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Miguel Correa

@m-correa-m.bsky.social
307 followers 681 following 29 posts

Computational biologist @ Roche | Views my own

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Miguel Correa @m-correa-m.bsky.social · 01/10/2026
Blade runner 🤝 2026 biology papers Check the {snake|protein} for the {serial number|watermark} www.youtube.com/watch?v=gmZl...
youtube.com
Blade Runner - 'Not fish, snake scale'
YouTube video by Artiz
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Miguel Correa @m-correa-m.bsky.social · 29/05/2026
Barcelona: probably the first city in the world to name a street after the CASP competition
Street sign that says "CARRER DE CASP" ("CASP STREET" In Catalan)
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Edward Marcotte @edwardmarcotte.bsky.social · 16/01/2026
Very sad to hear about the passing of Peer Bork, one of true giants of computational biology www.embl.org/news/embl-an...
embl.org
In remembrance of Peer Bork  | EMBL
EMBL and its community are deeply saddened by the death of Peer Bork, the organisation’s Interim Director General.
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Mohammed AlQuraishi @moalquraishi.bsky.social · 28/10/2025
OpenFold3-preview (OF3p) is out: a sneak peek of our AF3-based structure prediction model. Our aim for OF3 is full AF3-parity for every modality. We now believe we have a clear path towards this goal and are releasing OF3p to enable building in the OF3 ecosystem. More👇
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Tanja Stadler @tanjastadler.bsky.social · 25/10/2025
Open position at the Swiss Institute of Bioinformatics: We are looking for a Director of the Center of Pathogen Bioinformatics apply.refline.ch/499599/0346/... I am in the Center's steering board together with fantastic colleagues (Emma Hodcroft @firefoxx66.bsky.social, Richard Neher @neher.io, and
apply.refline.ch
Director, Center for Pathogen Bioinformatics
The Centre for Pathogen Bioinformatics (CPB) is a unit of SIB which offers expertise and services in pathogen bioinformatics, computational molecular epidemiology and related multi-site project manage...
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Miguel Correa @m-correa-m.bsky.social · 27/10/2025
Hot off the press! Our paper, “Global comparative structural analysis of responses to protein phosphorylation”, is now out in Nature Communications! www.nature.com/articles/s41...
nature.com
Global comparative structural analysis of responses to protein phosphorylation - Nature Communications
Phosphorylation is central to protein regulation, yet its structural mechanisms remain poorly understood. Here, the authors conduct a global, systematic analysis of phosphorylated versus non-phosphory...
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Nisha Hemandhar @nishahemandhar.bsky.social · 20/08/2025
Excited to share my PhD research, now on bioRxiv! We report a proteo-transcriptomic reprogramming and resource reallocation in the aging brain. Co–first author with Verena Kluever. Grateful to @forna.bsky.social‬ for mentorship, and to @tatjanat.bsky.social‬, Carlos López Otín & all collaborators🧠
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Miguel Correa @m-correa-m.bsky.social · 02/05/2025
Today in predatory journal spam: plagiarizing 15% of your manuscript is OK
Screenshot from predatory journal invitation spam: "To maintain the integrity of our journal, we would like to emphasise the importance of producing original and results- oriented articles with a maximum of 15% plagiarism, including references. We kindly request that you adhere to the scope of our journal and ensure that your hard work is protected."
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Miguel Correa @m-correa-m.bsky.social · 16/04/2025
Good to know our paper on the protein-protein interaction network between phytoplasma effectors and host proteins is getting attention: it's a #TopViewedArticle in TPJ @theplantjournal.bsky.social onlinelibrary.wiley.com/doi/full/10....
onlinelibrary.wiley.com
Protein interaction mapping reveals widespread targeting of development‐related host transcription factors by phytoplasma effectors
This work shows that the effectors of phytoplasma, a globally economically important bacterial plant pathogen, have pervasive interactions with development-related host transcription factors, providi...
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Sergey Ovchinnikov @sokrypton.org · 09/04/2025
If anyone has any tips for fellowships or grants or giftfunds our group can apply for (in the US), please send our way. So far, we've not had much luck in raising funds... 💰 In this relatively popular area, so I feel like I'm doing something wrong 😅
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Kevin K. Yang 楊凱筌 @kevinkaichuang.bsky.social · 10/02/2025
A protein language model trained to predict subcellular localization for human proteins can generate de novo sequences with the desired localization and identify pathological mutations. @itamarchinn.bsky.social @pgmikhael.bsky.social www.science.org/doi/10.1126/...
ProtGPS classifies protein compartment with high performance.Generative modeling creates novel proteins that concentrate in a desired condensate.Pathogenic mutations are predicted to alter protein compartmentalization
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Andre Faure @ajfaure.bsky.social · 30/01/2025
At ALLOX @alloxbio.bsky.social in Barcelona we now have 3 computational positions available! 📌Structural Bioinformatics Scientist 👉 tinyurl.com/3rs46j4t 📌Platform Bioinformatician 👉 tinyurl.com/nyvazbke 📌Computational Chemist 👉 tinyurl.com/5n6vpem3 Apply or repost to help us spread the word 🙏
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Ylva Ivarsson @ivarssonlab.bsky.social · 15/01/2025
Looking forward to the monthly on-line seminars organized by the Protein Modules Community @pmc-modularity.bsky.social and talks on SLiMs, systems biology, signaling, computational biology and much more. First talks by Dr Gogl @teamgogl.bsky.social and Dr Dionne @gingraslab.bsky.social.
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Marc Robinson-Rechavi @marcrr.bsky.social · 16/01/2025
Long Covid: The never-ending pandemic in the magazine of @snsf-ch.bsky.social www.horizons-mag.ch/2024/12/02/t...
horizons-mag.ch
The never-ending pandemic
Horizons - Issue 143
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Nature Biotechnology @natbiotech.nature.com · 16/01/2025
Deep learning methods aid in de novo design of proteins to neutralize lethal snake venom toxins in vitro and protect mice from a lethal neurotoxin challenge. www.nature.com/articles/s41... #NBThighlight
nature.com
De novo designed proteins neutralize lethal snake venom toxins - Nature
Deep learning methods have been used to design proteins that can neutralize the effects of three-finger toxins found in snake venom, which could lead to the development of safer and more accessible an...
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Venki Murthy @neurovenki.bsky.social · 02/01/2025
The Nobel Prize-winning chemist, Martin Karplus, has passed away. A pioneer in the theory and computation of the dynamics of macromolecules. 🧪 #ChemSky
Announcement by the Dean of Faculty of Arts and Sciences of the death of Martin Karplus.
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Stephanie Wankowicz @stephanieaw.bsky.social · 16/12/2024
Are PDB models biased in terms of how well they explain the underlying experimental data and are modeled? www.biorxiv.org/content/10.1...
biorxiv.org
Modeling Bias Toward Binding Sites in PDB Structural Models
The protein data bank (PDB) is one of the richest databases in biology. The structural models deposited have provided insights into protein folds, relationships to evolution, energy functions of struc...
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Jean-Philip Piquemal @jppiquem.bsky.social · 23/11/2024
#compchem Good read: Allosteric Communication Mediated by Protein Contact Clusters: A Dynamical Model #compchemsky pubs.acs.org/doi/10.1021/...
pubs.acs.org
Allosteric Communication Mediated by Protein Contact Clusters: A Dynamical Model
Describing the puzzling phenomenon of long-range communication between distant protein sites, allostery is of paramount importance in biomolecular regulation and signal transduction. It is commonly as...
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Miguel Correa @m-correa-m.bsky.social · 12/12/2024
So many easy choices, but I'll go for this
Cover for Massive Attack's 1998 album Mezzanine
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Bird account @dialecticbio.bsky.social · 23/11/2024
How much of computational biology is doing detective work trying to figure out why some program won't run?
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Miguel Correa @m-correa-m.bsky.social · 03/12/2024
For those around Zurich, I'll be at the Zurich Seminar in #Bioinformatics this Thursday to talk about my work on the impact of phosphorylation on protein structure: compbiozurich.org/news/2024/20...
compbiozurich.org
Global comparative structural analysis of responses to protein phosphorylation<br/>Miguel Correa, FGCZ - CompbioZurich
Zurich Seminars in Bioinformatics
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Daniel Probst @skepteis.bsky.social · 02/12/2024
Here's a first: I'm hiring a PhD student. If you have (or know someone who has) a strong background and interest in computational (bio)chemistry or computer science (especially 3D computer vision), let's work together 😊 www.wur.nl/nl/vacature/...
wur.nl
PhD student - Machine learning in bio- and cheminformatics
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Miguel Correa @m-correa-m.bsky.social · 02/12/2024
Dear hivemind, in the absence of a fresh CAFA publication: what predictor(s) do people consider to be the state-of-the-art in protein function prediction nowadays? #bioinformatics #bioml #protein
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Torsten Schwede @torstenschwede.bsky.social · 02/12/2024
Assessors’ conclusions of the 3D category (individual protein chains) of #CASP16 🧪
Conclusions of assessment of 3D category
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Arne Elofsson @handle.invalid · 28/11/2024
#CASP16 program is posted (so you can guess the "winners". Congratulations to Yang and Kihara who seems to have done well in RNA+Proteins. Also congratulations to AF3-server (i.e. me) who was selected to talk (i.e. most people did worse than the server). predictioncenter.org/casp16/doc/C... .
predictioncenter.org
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