Reposted by Max StammnitzNick Polizzi @nickpolizzi.bsky.social · 06/10/2026I have postdoc positions available to lead two new exciting projects! One is on in situ protein sequencing (collab with Ed Boyden at MIT) and the other is on modeling cryptic pockets for drug discovery (collab with Scripps and MGH). Reach out if interested! Details below 245
Reposted by Max StammnitzMegan Dennis @mydennis.bsky.social · 14/02/2025A little late on this, but finally got around to reading this review on genome assembly. Found it both comprehensive and accessible. Made it recommended reading for members of the lab and the genomics grad students I am teaching. www.nature.com/articles/s41...nature.comGenome assembly in the telomere-to-telomere era - Nature Reviews GeneticsIn this Review, Li and Durbin discuss how to generate telomere-to-telomere assemblies for large haploid or diploid genomes using currently available data types and algorithms, and outline remaining ch... 1145
Reposted by Max StammnitzCentre de Regulació Genòmica (CRG) @crg.eu · 21/09/2026The CRG's 2027 PhD call is now open! We have multiple, fully-funded positions across fifteen different research groups. Successful candidates will spend four years pursuing cutting-edge questions at our labs in Barcelona. Deadline is 22 November. www.crg.eu/en/content/t... 01013
Reposted by Max StammnitzThomä lab @labthoma.bsky.social · 13/08/2026Congrats to Pius, Shuhao, and the team! Check out our latest publication: Molecular glue degraders (MGDs) like lenalidomide have transformed multiple myeloma treatment by inducing degradation of non-native substrates via the CRL4CRBN E3 ligase—but which proteins can they actually reach? 175
Reposted by Max StammnitzEzequiel Galpern @eag91.bsky.social · 05/08/20261/ New preprint! with @solersanchisx.bsky.social @cwjpugh.bsky.social @federicobilleci.bsky.social @jonnyfrazer.bsky.social and Mafalda Dias, we introduce a scalable framework to improve stability prediction and separate folding from functional constraints. www.biorxiv.org/content/10.6...biorxiv.orgBlending physics-based and inverse folding models to disentangle variant effects on stability and functionProtein sequences are constrained not only by the need to fold into stable structures, but also by specific functional requirements imposed by natural selection. Yet predictions of how amino-acid chan... 1139
Reposted by Max StammnitzArnau Sebé-Pedrós @arnausebe.bsky.social · 03/08/2026Happy to share the final version of our study on the evolution of chromatin states across eukaryotes, out today in @natgenet.nature.com Led by @crisnava.bsky.social and @seanamontgomery.bsky.social www.nature.com/articles/s41... Some highlights belownature.comDiversity and evolution of chromatin regulatory states across eukaryotes - Nature GeneticsThis study introduces iChIP2, a low-input chromatin immunoprecipitation followed by sequencing method that profiles histone post-translational modifications (hPTMs) simultaneously across diverse eukar... 1018481
Max Stammnitz @maxstammnitz.bsky.social · 22/07/2026A nice companion article by the @carlzimmer.com www.nytimes.com/2026/07/22/s...nytimes.comDeep in This Lake, a Contagious Cancer Is Spreading (Gift Article)Transmissible tumors have been reported in a handful of animal species, but never before among fish. Is it possible in humans? 000
Max Stammnitz @maxstammnitz.bsky.social · 22/07/20263. Bivalve transmissible neoplasia (BTN), of which there are more than a dozen known lineages that affect different species of marine molluscs virology.ws/2015/04/09/t...virology.wsA transmissible cancer of soft-shell clams | Virology BlogA leukemia-like cancer is killing soft-shell clams along the east coast of North America. The cancer is transmitted between animals in the ocean, and appear ... 100
Max Stammnitz @maxstammnitz.bsky.social · 22/07/20262. Tasmanian devil facial tumours (DFTs), of which there are two independent lineages www.the-scientist.com/a-hell-of-a-...the-scientist.comA Hell of a Disease: Can Science Save the Tasmanian Devil? | The ScientistA strange, contagious cancer is threatening Tasmanian devils, but researchers’ fight is fueling breakthroughs in science, survival, and hope. 100
Max Stammnitz @maxstammnitz.bsky.social · 22/07/2026Until today, we had known of three different types of contagious cancers in nature: 1. Canine transmissible venereal tumours (CTVT) www.theatlantic.com/science/arch...theatlantic.comThousands of Years Ago, a Dog Gave Rise to an Immortal EntityThe story of CTVT—a contagious cancer that spreads from dog to dog—gets weirder all the time. 100
Max Stammnitz @maxstammnitz.bsky.social · 22/07/2026Wow! A fourth class of transmissible cancers. CONTAGIOUS FISH MELANOMA, discovered in Lake Memphremagog (Vermont / Quebec) 🎣 🧬 😷 www.nature.com/articles/s41... @uvmvermont.bsky.socialnature.comBrown bullhead catfish melanoma represents a novel transmissible cancer - NatureWhole-genome sequencing analysis of tumour and matched non-tumour host tissues of the brown bullhead catfish reveals a type of naturally occurring transmissible cancer. 15125
Max Stammnitz @maxstammnitz.bsky.social · 13/06/2026Oh wow, the Venus flytrap closure mechanism 🤩🌱! Looks like an awesome starting point for nature-inspired materials design ... www.science.org/doi/10.1126/...science.orgFast cell wall softening causes Venus flytrap closurePlants can move rapidly without muscles, as seen in the Venus flytrap’s snapping lobes—a long-standing puzzle in plant biomechanics. Trap closure involves an elastic instability, but the active mechan... 140
Reposted by Max StammnitzPlant Science Spotlight @plant-sci.bsky.social · 09/06/2026🌱🧬W3 Professorship in Plant Biotechnology at the University of Freiburg The position holder will lead a research program that combines excellent basic research with clear perspectives for biotechnological & societally relevant applications #plantscience #plantscijobs www.nature.com/naturecareer...nature.comW3 Professorship for Plant Biotechnology - Freiburg im Breisgau, Baden-Württemberg (DE) job with University of Freiburg (Uni Freiburg) | 12859402The future position holder will lead an internationally recognized research program that combines excellent basic research with clear perspectives for 01614
Max Stammnitz @maxstammnitz.bsky.social · 07/06/2026Thanks a lot @jorgetwe.bsky.social, just DM'd you 🙂 000
Reposted by Max StammnitzRicard Solé @ricardsole.bsky.social · 04/06/2026What if living cells compute in ways that silicon never can? Rather than mimicking computers, the future of biocomputation may lie in harnessing the unique information-processing strategies of evolution. Check this paper by @angelgm.eurosky.social and co. www.sciencedirect.com/science/arti.... 0319
Reposted by Max StammnitzAdmirable Women @admirablewomen.bsky.social · 05/06/2026Molecular biologist & geneticist Susan Lindquist (b. #OTD in 1949) was a pioneer in studying protein folding. Her research demonstrated protein folding errors contribute heavily to neurodegenerative conditions like Alzheimer's & Parkinson's diseases. National Medal of Science in 2010. #WomenInSTEM 8724171
Reposted by Max StammnitzCentre de Regulació Genòmica (CRG) @crg.eu · 03/06/2026Congratulations to CRG's @benlehner.bsky.social on receiving the 2026 Premio Rei Jaume I for Biomedical Research. The award recognises his pioneering discoveries on genetic variation, evolution and disease, helping transform our understanding of biology and human health. #genomics #genetics #CRG 0114
Reposted by Max StammnitzBernardo Rodríguez Martín @bernardo-rodriguez.bsky.social · 03/06/2026📢📢 Job opening between the Bioinformatics Unit and my group (REPBIO) at @crg.eu Interested in contributing to our efforts to leverage long-read sequencing technologies for human genome research? Join us in Barcelona: recruitment.crg.eu/content/jobs... Please repost😊recruitment.crg.euBioinformatician | CRG Online Recruitment Portal 1810
Reposted by Max StammnitzGioia Quarantani @gioia-quarantani.bsky.social · 26/05/20261\ Excited to finally share some of my PhD work: OpenSplice! We measured how >590,000 mutations affect exon inclusion across 600 human exons, creating a resource to study splicing regulation, benchmark variant effect predictors, and support variant interpretation. 12713
Reposted by Max StammnitzbioRxiv Biophysics @biorxiv-biophys.bsky.social · 21/05/2026Accurate protein stability prediction for small domains using mega-scale experiments www.biorxiv.org/content/10.64898/20… 0238
Reposted by Max StammnitzPeter Škrinjar @peterskrinjar.bsky.social · 11/05/2026Now published in NSMB! Paper: doi.org/10.1038/s415... Full PDF: rdcu.be/fhBtI Overview of additions since the preprint👇 (1/5)doi.orgEvaluating generalization in protein–ligand cofolding methods - Nature Structural & Molecular BiologyThis work introduces the Runs N’ Poses dataset for benchmarking deep learning methods on the protein–ligand complex prediction task. It shows that current methods rely on memorization, challenging the... 23915
Reposted by Max StammnitzLearn Dirt @learndirt.bsky.social · 02/05/2026🌱 "Don't judge each day by the harvest you reap but by the seeds that you plant" —Robert Louis Stevenson 0103
Reposted by Max StammnitzHarris Wang @harriswang.bsky.social · 01/05/20261/ Excited to share our new paper in Science @science.org: “Toward life with a 19-amino acid alphabet through generative artificial intelligence design.” A great collab w/ Sergey's group @sokrypton.org at MIT @columbiasysbio.bsky.social science.org/doi/10.1126/... 🦠🧬🛠️🖥️💥science.orgToward life with a 19–amino acid alphabet through generative artificial intelligence designBecause all known living organisms are made from at least 20 canonical amino acids, the feasibility of life using a more simplified alphabet remains unclear. In this work, we leveraged computational d... 711728
Reposted by Max StammnitzIgnacio_Rubio-Somoza @ignaciorubiosomoza.bsky.social · 30/04/2026We are looking for a new Director @cragenomica.bsky.social to help us keep growing and making even cooler science, come join us!, Application details www.cragenomica.es/sites/defaul... please, help us spread the word!cragenomica.es 0615
Max Stammnitz @maxstammnitz.bsky.social · 24/04/2026Also linking to @carlzimmer.com's latest book, of course! carlzimmer.com/books/airbor...carlzimmer.comAirborne, Carl ZimmerAir-Borne: The Hidden History of the Life We Breathe Order Now The fascinating, untold story of the air we breathe, the hidden life it... 000
Max Stammnitz @maxstammnitz.bsky.social · 24/04/2026Another weekly reminder of the promise of sequencing airborne eDNA. So much to do. So much to learn. 🧬 🌍 🧑💻 www.nature.com/articles/d41...nature.comThe air is full of DNA — here’s what scientists are using it forAirborne genetic material can be used to paint a picture of ecosystem health, watch for invasive species and even identify humans. 110
Max Stammnitz @maxstammnitz.bsky.social · 26/03/2026... looking forward to re-connect in person next year, slightly jealous of y'all who made it to Melbourne! :) 100
Reposted by Max StammnitzDerek Lowe @dereklowe.bsky.social · 23/03/2026The latest AI/ML tools for co-folding proteins around small molecule ligands can produce impressive results. Until you start looking at them closely.science.orgAI-Predicting Compound Affinity. We Aren't There Yet. 07924
Max Stammnitz @maxstammnitz.bsky.social · 20/03/2026On the uses and misuses of airborne DNA detection 🌬️🌱🧬 www.elperiodico.com/es/ciencia/2... 🇪🇸 with David Duffy @ufresearch.bsky.social in @elperiodico.comelperiodico.comYa es posible extraer ADN humano del aire: riesgo de una vigilancia masivaExtraer ADN del aire permite detectar patógenos y monitorizar la biodiversidad. Sin embargo,esto puede convertirse en una herramienta de control y los expertos llaman a la regulación del sector. 031
Reposted by Max StammnitzICREA Community @icreacommunity.bsky.social · 19/03/2026Our warmest congratulations to #ICREAResearcher José Luis Riechmann and team at @cragenomica.bsky.social! They discovered tiny peptides that could be key for flower development, conserved across plant species. 🌿🧪 bsky.appCRAG (@cragenomica.bsky.social)Twenty-five years after the sequencing of the human genome, scientists are still uncovering hidden layers of the “book of life”. A team led by CRAG researcher José Luis Riechmann published the first characterization of peptides derived from sORFs during flower development in Arabidopsis thaliana 🌸🔬 013
Max Stammnitz @maxstammnitz.bsky.social · 07/03/2026Very few things in academia are as rewarding as witnessing the progress and growth of your students, their research and discoveries over the years. Such a nice weekend read by @robjohnnoble.bsky.social 🫶 (also: great title!) 040
Max Stammnitz @maxstammnitz.bsky.social · 27/02/2026What a piece of art on L1! Big congrats to you all 010
Max Stammnitz @maxstammnitz.bsky.social · 23/02/2026Wonderful to have David Duffy with us last week! Lots of new biodiversity genomics and eDNA approaches in the making ... 🧬🐢🌦️ @crg.eu @prbb.org @ufresearch.bsky.social 072
Reposted by Max StammnitzCRAG @cragenomica.bsky.social · 12/02/2026🌱 Join us tomorrow for the seminar "Deep mutational scanning of plant hormone receptors" by Maximilian R. Stammnitz (@maxstammnitz.bsky.social) from the Center for Genomic Regulation (@crg.eu) 👀 Don't miss it! 👉 f.mtr.cool/pgnowtoakf 081
Reposted by Max StammnitzCarolyn Bertozzi @carolynbertozzi.bskyverified.social · 20/12/2025Multidisciplinary training, over time, produces the highest impact people www.science.org/doi/10.1126/...science.orgRecent discoveries on the acquisition of the highest levels of human performanceScientists have long debated the origins of exceptional human achievements. This literature review summarizes recent evidence from multiple domains on the acquisition of world-class performance. We re... 621270
Reposted by Max StammnitzGabriela Biló @gabrielabilo1.bsky.social · 23/05/2025O maior fotógrafo do Brasil e um dos maiores do mundo descansa hoje. Vá em paz, Sebastião Salgado. 224254
Max Stammnitz @maxstammnitz.bsky.social · 02/06/2025... so please have a look at our preprint and get in touch if you’d like to learn more, explore and use the data, etc 🙂 AND: definitely also check out @taylor-mighell.bsky.social's fascinating story on GPCRs – with even more receptor dose-response curves! www.biorxiv.org/content/10.1... [7/7]biorxiv.orgThe genetic architecture of G-protein coupled receptor signalingG-protein coupled receptors (GPCRs) are the most abundant class of human receptors and drug targets. The vast majority of GPCR drugs bind the conserved orthosteric pocket, which can lead to non-specif... 030
Max Stammnitz @maxstammnitz.bsky.social · 02/06/2025Deep mutational scanning is developing really fast. One of the new directions lies in the exploration of larger, more dynamic proteins. Another in the study of small-molecule interactions. Chemically inducible receptors and other glueable dimerisation systems offer us one way forward … [6/7] 110
Max Stammnitz @maxstammnitz.bsky.social · 02/06/2025These rich data allow us to fit thousands of dose-response curves. With these we can systematically compare mutants’ key signalling parameters including basal phosphatase binding, hormone sensitivity and maximum response. And there are lots of cool examples & correlations, surprises … 🔎🕵️💚 [5/7] 110
Max Stammnitz @maxstammnitz.bsky.social · 02/06/2025Now what does one get out of this?? A massive map of position-, amino acid-, and small-molecule concentration-dependent variant effects! [4/7] 110
Max Stammnitz @maxstammnitz.bsky.social · 02/06/2025To better understand this ABA receptor’s genetic encoding, we mutated every position to all 20 amino acids. A glueable protein complementation assay (GluePCA) then allowed us to measure the relative binding strength of each receptor variant vs. phosphatase – at 12 different dosages of ABA. [3/7] 110
Max Stammnitz @maxstammnitz.bsky.social · 02/06/2025PYR/PYL receptors (grey) are key to plant water homeostasis and stress signalling. 💦🌱🌞 Abscisic acid ('ABA', green), is bound through a deep hydrophobic pocket. This triggers the allosteric closure of two loops which generate a new binding interface with response phosphatases (white). [2/7] 120
Max Stammnitz @maxstammnitz.bsky.social · 02/06/20251 plant hormone receptor ☘️ 3,500 mutants, to single-site saturation 🧬 >45,000 binding and abundance measurements 📶 Very happy to present our latest work – where deep mutational scanning meets the world of small molecules. www.biorxiv.org/content/10.1... With @benlehner.bsky.social [1/7]biorxiv.orgThe genetic architecture of an allosteric hormone receptorMany proteins function as switches, detecting chemicals and transducing their concentrations into cellular responses. Receptor switches are key to the integration of environmental signals, yet it is n... 45023