Miguel Correa @m-correa-m.bsky.social · 01/10/2026Blade runner 🤝 2026 biology papers Check the {snake|protein} for the {serial number|watermark} www.youtube.com/watch?v=gmZl...youtube.comBlade Runner - 'Not fish, snake scale'YouTube video by Artiz 000
Miguel Correa @m-correa-m.bsky.social · 29/05/2026Barcelona: probably the first city in the world to name a street after the CASP competition 140
Reposted by Miguel CorreaEdward Marcotte @edwardmarcotte.bsky.social · 16/01/2026Very sad to hear about the passing of Peer Bork, one of true giants of computational biology www.embl.org/news/embl-an...embl.orgIn remembrance of Peer Bork | EMBLEMBL and its community are deeply saddened by the death of Peer Bork, the organisation’s Interim Director General. 1229
Reposted by Miguel CorreaMohammed AlQuraishi @moalquraishi.bsky.social · 28/10/2025OpenFold3-preview (OF3p) is out: a sneak peek of our AF3-based structure prediction model. Our aim for OF3 is full AF3-parity for every modality. We now believe we have a clear path towards this goal and are releasing OF3p to enable building in the OF3 ecosystem. More👇 112642
Reposted by Miguel CorreaTanja Stadler @tanjastadler.bsky.social · 25/10/2025Open position at the Swiss Institute of Bioinformatics: We are looking for a Director of the Center of Pathogen Bioinformatics apply.refline.ch/499599/0346/... I am in the Center's steering board together with fantastic colleagues (Emma Hodcroft @firefoxx66.bsky.social, Richard Neher @neher.io, andapply.refline.chDirector, Center for Pathogen BioinformaticsThe Centre for Pathogen Bioinformatics (CPB) is a unit of SIB which offers expertise and services in pathogen bioinformatics, computational molecular epidemiology and related multi-site project manage... 12134
Miguel Correa @m-correa-m.bsky.social · 27/10/2025 Hot off the press! Our paper, “Global comparative structural analysis of responses to protein phosphorylation”, is now out in Nature Communications! www.nature.com/articles/s41...nature.comGlobal comparative structural analysis of responses to protein phosphorylation - Nature CommunicationsPhosphorylation is central to protein regulation, yet its structural mechanisms remain poorly understood. Here, the authors conduct a global, systematic analysis of phosphorylated versus non-phosphory... 14512
Reposted by Miguel CorreaNisha Hemandhar @nishahemandhar.bsky.social · 20/08/2025Excited to share my PhD research, now on bioRxiv! We report a proteo-transcriptomic reprogramming and resource reallocation in the aging brain. Co–first author with Verena Kluever. Grateful to @forna.bsky.social for mentorship, and to @tatjanat.bsky.social, Carlos López Otín & all collaborators🧠 283
Miguel Correa @m-correa-m.bsky.social · 02/05/2025Today in predatory journal spam: plagiarizing 15% of your manuscript is OK 000
Miguel Correa @m-correa-m.bsky.social · 16/04/2025Good to know our paper on the protein-protein interaction network between phytoplasma effectors and host proteins is getting attention: it's a #TopViewedArticle in TPJ @theplantjournal.bsky.social onlinelibrary.wiley.com/doi/full/10....onlinelibrary.wiley.comProtein interaction mapping reveals widespread targeting of development‐related host transcription factors by phytoplasma effectorsThis work shows that the effectors of phytoplasma, a globally economically important bacterial plant pathogen, have pervasive interactions with development-related host transcription factors, providi... 020
Reposted by Miguel CorreaSergey Ovchinnikov @sokrypton.org · 09/04/2025If anyone has any tips for fellowships or grants or giftfunds our group can apply for (in the US), please send our way. So far, we've not had much luck in raising funds... 💰 In this relatively popular area, so I feel like I'm doing something wrong 😅 52510
Reposted by Miguel CorreaKevin K. Yang 楊凱筌 @kevinkaichuang.bsky.social · 10/02/2025A protein language model trained to predict subcellular localization for human proteins can generate de novo sequences with the desired localization and identify pathological mutations. @itamarchinn.bsky.social @pgmikhael.bsky.social www.science.org/doi/10.1126/... 29318
Reposted by Miguel CorreaAndre Faure @ajfaure.bsky.social · 30/01/2025At ALLOX @alloxbio.bsky.social in Barcelona we now have 3 computational positions available! 📌Structural Bioinformatics Scientist 👉 tinyurl.com/3rs46j4t 📌Platform Bioinformatician 👉 tinyurl.com/nyvazbke 📌Computational Chemist 👉 tinyurl.com/5n6vpem3 Apply or repost to help us spread the word 🙏 22521
Reposted by Miguel CorreaYlva Ivarsson @ivarssonlab.bsky.social · 15/01/2025Looking forward to the monthly on-line seminars organized by the Protein Modules Community @pmc-modularity.bsky.social and talks on SLiMs, systems biology, signaling, computational biology and much more. First talks by Dr Gogl @teamgogl.bsky.social and Dr Dionne @gingraslab.bsky.social. 01610
Reposted by Miguel CorreaMarc Robinson-Rechavi @marcrr.bsky.social · 16/01/2025Long Covid: The never-ending pandemic in the magazine of @snsf-ch.bsky.social www.horizons-mag.ch/2024/12/02/t...horizons-mag.chThe never-ending pandemicHorizons - Issue 143 172
Reposted by Miguel CorreaNature Biotechnology @natbiotech.nature.com · 16/01/2025Deep learning methods aid in de novo design of proteins to neutralize lethal snake venom toxins in vitro and protect mice from a lethal neurotoxin challenge. www.nature.com/articles/s41... #NBThighlightnature.comDe novo designed proteins neutralize lethal snake venom toxins - NatureDeep learning methods have been used to design proteins that can neutralize the effects of three-finger toxins found in snake venom, which could lead to the development of safer and more accessible an... 13210
Reposted by Miguel CorreaVenki Murthy @neurovenki.bsky.social · 02/01/2025The Nobel Prize-winning chemist, Martin Karplus, has passed away. A pioneer in the theory and computation of the dynamics of macromolecules. 🧪 #ChemSky 07622
Reposted by Miguel CorreaStephanie Wankowicz @stephanieaw.bsky.social · 16/12/2024Are PDB models biased in terms of how well they explain the underlying experimental data and are modeled? www.biorxiv.org/content/10.1...biorxiv.orgModeling Bias Toward Binding Sites in PDB Structural ModelsThe protein data bank (PDB) is one of the richest databases in biology. The structural models deposited have provided insights into protein folds, relationships to evolution, energy functions of struc... 14317
Reposted by Miguel CorreaJean-Philip Piquemal @jppiquem.bsky.social · 23/11/2024#compchem Good read: Allosteric Communication Mediated by Protein Contact Clusters: A Dynamical Model #compchemsky pubs.acs.org/doi/10.1021/...pubs.acs.orgAllosteric Communication Mediated by Protein Contact Clusters: A Dynamical ModelDescribing the puzzling phenomenon of long-range communication between distant protein sites, allostery is of paramount importance in biomolecular regulation and signal transduction. It is commonly as... 1112
Reposted by Miguel CorreaBird account @dialecticbio.bsky.social · 23/11/2024How much of computational biology is doing detective work trying to figure out why some program won't run? 5455
Miguel Correa @m-correa-m.bsky.social · 03/12/2024For those around Zurich, I'll be at the Zurich Seminar in #Bioinformatics this Thursday to talk about my work on the impact of phosphorylation on protein structure: compbiozurich.org/news/2024/20...compbiozurich.orgGlobal comparative structural analysis of responses to protein phosphorylation<br/>Miguel Correa, FGCZ - CompbioZurichZurich Seminars in Bioinformatics 113
Reposted by Miguel CorreaDaniel Probst @skepteis.bsky.social · 02/12/2024Here's a first: I'm hiring a PhD student. If you have (or know someone who has) a strong background and interest in computational (bio)chemistry or computer science (especially 3D computer vision), let's work together 😊 www.wur.nl/nl/vacature/...wur.nlPhD student - Machine learning in bio- and cheminformatics 04322
Miguel Correa @m-correa-m.bsky.social · 02/12/2024Dear hivemind, in the absence of a fresh CAFA publication: what predictor(s) do people consider to be the state-of-the-art in protein function prediction nowadays? #bioinformatics #bioml #protein 022
Reposted by Miguel CorreaTorsten Schwede @torstenschwede.bsky.social · 02/12/2024Assessors’ conclusions of the 3D category (individual protein chains) of #CASP16 🧪 02511
Reposted by Miguel CorreaArne Elofsson @handle.invalid · 28/11/2024#CASP16 program is posted (so you can guess the "winners". Congratulations to Yang and Kihara who seems to have done well in RNA+Proteins. Also congratulations to AF3-server (i.e. me) who was selected to talk (i.e. most people did worse than the server). predictioncenter.org/casp16/doc/C... .predictioncenter.org 24118