteostasis and constitutes one of the most conserved molecular machineries in eukaryotes. Its homeostasis is maintained by a mechanistically conserved feedback lo...
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Mary Williams @PlantTeaching @plantteaching.bsky.social · 28/08/2026
Plant Science Research Weekly: Aug 28, 2026 plantae.org/plant-scienc... Review: Evolution of plant cell types Review: Shuttling genes for better breeds A new tool to understand proteins with intrinsically disordered regions Generating giant starch granules Not all Col-0 is the same! (1/2)
Eukaryotic phylogeny focused on plants emphasizing elements of their body plan.
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Prof. Stefan Rahmstorf @rahmstorf.bsky.social · 26/07/2026
My time lapse of the Gironde #fire near Bordeaux, viewed on Friday afternoon from about 20 km distance. One minute compressed into 5 seconds. #GlobalHeating
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Simon Michaeli @michaelilab.bsky.social · 26/07/2026
#SundayMorning
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Simon Michaeli @michaelilab.bsky.social · 20/07/2026
Yammy...
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Simon Michaeli @michaelilab.bsky.social · 17/07/2026
Every lab needs its own coffee ☕ place
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Reposted by Simon Michaeli
Stella Hurtley @smhsci.bsky.social · 26/06/2026
Take a look at this new paper in @science.org Reversible suppression of autophagy in a mouse model reveals neuronal resilience | Science www.science.org/doi/10.1126/...
science.org
Reversible suppression of autophagy in a mouse model reveals neuronal resilience
Impairments in intracellular quality-control mechanisms, including autophagy, affect neuronal integrity and function. Despite numerous studies aimed at slowing neuronal deterioration, it remains uncle...
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Şuayb Üstün @suaybuestuen.bsky.social · 26/06/2026
After 2 months of hard work by @shanshuo.bsky.social with huge support by @manuelgonzalezfuen.bsky.social,help by @nico-slz.bsky.social & a bit myself (😅) we did "finalise" our paper & are finally "𝘶𝘯𝘥𝘦𝘳 𝘳𝘦𝘷𝘪𝘦𝘸" 🤞 Here is the last version of our paper: www.biorxiv.org/content/10.6... #openscience
biorxiv.org
Autophagy acts as a spatial organizer of cell-type-specific plant immunity
Effective plant immunity requires precise spatial coordination of immune responses across cell-types to restrict pathogens while preventing tissue damage, yet the intracellular pathways that organize ...
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Simon Michaeli @michaelilab.bsky.social · 25/06/2026
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Alex Martiniere @alexmartiniere.bsky.social · 23/06/2026
Our paper is out !!! NADPH oxidases and aquaporins within membrane nanodomains form a functional unit for ROS signaling. Great work by arthur-poitout.bsky.social and amazing collaborator jbfiche.bsky.social, Jose Ugalde, A Meyer yvonjaillais.bsky.social! www.pnas.org/doi/10.1073/pnas.2529740123
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Silvia Ramundo @sramundo.bsky.social · 24/06/2026
1/7 New preprint: we found that Chlamydomonas carries a giant and unexpectedly elaborate chloroplast RNA polymerase with 12 previously unknown subunits, overturning the idea that the complexity of this organellar enzyme emerged during plant terrestrialization! www.biorxiv.org/content/10.6...
biorxiv.org
The structure of a 2-MDa chloroplast RNA polymerase reveals unexpected evolutionary complexity
Transcription in chloroplasts depends on the Plastid-Encoded RNA polymerase (PEP), a bacterial-derived enzyme whose catalytic core remains encoded by the highly reduced genome inherited from the cyano...
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Simon Michaeli @michaelilab.bsky.social · 19/06/2026
It was pure pleasure listening to these #plantscience giants, one after the other, in an even organised by @volcaniinstitute.bsky.social and @hebrewuniversity.bsky.social.
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Reese Richardson @reeserichardson.bsky.social · 05/06/2026
The Thermo Fisher situation keeps getting worse. We've now collected 450+ problematic images presented as verification data in TF's antibody catalog. This includes: 🖌️ Dozens more images with duplications or painting 🖨️ Hundreds of blots that all share the same background (behold slideshow below)
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Diana Gómez De La Cruz @dianagdlc.bsky.social · 05/06/2026
So proud to see this story finally out!🎉 We added new data since our previous preprint—transgenic barley plants with an engineered immune receptor that fights off two fungal pathogens at once. Short 🧵 and link to the original preprint thread on X👇 www.science.org/doi/10.1126/...
science.org
Molecular mimicry of a pathogen virulence target by a plant immune receptor
Plants and animals respond to pathogen attack by mounting innate immune responses that require intracellular nucleotide-binding leucine-rich repeat (NLR) proteins. These immune receptors detect pathog...
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Etienne Bucher 🌾🧬🇪🇺 @plantepigenetics.ch · 05/06/2026
We just published our new paper about an active Helitron transposon in wheat 🌾🧬 We found that it can be mobilised by heat stress when DNA methylation is reduced. We document its full lifecycle: RNA -> circular DNA -> integration www.nature.com/articles/s41... #TEsky
nature.com
An active Helitron transposon family in wheat - Nature Plants
Helitrons are a recently identified category of transposons. This study reveals that heat stress combined with reduced DNA methylation can mobilize a Helitron family in wheat. Its mobilization is gene...
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UU Plants @uuplants.bsky.social · 05/06/2026
Fascination of Plants celebration is here! 🌱 Check out all 8 posters of our exhibition through this website. fopd-utrecht.nl/en/exhibitio... 🌱 Can plant research also have other purposes? See what UU Plant researchers honestly think! #plantscience
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Marion Clavel @thevirusmc.bsky.social · 29/05/2026
Our work is out now! (www.science.org/doi/10.1126/...). We discover a selective autophagy pathway that protects plants from the mess caused by RNA viruses. Intrigued? Follow the spaghetti trail for a summary of our findings🧵-->
science.org
Selective autophagy fine-tunes plant immunity to promote cell survival during viral infection
RNA viruses co-opt host endomembranes to form replication complexes, often triggering cellular stress and immune responses. Here, we show that Arabidopsis thaliana activates selective autophagy to res...
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Yasin Dagdas @plantophagy.bsky.social · 23/05/2026
One of my role models in academia, combining brilliance with humility-Noboru Mizushima, & I like him even more now ❤️ “If I was given the chance to repeat my research career, I think I would choose to study plant biology.” journals.biologists.com/jcs/article/...
journals.biologists.com
Interview with Noboru Mizushima – President of the Japan Society for Cell Biology
Noboru Mizushima is Professor of Biochemistry and Molecular Biology at the University of Tokyo, Japan, where he runs a laboratory studying the mechanisms and physiological functions of autophagy and o...
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Liam Elliott @liamelliottplants.bsky.social · 16/05/2026
A long road with this one, with many questions still to answer, but out now in @embojournal.org! RAB-A2a, Kin12s and TIO interact to coordinate membrane-phragmoplast dynamics during cytokinesis. Big thanks to @ckirchhelle.bsky.social for letting me explore this! link.springer.com/article/10.1...
link.springer.com
A Rab/Kinesin-12/kinase module couples vesicle delivery and phragmoplast dynamics during plant cell cytokinesis - The EMBO Journal
Cytokinesis is a key process in the development of multicellular organisms, through both formative and proliferative divisions. In land plants, successful cytokinesis requires precise targeting of Gol...
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Marhavy lab @pmarhavy.bsky.social · 16/05/2026
Excited to share our latest piece in Trends in Plant Science! 🌱🔬 www.sciencedirect.com/science/arti... We highlight how single-cell laser ablation reveals plant development, wound responses, and root defenses. @TrendsPlantSci @KAUST_BESE @ESNematologists @umeaplantscie ncecentre.se #PlantScience
sciencedirect.com
Single-cell laser ablation uncovers the blueprint of plant development
Understanding how positional information within plant tissues shapes developmental programs in real time has long remained a challenge due to technica…
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Reposted by Simon Michaeli
Simon Michaeli @michaelilab.bsky.social · 08/05/2026
For this #FluorescenceFriday, beautiful round tonoplast memebranes engulfing chloroplasts (magenta) and a stomata (cyan) sends a kiss. Image taken by talented postdoc Hala Khamesa-Israelov. #PlantScience
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Yves Van de Peer @yvdp.bsky.social · 08/05/2026
The rise of polyploids during environmental upheaval: Cell www.cell.com/cell/fulltex...
cell.com
The rise of polyploids during environmental upheaval
From the dating of 132 ancient whole-genome duplication events across 470 angiosperms, paleopolyploidization events cluster around pivotal periods of environmental upheaval and extinction, notably the...
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Simon Michaeli @michaelilab.bsky.social · 08/05/2026
For this #FluorescenceFriday, beautiful round tonoplast memebranes engulfing chloroplasts (magenta) and a stomata (cyan) sends a kiss. Image taken by talented postdoc Hala Khamesa-Israelov. #PlantScience
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Reposted by Simon Michaeli
Şuayb Üstün @suaybuestuen.bsky.social · 30/04/2026
Thrilled to introduce our next act 🎭 in @cp-molcell.bsky.social sciencedirect.com/science/arti... led by @glangin.bsky.social We uncover how proteotoxic stress is integrated across compartments, controlling proteasome activation ⚖️ vs photosynthesis repression 🌱 🧵(1/6) #proteostasis
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Şuayb Üstün @suaybuestuen.bsky.social · 24/04/2026
🚨 Paper out now in #ScienceAdvances @science.org 🌱🦠 Pathogens don’t just target protein degradation—they also hijack host translation. "Bacteria use P-body condensates to attenuate host translation during infection" ⚖️♻️ led by @manuelgonzalezfuen.bsky.social www.science.org/doi/10.1126/...
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Justin Walley @justinwwalley.bsky.social · 23/04/2026
Another paper hot off the press! We profiled protein abundance, acetylation, and phosphorylation in rice infected with Magnaporthe oryzae. Awesome work led by @pri-auler.bsky.social. It was great hosting her in my lab for a year long post-doc internship!!! onlinelibrary.wiley.com/doi/10.1111/...
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Nitzan Shabek @shabeklab.bsky.social · 22/04/2026
🔥our latest study is now online @natcomms.nature.com we found that the salicylic acid catabolic enzymes DMR6/DLO1 are controlled by the ubiquitin system. SA modulates their turnover, revealing a regulatory circuit linking hormone metabolism to immune balance. www.nature.com/articles/s41...
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Harmit Singh Malik @harmitmalik.bsky.social · 23/04/2026
Beautiful creative work and a great 🧵 Kudos to all involved in this nice work 🧪
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Chenxin Li, PhD @chenxinli2.bsky.social · 21/04/2026
Mammalian-like steroidogenesis in plants gives rise to endocrine-mimetic cardenolides #PlantScience #SecMet From: www.science.org/doi/full/10....
science.org
Mammalian-like steroidogenesis in plants gives rise to endocrine-mimetic cardenolides
Plants carry out mammalian-like steroidogenesis that generates endocrine-mimetic cardenolides.
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Simon Michaeli @michaelilab.bsky.social · 16/04/2026
Congrats @sheilaroitman.bsky.social et al!
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eleazarrodriguez.bsky.social @eleazarrodriguez.bsky.social · 13/04/2026
jobportal.ku.dk/administrati... We are soon to be headless.... So come be our new boss in lovely Copenhagen and lead a department with research interests from genes to ecosystems, and everything alive in between.
jobportal.ku.dk
Head of Department, Department of Biology
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Şuayb Üstün @suaybuestuen.bsky.social · 09/04/2026
Preprint alert 🚨 (1/10) 🧵 𝘈𝘶𝘵𝘰𝘱𝘩𝘢𝘨𝘺 𝘪𝘴 𝘢 𝘱𝘢𝘳𝘢𝘥𝘰𝘹 𝘪𝘯 𝘱𝘭𝘢𝘯𝘵 𝘪𝘮𝘮𝘶𝘯𝘪𝘵𝘺: It can promote resistance, susceptibility, or restrict cell death 🤯 So what is its actual role? We show it acts as a spatial organizer of immunity across cell types 🌱🦠 #proteostasis www.biorxiv.org/content/10.6...
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Science Magazine @science.org · 09/04/2026
This tiny, newborn caterpillar buzzes to defend its territory. The 2-millimeter-long bug is among the smallest animals ever observed performing territorial displays. Learn more: scim.ag/4twrFtr #ScienceMagArchives
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Diane Bassham @dianebassham.bsky.social · 08/04/2026
Ping is hiring for her new lab.
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Simon Michaeli @michaelilab.bsky.social · 08/04/2026
I'd like to believe this won't affect my personality #Reviewer2
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Nitzan Shabek @shabeklab.bsky.social · 07/04/2026
Excited to share our latest review on ubiquitin ligases in plant immunity onlinelibrary.wiley.com/doi/epdf/10....
onlinelibrary.wiley.com
Ubiquitin ligases in plant immunity: structural mechanisms and signaling
The ubiquitin system is a central regulator of plant immunity, with E3 ligases conferring substrate specificity across diverse signaling pathways. This review synthesizes structural and mechanistic i...
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COS Heidelberg @cosheidelberg.bsky.social · 07/04/2026
New publication from Markus Wirtz and colleagues on N-terminal protein acetylation: www.nature.com/articles/s41...
nature.com
The ribosome-associated N-terminal acetyltransferase B coordinates global proteostasis and autophagy in plants by creating Ac/N-degrons - Nature Communications
Protein N-terminal acetylation profoundly influences protein fate. Here, the authors establish NatB as a central regulator of the interplay between ubiquitin–proteasome system and autophagy, and highl...
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Arif Ashraf @aribidopsis.bsky.social · 11/03/2026
🔬🍀🎉 I am happy and excited to share that graduate student, @ohazel.bsky.social Olivia's first author research article is published now @newphyt.bsky.social We are grateful to editor, reviewers, and @newphyt.bsky.social to help us to improve the story nph.onlinelibrary.wiley.com/doi/10.1111/...
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Science Magazine @science.org · 06/04/2026
Researchers in #ScienceAdvances have reconstructed the full biosynthetic pathways of five natural psychedelics in one plant system. scim.ag/3PLLIFP
scim.ag
Complete biosynthesis of psychedelic tryptamines from three kingdoms in plants
Tryptamine psychedelics from plants, fungi, and toads are produced in planta through cross-kingdom pathway reconstruction.
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André Nadler @nadlerlab.bsky.social · 23/03/2026
It’s incredibly hard to study lipids in biological membranes on the nanoscale. You need near-perfect information on both membrane ultrastructure and lipid density. Lipid-CLEM, now out in @natcellbio.nature.com brought to you by @mathilda95.bsky.social changes that: www.nature.com/articles/s41...
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Mathilda Lennartz @mathilda95.bsky.social · 23/03/2026
I am extremely excited that my first first-author paper from my PhD is finally out 😆!! We developed a new CLEM workflow to measure lipid densities at the nanoscale. So if you are into lipids and super-resolution imaging approaches, this one is for you: www.nature.com/articles/s41...
nature.com
Visualizing suborganellar lipid distribution using correlative light and electron microscopy - Nature Cell Biology
Lennartz et al. introduce a correlative light and electron microscopy workflow, Lipid-CLEM, combining near-native lipid probes and on-section labelling via click chemistry. Lipid-CLEM quantitatively a...
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Simon Michaeli @michaelilab.bsky.social · 17/03/2026
With everything going on, I can always count on grant writing to serve as an island of stability...
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Simon Michaeli @michaelilab.bsky.social · 16/03/2026
Roots and the Meaning of Life www.themarginalian.org/2026/03/15/r...
themarginalian.org
Roots and the Meaning of Life
They are so far out of sight for us, creatures of the upper world, that we don’t readily think of them. But as soon as we do, as soon as we plunge the mind into the cold dark hummus to which …
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