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Max Stammnitz

@maxstammnitz.bsky.social
328 followers 250 following 23 posts

Incoming PI at @crg.eu @andorrari.bsky.social, previously PhD at Cambridge University Genomics | Chemical Biology | Mutational Scanning | Evolution 🧬🧪🧑‍💻⛰️🌊 www.crg.eu/en/programmes-groups/independent-fellow/stammnitz-lab

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Max Stammnitz @maxstammnitz.bsky.social · 08/10/2026
Anti(a)biotic resistance evolution
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Nick Polizzi @nickpolizzi.bsky.social · 06/10/2026
I have postdoc positions available to lead two new exciting projects! One is on in situ protein sequencing (collab with Ed Boyden at MIT) and the other is on modeling cryptic pockets for drug discovery (collab with Scripps and MGH). Reach out if interested! Details below
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Megan Dennis @mydennis.bsky.social · 14/02/2025
A little late on this, but finally got around to reading this review on genome assembly. Found it both comprehensive and accessible. Made it recommended reading for members of the lab and the genomics grad students I am teaching. www.nature.com/articles/s41...
nature.com
Genome assembly in the telomere-to-telomere era - Nature Reviews Genetics
In this Review, Li and Durbin discuss how to generate telomere-to-telomere assemblies for large haploid or diploid genomes using currently available data types and algorithms, and outline remaining ch...
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Centre de Regulació Genòmica (CRG) @crg.eu · 21/09/2026
The CRG's 2027 PhD call is now open! We have multiple, fully-funded positions across fifteen different research groups. Successful candidates will spend four years pursuing cutting-edge questions at our labs in Barcelona. Deadline is 22 November. www.crg.eu/en/content/t...
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Thomä lab @labthoma.bsky.social · 13/08/2026
Congrats to Pius, Shuhao, and the team! Check out our latest publication: Molecular glue degraders (MGDs) like lenalidomide have transformed multiple myeloma treatment by inducing degradation of non-native substrates via the CRL4CRBN E3 ligase—but which proteins can they actually reach?
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Ezequiel Galpern @eag91.bsky.social · 05/08/2026
1/ New preprint! with @solersanchisx.bsky.social @cwjpugh.bsky.social @federicobilleci.bsky.social @jonnyfrazer.bsky.social and Mafalda Dias, we introduce a scalable framework to improve stability prediction and separate folding from functional constraints. www.biorxiv.org/content/10.6...
biorxiv.org
Blending physics-based and inverse folding models to disentangle variant effects on stability and function
Protein sequences are constrained not only by the need to fold into stable structures, but also by specific functional requirements imposed by natural selection. Yet predictions of how amino-acid chan...
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Arnau Sebé-Pedrós @arnausebe.bsky.social · 03/08/2026
Happy to share the final version of our study on the evolution of chromatin states across eukaryotes, out today in @natgenet.nature.com Led by @crisnava.bsky.social and @seanamontgomery.bsky.social www.nature.com/articles/s41... Some highlights below
nature.com
Diversity and evolution of chromatin regulatory states across eukaryotes - Nature Genetics
This study introduces iChIP2, a low-input chromatin immunoprecipitation followed by sequencing method that profiles histone post-translational modifications (hPTMs) simultaneously across diverse eukar...
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Max Stammnitz @maxstammnitz.bsky.social · 22/07/2026
A nice companion article by the @carlzimmer.com www.nytimes.com/2026/07/22/s...
nytimes.com
Deep in This Lake, a Contagious Cancer Is Spreading (Gift Article)
Transmissible tumors have been reported in a handful of animal species, but never before among fish. Is it possible in humans?
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Max Stammnitz @maxstammnitz.bsky.social · 22/07/2026
3. Bivalve transmissible neoplasia (BTN), of which there are more than a dozen known lineages that affect different species of marine molluscs virology.ws/2015/04/09/t...
virology.ws
A transmissible cancer of soft-shell clams | Virology Blog
A leukemia-like cancer is killing soft-shell clams along the east coast of North America. The cancer is transmitted between animals in the ocean, and appear ...
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Max Stammnitz @maxstammnitz.bsky.social · 22/07/2026
2. Tasmanian devil facial tumours (DFTs), of which there are two independent lineages www.the-scientist.com/a-hell-of-a-...
the-scientist.com
A Hell of a Disease: Can Science Save the Tasmanian Devil? | The Scientist
A strange, contagious cancer is threatening Tasmanian devils, but researchers’ fight is fueling breakthroughs in science, survival, and hope.
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Max Stammnitz @maxstammnitz.bsky.social · 22/07/2026
Until today, we had known of three different types of contagious cancers in nature: 1. Canine transmissible venereal tumours (CTVT) www.theatlantic.com/science/arch...
theatlantic.com
Thousands of Years Ago, a Dog Gave Rise to an Immortal Entity
The story of CTVT—a contagious cancer that spreads from dog to dog—gets weirder all the time.
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Max Stammnitz @maxstammnitz.bsky.social · 22/07/2026
Wow! A fourth class of transmissible cancers. CONTAGIOUS FISH MELANOMA, discovered in Lake Memphremagog (Vermont / Quebec) 🎣 🧬 😷 www.nature.com/articles/s41... @uvmvermont.bsky.social
nature.com
Brown bullhead catfish melanoma represents a novel transmissible cancer - Nature
Whole-genome sequencing analysis of tumour and matched non-tumour host tissues of the brown bullhead catfish reveals a type of naturally occurring transmissible cancer.
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Max Stammnitz @maxstammnitz.bsky.social · 13/06/2026
Oh wow, the Venus flytrap closure mechanism 🤩🌱! Looks like an awesome starting point for nature-inspired materials design ... www.science.org/doi/10.1126/...
science.org
Fast cell wall softening causes Venus flytrap closure
Plants can move rapidly without muscles, as seen in the Venus flytrap’s snapping lobes—a long-standing puzzle in plant biomechanics. Trap closure involves an elastic instability, but the active mechan...
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Plant Science Spotlight @plant-sci.bsky.social · 09/06/2026
🌱🧬W3 Professorship in Plant Biotechnology at the University of Freiburg The position holder will lead a research program that combines excellent basic research with clear perspectives for biotechnological & societally relevant applications #plantscience #plantscijobs www.nature.com/naturecareer...
nature.com
W3 Professorship for Plant Biotechnology - Freiburg im Breisgau, Baden-Württemberg (DE) job with University of Freiburg (Uni Freiburg) | 12859402
The future position holder will lead an internationally recognized research program that combines excellent basic research with clear perspectives for
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Tae Seok Moon @taeseokmoon.bsky.social · 09/06/2026
And risen star
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Max Stammnitz @maxstammnitz.bsky.social · 07/06/2026
Thanks a lot @jorgetwe.bsky.social, just DM'd you 🙂
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Ricard Solé @ricardsole.bsky.social · 04/06/2026
What if living cells compute in ways that silicon never can? Rather than mimicking computers, the future of biocomputation may lie in harnessing the unique information-processing strategies of evolution. Check this paper by @angelgm.eurosky.social and co. www.sciencedirect.com/science/arti....
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Admirable Women @admirablewomen.bsky.social · 05/06/2026
Molecular biologist & geneticist Susan Lindquist (b. #OTD in 1949) was a pioneer in studying protein folding. Her research demonstrated protein folding errors contribute heavily to neurodegenerative conditions like Alzheimer's & Parkinson's diseases. National Medal of Science in 2010. #WomenInSTEM
This colorful portrait captures pioneering American molecular biologist and geneticist Dr. Susan Lindquist (June 5, 1949 – October 27, 2016), a National Medal of Science recipient who revolutionized our understanding of protein folding, prions, and heat-shock proteins. Facing the camera with a warm, confident smile, her short brown hair frames an engaging, intellectual expression. She wears a structured, dark green textured blazer over a striking, light blue silk scarf patterned with vibrant illustrations of sliced limes, lemons, oranges, and cherries, accented by elegant gold hoop earrings.She stands directly in front of a white dry-erase board covered in hand-drawn, multicolored biochemical pathways and pathways tracking "sterol biosynthesis," "Erg3," "Ergosterol," and "Mutations Azoles" from her famous research into evolutionary adaptations and antifungal resistance using yeast models. The tight composition and bright ambient lighting emphasize a deeply intellectual, creative, and historic mood, celebrating one of the most influential scientific minds of the modern era.
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Centre de Regulació Genòmica (CRG) @crg.eu · 03/06/2026
Congratulations to CRG's @benlehner.bsky.social on receiving the 2026 Premio Rei Jaume I for Biomedical Research. The award recognises his pioneering discoveries on genetic variation, evolution and disease, helping transform our understanding of biology and human health. #genomics #genetics #CRG
Ben Lehner at the CRG
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Bernardo Rodríguez Martín @bernardo-rodriguez.bsky.social · 03/06/2026
📢📢 Job opening between the Bioinformatics Unit and my group (REPBIO) at @crg.eu Interested in contributing to our efforts to leverage long-read sequencing technologies for human genome research? Join us in Barcelona: recruitment.crg.eu/content/jobs... Please repost😊
recruitment.crg.eu
Bioinformatician | CRG Online Recruitment Portal
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Gioia Quarantani @gioia-quarantani.bsky.social · 26/05/2026
1\ Excited to finally share some of my PhD work: OpenSplice! We measured how >590,000 mutations affect exon inclusion across 600 human exons, creating a resource to study splicing regulation, benchmark variant effect predictors, and support variant interpretation.
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bioRxiv Biophysics @biorxiv-biophys.bsky.social · 21/05/2026
Accurate protein stability prediction for small domains using mega-scale experiments www.biorxiv.org/content/10.64898/20…
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Peter Škrinjar @peterskrinjar.bsky.social · 11/05/2026
Now published in NSMB! Paper: doi.org/10.1038/s415... Full PDF: rdcu.be/fhBtI Overview of additions since the preprint👇 (1/5)
doi.org
Evaluating generalization in protein–ligand cofolding methods - Nature Structural & Molecular Biology
This work introduces the Runs N’ Poses dataset for benchmarking deep learning methods on the protein–ligand complex prediction task. It shows that current methods rely on memorization, challenging the...
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Learn Dirt @learndirt.bsky.social · 02/05/2026
🌱 "Don't judge each day by the harvest you reap but by the seeds that you plant" —Robert Louis Stevenson
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Harris Wang @harriswang.bsky.social · 01/05/2026
1/ Excited to share our new paper in Science @science.org: “Toward life with a 19-amino acid alphabet through generative artificial intelligence design.” A great collab w/ Sergey's group @sokrypton.org at MIT @columbiasysbio.bsky.social science.org/doi/10.1126/... 🦠🧬🛠️🖥️💥
science.org
Toward life with a 19–amino acid alphabet through generative artificial intelligence design
Because all known living organisms are made from at least 20 canonical amino acids, the feasibility of life using a more simplified alphabet remains unclear. In this work, we leveraged computational d...
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Ignacio_Rubio-Somoza @ignaciorubiosomoza.bsky.social · 30/04/2026
We are looking for a new Director @cragenomica.bsky.social to help us keep growing and making even cooler science, come join us!, Application details www.cragenomica.es/sites/defaul... please, help us spread the word!
cragenomica.es
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Max Stammnitz @maxstammnitz.bsky.social · 24/04/2026
Also linking to @carlzimmer.com's latest book, of course! carlzimmer.com/books/airbor...
carlzimmer.com
Airborne, Carl Zimmer
Air-Borne: The Hidden History of the Life We Breathe   Order Now The fascinating, untold story of the air we breathe, the hidden life it...
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Max Stammnitz @maxstammnitz.bsky.social · 24/04/2026
Another weekly reminder of the promise of sequencing airborne eDNA. So much to do. So much to learn. 🧬 🌍 🧑‍💻 www.nature.com/articles/d41...
nature.com
The air is full of DNA — here’s what scientists are using it for
Airborne genetic material can be used to paint a picture of ecosystem health, watch for invasive species and even identify humans.
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Max Stammnitz @maxstammnitz.bsky.social · 26/03/2026
... looking forward to re-connect in person next year, slightly jealous of y'all who made it to Melbourne! :)
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Derek Lowe @dereklowe.bsky.social · 23/03/2026
The latest AI/ML tools for co-folding proteins around small molecule ligands can produce impressive results. Until you start looking at them closely.
science.org
AI-Predicting Compound Affinity. We Aren't There Yet.
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Max Stammnitz @maxstammnitz.bsky.social · 20/03/2026
On the uses and misuses of airborne DNA detection 🌬️🌱🧬 www.elperiodico.com/es/ciencia/2... 🇪🇸 with David Duffy @ufresearch.bsky.social in @elperiodico.com
elperiodico.com
Ya es posible extraer ADN humano del aire: riesgo de una vigilancia masiva
Extraer ADN del aire permite detectar patógenos y monitorizar la biodiversidad. Sin embargo,esto puede convertirse en una herramienta de control y los expertos llaman a la regulación del sector.
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ICREA Community @icreacommunity.bsky.social · 19/03/2026
Our warmest congratulations to #ICREAResearcher José Luis Riechmann and team at @cragenomica.bsky.social! They discovered tiny peptides that could be key for flower development, conserved across plant species. 🌿🧪
bsky.app
CRAG (@cragenomica.bsky.social)
Twenty-five years after the sequencing of the human genome, scientists are still uncovering hidden layers of the “book of life”. A team led by CRAG researcher José Luis Riechmann published the first characterization of peptides derived from sORFs during flower development in Arabidopsis thaliana 🌸🔬
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Max Stammnitz @maxstammnitz.bsky.social · 07/03/2026
Very few things in academia are as rewarding as witnessing the progress and growth of your students, their research and discoveries over the years. Such a nice weekend read by @robjohnnoble.bsky.social 🫶 (also: great title!)
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Max Stammnitz @maxstammnitz.bsky.social · 27/02/2026
What a piece of art on L1! Big congrats to you all
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Max Stammnitz @maxstammnitz.bsky.social · 23/02/2026
Wonderful to have David Duffy with us last week! Lots of new biodiversity genomics and eDNA approaches in the making ... 🧬🐢🌦️ @crg.eu @prbb.org @ufresearch.bsky.social
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CRAG @cragenomica.bsky.social · 12/02/2026
🌱 Join us tomorrow for the seminar "Deep mutational scanning of plant hormone receptors" by Maximilian R. Stammnitz (@maxstammnitz.bsky.social) from the Center for Genomic Regulation (@crg.eu) 👀 Don't miss it! 👉 f.mtr.cool/pgnowtoakf
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 20/12/2025
Multidisciplinary training, over time, produces the highest impact people www.science.org/doi/10.1126/...
science.org
Recent discoveries on the acquisition of the highest levels of human performance
Scientists have long debated the origins of exceptional human achievements. This literature review summarizes recent evidence from multiple domains on the acquisition of world-class performance. We re...
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Max Stammnitz @maxstammnitz.bsky.social · 09/10/2025
Congrats @ferriol.bsky.social and co!!
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Gabriela Biló @gabrielabilo1.bsky.social · 23/05/2025
O maior fotógrafo do Brasil e um dos maiores do mundo descansa hoje. Vá em paz, Sebastião Salgado.
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Max Stammnitz @maxstammnitz.bsky.social · 02/06/2025
... so please have a look at our preprint and get in touch if you’d like to learn more, explore and use the data, etc 🙂 AND: definitely also check out @taylor-mighell.bsky.social's fascinating story on GPCRs – with even more receptor dose-response curves! www.biorxiv.org/content/10.1... [7/7]
biorxiv.org
The genetic architecture of G-protein coupled receptor signaling
G-protein coupled receptors (GPCRs) are the most abundant class of human receptors and drug targets. The vast majority of GPCR drugs bind the conserved orthosteric pocket, which can lead to non-specif...
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Max Stammnitz @maxstammnitz.bsky.social · 02/06/2025
Deep mutational scanning is developing really fast. One of the new directions lies in the exploration of larger, more dynamic proteins. Another in the study of small-molecule interactions. Chemically inducible receptors and other glueable dimerisation systems offer us one way forward …

 [6/7]
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Max Stammnitz @maxstammnitz.bsky.social · 02/06/2025
These rich data allow us to fit thousands of dose-response curves. With these we can systematically compare mutants’ key signalling parameters including basal phosphatase binding, hormone sensitivity and maximum response. And there are lots of cool examples & correlations, surprises … 🔎🕵️💚 [5/7]
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Max Stammnitz @maxstammnitz.bsky.social · 02/06/2025
Now what does one get out of this??

 A massive map of position-, amino acid-, and small-molecule concentration-dependent variant effects! [4/7]
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Max Stammnitz @maxstammnitz.bsky.social · 02/06/2025
To better understand this ABA receptor’s genetic encoding, we mutated every position to all 20 amino acids. A glueable protein complementation assay (GluePCA) then allowed us to measure the relative binding strength of each receptor variant vs. phosphatase – at 12 different dosages of ABA. [3/7]
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Max Stammnitz @maxstammnitz.bsky.social · 02/06/2025
PYR/PYL receptors (grey) are key to plant water homeostasis and stress signalling. 💦🌱🌞 Abscisic acid ('ABA', green), is bound through a deep hydrophobic pocket. This triggers the allosteric closure of two loops which generate a new binding interface with response phosphatases (white). 

[2/7]
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Max Stammnitz @maxstammnitz.bsky.social · 02/06/2025
1 plant hormone receptor ☘️ 3,500 mutants, to single-site saturation 🧬 >45,000 binding and abundance measurements 📶 Very happy to present our latest work – where deep mutational scanning meets the world of small molecules.

 www.biorxiv.org/content/10.1...

 With @benlehner.bsky.social [1/7]
biorxiv.org
The genetic architecture of an allosteric hormone receptor
Many proteins function as switches, detecting chemicals and transducing their concentrations into cellular responses. Receptor switches are key to the integration of environmental signals, yet it is n...
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