iiinova — where your digital self keeps evolving

Reposted by Lisa Buchauer

Lisa Buchauer @libuchauer.bsky.social · 07/01/2026

I'm excited to announce we're recruiting a PhD student in Machine Learning for Immunology within the Einstein Center for Early Disease Interception, together with Simon Haas!

lnkd.in

This link will take you to a page that’s not on LinkedIn

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Lisa Buchauer @libuchauer.bsky.social · 07/01/2026

📍 Start: March/April 2026 (some flexibility) | Location: Berlin (Charité Virchow Campus and MDC-BIMSB)

lnkd.in

This link will take you to a page that’s not on LinkedIn

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Lisa Buchauer @libuchauer.bsky.social · 07/01/2026

💡 We're looking for strong quantitative background (CS, physics, math, ML, bioinformatics), solid programming skills (Python/R), and machine learning experience.

lnkd.in

This link will take you to a page that’s not on LinkedIn

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Lisa Buchauer @libuchauer.bsky.social · 07/01/2026

🧬 You'll develop an "immune ecotype" framework that uses single-cell RNAseq data to build ML classifiers for early lung disease diagnosis. Build algorithms to integrate scRNA-seq data from >1,000 patients, engineer interpretable immune features, train ML classifiers for disease prediction.

lnkd.in

This link will take you to a page that’s not on LinkedIn

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Lisa Buchauer @libuchauer.bsky.social · 07/01/2026

I'm excited to announce we're recruiting a PhD student in Machine Learning for Immunology within the Einstein Center for Early Disease Interception, together with Simon Haas!

lnkd.in

This link will take you to a page that’s not on LinkedIn

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Reposted by Lisa Buchauer

MRC Weatherall Institute of Molecular Medicine @imm.ox.ac.uk · 18/11/2025

#ScientistSpotlight: This week we’re introducing Verena Körber, one of the newest Group Leaders at the MRC WIMM. @rdm.ox.ac.uk @medsci.ox.ac.uk @ox.ac.uk

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Lisa Buchauer @libuchauer.bsky.social · 16/11/2025

(looking for teaching projects for the coming semester ;-) )

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Lisa Buchauer @libuchauer.bsky.social · 16/11/2025

Hi Lorenz, sounds very interesting, is the material available or could you share the outline?

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Reposted by Lisa Buchauer

Adlung Lab @adlunglab.com · 16/11/2025

We care a lot about time. Now one of my best science friends, Melania Barile, et al. introduce TemporalVAE, a deep generative model that maps scRNA-seq data onto developmental time! It works with zero-shot & identifies time-sensitive genes @natcellbio.nature.com 🧪

doi.org

TemporalVAE: atlas-assisted temporal mapping of time-series single-cell transcriptomes during embryogenesis

Nature Cell Biology - Liu et al. present TemporalVAE, a method for integrating single-cell time course data. The model proposes a workflow to determine the biological timing of samples and its...

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Reposted by Lisa Buchauer

Die Junge Akademie @jungeakademie.bsky.social · 07/10/2025

Im November macht das #Utopiemobil erneut Halt im #Futurium in #Berlin. Am 13.11. geht es im Rahmen eines 🌟Open Lab Abends🌟ab 17 Uhr um die Zukunft der #Wissenschaftskommunikation. U.a. mit @leoniewenz.bsky.social und @libuchauer.bsky.social Alle Infos:🔗 www.diejungeakademie.de/de/veranstal...

Foto: Die Junge Akademie/Bernd Brundert
Vier Fotos eines modularen Außenpavillons. Oben links: Innenraum aus beigem Holz mit zwei runden Fenstern, einem rosa Sitzkissen, freiliegenden Drähten und metallischen Luftschlangen. Oben rechts: eine durchsichtige Kuppel auf einem rosafarbenen runden Sockel. Unten links: silberne und rosafarbene geschwungene Außenansicht auf Kies unter Bäumen, ein Ende offen mit einem kurzen Vorhang. Unten rechts: Innenansicht mit einem runden Fenster, einer rosa Tafel mit Text und Luftschlangen.

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Reposted by Lisa Buchauer

Die Junge Akademie @jungeakademie.bsky.social · 09/09/2025

🔍 Wir suchen als Verstärkung eine Leitung für unsere Geschäftsstelle in #Berlin! 📍💼 ✍️ Hier bewerben: karriere.leopoldina.org/jobposting/e... #Job #Stellenausschreibung #Stellenangebot #Organisationsentwicklung #Personalführung #Wissenschaftskommunikation #Wissenschaftsmanagement

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Reposted by Lisa Buchauer

Dominic Grün @dominicgrun.bsky.social · 02/07/2025

Few dates left to apply for this tenure-track professorship on Single-Cell Systems Biology in my department at @uni-wuerzburg.de. Competitive package and highly attractive research environment at the Institute of Systems Immunology.

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Reposted by Lisa Buchauer

Saez-Rodriguez Group @saezlab.bsky.social · 02/07/2025

Postdoc position in our group at @ebi.embl.org about analyzing single cell data sets to better understand and treat neurodegen diseases, in collab with A Bassett, M Lotfollahi, @bayraktarlab.bsky.social, M Strauss and others within Open Targets. Deadline 20/07. Please share tinyurl.com/87wj466m

tinyurl.com

Postdoctoral Fellow in computational modelling of NeuroImmune Mechanisms of Neurodegeneration (Open Targets)

Your role As a Postdoctoral Fellow on the NeuroImmune Open Targets project, you will develop and apply integrative computational pipelines to dissect immune-cell phenotypes and cell–cell interactions ...

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Lisa Buchauer @libuchauer.bsky.social · 02/07/2025

We offer the opportunity to work part-time (0.75FTE or more). Please reach out to me with any questions. Prior experience with the Berlin computational ecosystem is considered a plus!

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Lisa Buchauer @libuchauer.bsky.social · 02/07/2025

We are looking for independent, detail-oriented individuals that want to make a difference for the entire consortium by constructing high-quality data assets and innovative computational omics methods with a circadian twist.

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Lisa Buchauer @libuchauer.bsky.social · 02/07/2025

We are currently recruiting a bioinformatics/computational biology postdoc to join the infrastructure project of a newly funded large research consortium (SFB-TRR) on Circadian Medicine between Charité - Universitätsmedizin Berlin and Universität zu Lübeck ⌚ ⏰ ⏱️ 🕰️ !

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Lisa Buchauer @libuchauer.bsky.social · 12/06/2025

the R is probably the biggest problem 😀 and then the hexagon, I think that is R visual language as well

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Lisa Buchauer @libuchauer.bsky.social · 12/06/2025

decoupler has been very useful for us & helps you dive into meaningful sc analysis quickly! small suggestion to increase uptake: consider changing the logo, at least two python users here initially immediately closed the tab as they thought is was an R package🙃

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Reposted by Lisa Buchauer

Max Delbrück Center @mdc-berlin.bsky.social · 12/06/2025

💡 Great science needs great environments. We are proud that our Single Cell Focus Area is among the ten “Best Research Environments 2024” – selected by @jungeakademie.bsky.social‬ together with the @volkswagenstiftung.de. Congratulations! 🥳 More details: 👉 www.diejungeakademie.de/en/press/bes... 👈

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Reposted by Lisa Buchauer

Christian Gaebler @cgaebler.bsky.social · 05/06/2025

Honored that our lab made the shortlist for Best Research Environment. Awesome initiative by Junge Akademie and proud of the incredible Gaebler Lab team and the entire Infectious Disease Department at Charité/BIH that makes this place what it is! 👏 @libuchauer.bsky.social @sanderlab.bsky.social

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Reposted by Lisa Buchauer

Die Junge Akademie @jungeakademie.bsky.social · 04/06/2025

🧬Unter den Top 24 der besten Forschungsumfelder ist auch die Single #Cell Focus Area. Sie vereint die Forschung der Charité Berlin, des @bihatcharite.bsky.social, des @mdc-bimsb.bsky.social und des @mdc-berlin.bsky.social. Der Preis wird im Juni ausgelost. 👉 www.diejungeakademie.de/de/projekte/...

Das Gruppenfoto zeigt 45 Personen auf einer Holzterrasse vor einer Straße, Palmen und dem Meer.
Bildrechte bei Ashley Sanders, MDC

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Lisa Buchauer @libuchauer.bsky.social · 17/05/2025

also @lorenzadlung.com did you know that it's somehow thanks to you and your many activities that Roberta joined us? :-) many thanks!

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Lisa Buchauer @libuchauer.bsky.social · 17/05/2025

Welcome Roberta, excited to have you with us & wishing you good luck!

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Reposted by Lisa Buchauer

Adlung Lab @adlunglab.com · 07/04/2025

🚨 Preprint Alert! New work from the group! 🟤 We set out to explore how brown adipose tissue (BAT) adapts to cold. 🧬🖥️ Using single-nucleus mRNA-sequencing, we dissected murine BAT and uncovered distinct adipocyte subtypes. 🫓 One in particular stood out... 🧵 1/7

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Reposted by Lisa Buchauer

Sawitzki Lab @sawitzkilab.bsky.social · 18/03/2025

📣 Job alert! 📣 We are are looking for a talented bioinformatician to join us at the Berlin Institute of Health at Charité to analyze multiomics data in post-COVID-19 and ME/CSF syndrome research. Please share and come join us! ⬇️ #ImmunoSky #Bioinformatics #Immunology #ComputationalBiology #MedSky

bihealth.org

Computational Scientist (d/f/m) in Translational Immunology

Vollzeit | 16.04.2025 | BIH Berlin Mitte

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Reposted by Lisa Buchauer

Nils Blüthgen @molsysbio.bsky.social · 11/03/2025

Come and join our seminar series!

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Reposted by Lisa Buchauer

Nils Blüthgen @molsysbio.bsky.social · 02/03/2025

I had similar issues about a week ago, I guess the server now unstable with all the staff fired and chaos caused by ElMu and Trump - try the European one: europepmc.org, often anyway more useful as it includes biorxiv.

europepmc.org

Europe PMCHome - Europe PMC

Europe PMC is an archive of life sciences journal literature.

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Reposted by Lisa Buchauer

Nils Blüthgen @molsysbio.bsky.social · 24/02/2025

See you in Dublin in October for the ICSB2024! Early registration is open at: ICSB2025.com. I will chair an exciting session on "Cell Engineering & Pathway Engineering".

Registration is now open, visit ICSB2025.com

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Reposted by Lisa Buchauer

Christian Gaebler @cgaebler.bsky.social · 24/02/2025

Thank you to Stiftung Charité for featuring me and my group in the FACES interview series! www.stiftung-charite.de/en/news-in-d...

stiftung-charite.de

In conversation with Christian Gaebler, the physician-scientist promoting HIV research in Berlin

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Reposted by Lisa Buchauer

Berlin-Brandenburgische Akademie der Wissenschaften @bbaw.bsky.social · 04/12/2024

Was bringt der Wandel? Wie gehen wir in Wissenschaft und Gesellschaft damit um? Wie verändern sich Wissenschaft und Gesellschaft selbst? Reisen Sie beim #SalonSC durch #Metamorphosen in Geschichte und Gegenwart - am 18.1.25 ab 18 Uhr in der BBAW. salon.bbaw.de/start

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Lisa Buchauer @libuchauer.bsky.social · 18/01/2025

Freue mich drauf, heute Abend als neues Mitglied der Jungen Akademie beim Salon Sophie Charlotte salon.bbaw.de/start der BBAW dabei zu sein! Kommt vorbei und lernt unsere Forschung durch ein besonderes Quartett-Spiel kennen 🃏🃏🃏🃏. Raum 230, 19/20/21 Uhr!

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Reposted by Lisa Buchauer

Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 15/01/2025

This! Also well put in this editorial in PLOS Comp Biol: Putting benchmarks in their rightful place: The heart of computational biology doi.org/10.1371/jour...

Screenshot from paper that says:
"Developing good and comprehensive benchmarks, in which the performance metrics of each tool reflect its real-world utility, requires a significant effort. For highly competitive and established fields, such as protein structure predictions, community experiments evaluating the methods have been held periodically to provide blinded assessments of prediction performance. These blinded assessments are perhaps the gold standard on how benchmarks should be run. However, in most areas of computational biology, no such regular blinded contests are available. Instead, many tool developers end up generating their own benchmarks, which they publish alongside a newly developed tool to show its improved performance. The downside of this approach is that, if a new approach is developed in parallel to assembly of the benchmark on which it is evaluated, there is a strong selection bias encouraging the authors to report tool development approaches performing well against the benchmark compared to previous tools. This reporting bias makes most benchmarks that accompany newly developed tools questionable. Even if the authors are aware of this problem and take conscious steps to separate benchmark, evaluation method, and method development, subconscious bias may persist and affect the final outcome."

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Reposted by Lisa Buchauer

Altuna Akalin @al2na.bsky.social · 07/01/2025

Learn how to analyze spatial omics data! Join our computational genomics course in 2025. Application deadline 30th January. compgen.mdc-berlin.de 🖥️ 🧬 🧪

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Reposted by Lisa Buchauer

Wolfgang Huber @wkhuber.bsky.social · 03/01/2025

How to do differential expression with scRNAseq data? State of the art is "pseudo-bulk" analysis with RNA-seq methods like edgeR or DESeq2, where "cell type" is encoded as discrete categories. Biologically, discrete categories are not always the most appropriate concept.(1/3) doi.org/10.1038/s415...

doi.org

Analysis of multi-condition single-cell data with latent embedding multivariate regression - Nature Genetics

Latent embedding multivariate regression models multi-condition single-cell RNA-seq using a continuous latent space, enabling data integration, per-cell gene expression prediction and clustering-free ...

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Reposted by Lisa Buchauer

Constantin Ahlmann-Eltze @const-ae.bsky.social · 03/01/2025

LEMUR is directly useable for your next single-cell differential expression project! R package: github.com/const-ae/lemur Python package: pylemur.readthedocs.io/en/latest/ Code from the paper: github.com/const-ae/lem...

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Reposted by Lisa Buchauer

Francesca Finotello 🖥️🧬 @francescafinotello.bsky.social · 12/11/2024

🧬 🖥️ Need help for investigating tissue complexity from #spatial #transcriptomics data? Try out our #spacedeconv R package! 💻 Code: github.com/omnideconv/s... 📝 Preprint: www.researchsquare.com/article/rs-5...

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Reposted by Lisa Buchauer

Emanuel Wyler @ewyler.bsky.social · 13/12/2024

Nach den neusten RKI-Zahlen sinken die Impfquoten gegen verschiedene ansteckende Krankheiten wie Polio (Kinderlähmung). Gerade in Kreisen mit ohnehin niedrigeren Polio-Impfquoten (Beispiele Main-Tauber und Deggendorf in der Grafik) ging es drastisch nach unten; deutlich weniger Veränderungen wo…

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Reposted by Lisa Buchauer

Leif Erik Sander 🇪🇺🇺🇦 @sanderlab.bsky.social · 14/12/2024

Impfquoten für Grippe & Pneumokokken sind miserabel in Deutschland. Beides sind günstige, gut verträgliche, sichere Impfstoffe & stellen eine der wirksamsten & einfachsten Präventionsmaßnahmen gegen schwerwiegende Erkrankungen wie Lungenentzündung, ARDS & Sepsis dar! www.rki.de/DE/Content/I...

Impfquoten über die Zeit von 2008-2023 bei Erwachsenen mit Indikation zur Impfung gegen Influenza und Pneumokokken. Impfquoten für Influenza zwischen 30-50% und Pneumokokken 10-20%

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