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Jasper Gomez

@jasgomez.bsky.social
51 followers 93 following 4 posts

Postdoc in Vaughn Coopers lab @ University of Pittsburgh. Interested in phages, microbes, evolution and phage therapy.

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Reposted by Jasper Gomez
Vaughn Cooper @vscooper.micropopbio.org · 27/09/2026
How do Burkholderia multivorans bacteria adaptively evolve during infections of the cystic fibrosis airway? A longtime collab and intensive study of 8 patients links bacterial adaptations to disease progression. Our findings also unite prior studies. www.biorxiv.org/content/10.6...
biorxiv.org
Convergent genetic evolution within Burkholderia multivorans chronic infections correlates with lung function decline in cystic fibrosis patients
The patterns and pathways of pathogen adaptation during chronic infections can reveal the gateways microbes must unlock to colonize and persist. In chronic lung infections of cystic fibrosis (CF) pati...
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Daria Van Tyne @dariavantyne.bsky.social · 22/09/2026
My lab at Pitt is looking for a Laboratory Technician to help our research and phage therapy efforts. Please share and apply! cfopitt.taleo.net/careersectio...
cfopitt.taleo.net
Laboratory Technician
Click the link provided to see the complete job description.
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Richard Lenski @relenski.bsky.social · 10/09/2026
A nice timeline of the #LTEE in the #MSU Spartan #Science magazine: spartanscience.natsci.msu.edu/evolution-in...
spartanscience.natsci.msu.edu
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Jasper Gomez @jasgomez.bsky.social · 15/08/2026
My PhD work with my awesome mentor Chris Waters and collaborator Jeff Barrick looking at how phages encode contingency loci to overcome phage defense systems and potentially other stresses via phase variation is out! www.nature.com/articles/s41...
nature.com
Phage-encoded contingency loci enable bet-hedging against host defence mechanisms - Nature Microbiology
Diverse E. coli phage genomes have hypermutable DNA regions that promote reversible frameshift mutations through DNA polymerase slippage, generating population heterogeneity that enables host exploita...
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Jeremy Berg @jeremymberg.bsky.social · 07/08/2026
Pittsburgh Post-Gazette story about the recent NIH grant terminations. www.post-gazette.com/news/educati... 1/3
post-gazette.com
So far, terminated NIH grants have cost University of Pittsburgh $40 million
The federal government has unexpectedly ended two more research grants at the University of Pittsburgh, which in one case, upends 16 years of research...
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Drew Bridges @bridgesbio.bsky.social · 29/04/2026
New preprint: "A branching cell-fate decision in biofilm dispersal enables long-term surface persistence." When V. cholerae biofilms disperse, it isn’t a uniform exit, rather, an opportunity to bet-hedge. A subpopulation of cells stay behind, primed for biofilm regrowth. doi.org/10.64898/202...
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Simon Fisher @profsimonfisher.bsky.social · 29/03/2026
Project Hail Mary is a beautiful brilliant film. But molecular biologists be warned there's a deeply disturbing scene midway through when Ryan Gosling's scientist places two eppendorfs directly next to each other in an otherwise empty unbalanced microcentrifuge & sets it spinning with wild abandon.
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Vaughn Cooper @vscooper.micropopbio.org · 01/03/2026
Given that clonal biofilms of single bacterial species rapidly diversify into niche specialists, how do biofilms of multiple species evolve? A 🧵 featuring new collaborative pubs: 1. www.biorxiv.org/content/10.6... 2. www.nature.com/articles/s41...
biorxiv.org
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Carl Quintanilla @carlquintanilla.bsky.social · 27/02/2026
This is amazing. www.getyourfuckingmoneyback.com
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Richard Lenski @relenski.bsky.social · 24/02/2026
Happy 38th birthday to the #LTEE! #BOTD in 1988. Keep on evolving! #science #evolution #microbiology
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Dr. Michael D. L. Johnson @copperbae.bsky.social · 09/02/2026
The only thing more powerful than hate is love!
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Dr. Michael D. L. Johnson @copperbae.bsky.social · 09/02/2026
Handing the kid the Grammy was cute
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MSU MGI @msumgi.bsky.social · 15/12/2025
Congratulations to our graduates! We are so proud of you and can't wait to see the great things you will accomplish!
Dr. Megan Korne gets hooded by Dr. Greg Bonito. 
Dr. Charles Whitehead-Tillery shakes Pres. Guskiewicz's hand while his advisor, Dr. Linda Mansfield, looks on, smiling.
Dr. Alex Wessel and Dr. Jasper Gomez stand with their advisor, Dr. Chris Waters. 
Dr. Beth Ottosen smiles after getting hooded by her advisor, Dr. Vic DiRita.
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Richard Lenski @relenski.bsky.social · 05/11/2025
Trifecta!!! Three superb dissertation seminars in one week: ⭐ Jasper Gomez on Friday, working with Chris Waters. ⭐ Devin Lake yesterday, with me. ⭐ Beth Ottosen today, with Vic DiRita. @jasgomez.bsky.social @devinmlake.bsky.social @msumgi.bsky.social @waterslab
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Richard Lenski @relenski.bsky.social · 04/11/2025
Congratulations to DOCTOR Devin Lake, who successfully defended his Ph.D. and gave a splendid seminar this afternoon! His dissertation is titled: "Evolutionary Dynamics in Asexual Populations: The Interplay of Theory, Experiments, and Simulations."  @devinmlake.bsky.social
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Kyle Card @kylejcard.bsky.social · 22/10/2025
I don't understand why groups design plasmids, publish protocol papers centered on their use, and then not deposit them to Addgene. Open, reproducible science should be our North Star, not an afterthought (or worse, never considered at all).
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 22/10/2025
Phages use contingency loci as a bet-hedging strategy www.biorxiv.org/content/10.1101/202…
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Vaughn Cooper @vscooper.micropopbio.org · 15/10/2025
Terrific writeup of our new paper led by @nanamikubota.bsky.social, thanks Pitt media! www.medschool.pitt.edu/news/bacteri...
medschool.pitt.edu
Bacteria Can Use Viruses to Kill Other Bacteria, Pitt Researchers Find | School of Medicine | University of Pittsburgh
Many bacteria, including the opportunistic pathogen Pseudomonas aeruginosa, are chronically infected by viruses that can reproduce without killing the cell. These viruses, called filamentous phages, t...
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Nanami Kubota @nanamikubota.bsky.social · 02/10/2025
Published in Current Biology! P. aeruginosa can use its filamentous phage to inhibit competitors but high phage production is susceptible to cheater miniphage invasion. Subsequent phage tragedy of the commons can lower bacteria and phage fitness. Link: authors.elsevier.com/c/1lt5I3QW8S...
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Aathmaja @aathmaja.bsky.social · 24/09/2025
Check out my recent publication on how zinc and quorum sensing affects cyclic di GMP in V. cholerae. share.google/JaOJv48OAhH4...
share.google
A cyclic di-GMP phosphodiesterase in the VSP-2 island of Vibrio cholerae is regulated by zinc and quorum sensing | mBio
Vibrio cholerae colonizes estuarine environments and human hosts, where it transitions between motile and sessile states using the second messenger cyclic di-GMP (cdG). cdG levels change in response to a variety of signals and are controlled by the activity of diguanylate cyclases and phosphodiesterase (PDEs), enzymes that make and degrade cdG. In this work, we show that Zn2+ and the cell density regulator HapR repress ZpdA, the PDE present in the Vibrio seventh pandemic 2 island, at the level of transcription, and that Zn2+ unexpectedly alters the PDE activity of ZpdA protein itself. Our study highlights the role of metal availability as an important signaling cue that controls V. cholerae biology.
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Vaughn Cooper @vscooper.micropopbio.org · 19/08/2025
I am DEEPLY SYMPATHETIC that the NIH staff are working desperately hard in the hurt locker. I am grateful that they hold the fort. But, to the admin: YOU BROKE IT, YOU BOUGHT IT. Most folks want tax $ to support this work, and they will vote accordingly if they know about this. Share and speak up!
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Devin Lake @devinmlake.bsky.social · 12/08/2025
I couldn’t be more proud of STEPS! Hats off to Zach, Mina, and Rich (@relenski.bsky.social) for all their hard work on the project. I look forward to adding new features and fighting with inevitable bugs in the future!
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Vaughn Cooper @vscooper.micropopbio.org · 04/08/2025
asm.org/press-releas...
asm.org
Scientific Societies File Supreme Court Amicus Brief in Support of NIH Grantees
ASM and fellow societies filed an amicus brief with the Supreme Court, calling for the swift restoration of NIH grant funding supporting early-career scientists, such as the MOSAIC program.
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MSU MGI @msumgi.bsky.social · 30/06/2025
Dr. Aathmaja Rangarajan, an MGI postdoctoral researcher in the Waters Lab, shares highlights of her first trip to ASM Microbe last week. The trip was supported by the ASM Peggy Cotter Travel Award. Read more here: tinyurl.com/rwdmcnm
Dr. Rangarajan stands with a large, person-sized, heart-shaped sign reading "ASM Microbe." She is smiling broadly.
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Vivek Mutalik @vivekmutalik.bsky.social · 30/06/2025
Hey folks in academic world: be nice & respectful to the invited speakers. That includes: students, postdocs, & early career scientists. If you are disrespectful, know that this world is round & Karma will catch up w you very quick.
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Aathmaja @aathmaja.bsky.social · 20/06/2025
Excited to attend my first ASM microbe this year at LA. Will be presenting my postdoctoral work from Waters lab on "Zinc regulation of cyclic di-GMP in V. Cholerae" in Room 408B from 3.30-3.45 on June 20th. Looking forward to seeing you all there. #asm2025
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Jasper Gomez @jasgomez.bsky.social · 19/06/2025
Excited to be representing the Waters lab alongside @aathmaja.bsky.social at #ASMicrobe! Interested how phages use contingency loci as bet hedging strategy? I’ll be talking about this Sat 6/21 from 10-10:15am at “Predicting Microbial Evolution” 403A, LACC
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Nanami Kubota @nanamikubota.bsky.social · 19/06/2025
Cooper lab is at #ASMicrobe ! See the thread for a list of all our presentations. Interested in filamentous cheater phages of P. aeruginosa? I'll be talking about them tomorrow Friday from 9:45-10am at the "Who Runs the World? Phage" session (408B, LACC)
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Vaughn Cooper @vscooper.micropopbio.org · 18/06/2025
SeqCoast Genomics @seqcoast.bsky.social won’t be at ASM Microbe, but they are sharing their saved $$ with you by *not raising prices*! Send your samples or buy prepaid vouchers for services now!
SeqCoast Genomics is not raising prices!We offer Insights Vouchers to help you preserve spending power of expiring grantsPreserve the spending power of your grants!
We support prepayment for services in two ways:
1. Prepaid Insights Vouchers are valid for any SeqCoast service for up to one year from the date of purchase.
2. Prepaid order of services you expect to use for your project.
Two payment method options:
1. Credit card, which includes a processing fee of 1.5% of total service cost.
2. Purchase Order ("PO") issued by your institution with standard payment terms of 30 days.We can help you with your grant proposal!
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Emily✨ @emilyoram.bsky.social · 11/06/2025
This is incredible
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Vaughn Cooper @vscooper.micropopbio.org · 08/06/2025
So: 👉🏻Student research can make impactful scientific contributions 👉🏻These findings and shared experiments build a community of teachers and young researchers 👉🏻Research experiences can have positive, long-lasting impacts on attitudes towards science 🚨EvolvingSTEM has reached >7500 students to date
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Vaughn Cooper @vscooper.micropopbio.org · 08/06/2025
Sharing the most significant work from my group, led by the @evolvingstem.bsky.social team. Come for the discoveries of how Pseudomonas adapts in biofilms, stay for the story of how they were discovered by thousands of young scientists in grades 9-12. 🧪🧫🧬🧵 www.biorxiv.org/content/10.1...
biorxiv.org
Student-led experimental evolution reveals novel biofilm regulatory networks underlying adaptations to multiple niches
We established a research-education partnership known as EvolvingSTEM that provides secondary school students the opportunity to conduct authentic research experiments centered on microbial evolution....
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Mark O. Martin @markowenmartin.bsky.social · 25/05/2025
One problem we face today is how few people understand the science that helps us all. Some scientists are able to explain the importance of their work. @baym.lol of Harvard University is one of them. Science is for everyone, and benefits us all more than most people know.
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Annie Zaleski @anniezaleski.bsky.social · 17/05/2025
I have known @baym.lol for many, many years and listening to this interview just broke my heart.
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Audrey Drotos, PhD 🧠 🔬 @audreydrotos.bsky.social · 16/05/2025
Heartbroken to hear that the @hhmi.org Hanna Grey fellowship competition is being cancelled this year. I poured so much work and creativity into this app and am very grateful for everyone who helped me revise. It is such a difficult time to be a young scientist.
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Ryan Boileau @bffswithbiology.bsky.social · 16/05/2025
Oof, just got notice HHMI is not even doing Hanna Gray Fellows, or any competition, this year due to the challenging times in science funding rn 😬 Understandable. On the bright side, I was really proud my application🌈 #science #nih #hhmi
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Prasad Jallepalli, MD, PhD @prasad.bsky.social · 16/05/2025
Must read for everyone concerned with the health, prosperity, and global leadership of America
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Vaughn Cooper @vscooper.micropopbio.org · 16/05/2025
Just imagine, folks, if you: a) busted your ass to make it to grad school b) developed a research program incredible enough to earn a F31, only to see it terminated b/c you are URM c) applied for a HHMI Hannah Gray, only to see the program canceled This is evil, hurtful, resegregation of science
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Asaf Levy @asaflevylab.bsky.social · 14/05/2025
A new preprint from the lab in collaboration with Feng Jiang. www.biorxiv.org/content/10.1... This is a thread for you if you're interested in secretion systems, phages, and evolution. The extracellular contractile injection system (eCIS) is a mysterious microbial toxin delivery system.
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Michael Baym @baym.lol · 14/05/2025
Yesterday, the NIH R35 “Outstanding Investigator” grant to fund scientists in my lab studying antibiotic resistance was terminated for reasons not related to the content of the science, or any actions taken by me or members of my lab
A screenshot of the termination notice showing "Outstanding Investigator Grants"A screenshot of the termination notice with "This award is terminated effective the date of this award, due to unsafe antisemitic actions that suggest the institution lacks concern for the safety and wellbeing of Jewish students." highlighted
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Michael Baym @baym.lol · 13/05/2025
If you're at one of the targeted institutions and have an active NIH grant you might want to check ERA Commons immediately for an "updated" NoA
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EvolvingSTEM program @evolvingstem.bsky.social · 07/05/2025
WTAE filmed us in working with students at Pittsburgh Perry HS, one of more than 30 schools we partner with. This feature shows the value of NIH & NSF funding at work. Thanks: teacher Vicki Ammer, Prof. Cassie Quigley from Education, and our team, feat. Colton as local star. Segment 1:
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EvolvingSTEM program @evolvingstem.bsky.social · 07/05/2025
In this second segment, they discuss major outcomes of EvolvingSTEM: 1) improved learning of evolution, genetics, microbiology, and more importantly: 2) greater occupational identity in STEM. Students begin to see themselves as scientists and want to do more!
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EvolvingSTEM program @evolvingstem.bsky.social · 07/05/2025
Final segment: our program and others like it may end w/ cuts to NIH and NSF. Our amazing instructors who teach >2500 students / year are paid by these grants. They allow our lab to innovate these curricula and measure how they benefit students. Tell your reps our kids need these programs!
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Vaughn Cooper @vscooper.micropopbio.org · 07/05/2025
EvolvingSTEM in action at Pittsburgh Perry HS @evolvingstem.bsky.social www.wtae.com/article/pitt...
wtae.com
Federal freezes threaten Pitt's STEM outreach in high schools
Scientists at the University of Pittsburgh have been teaching inside local high schools for ten years through the Evolving-STEM program, which now faces potential federal funding cuts.
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Trevor Lithgow @trevor-lithgow.bsky.social · 01/05/2025
"That telomere phages are so prevalent means that they are a selective force, one that we know little about. We now want to understand how the telomere-toxin is secreted and also understand how this ‘telocin’ wheedles its way into unsuspecting bacterial neighbors” www.science.org/doi/10.1126/...
science.org
Telomere bacteriophages are widespread and equip their bacterial hosts with potent interbacterial weapons
Klebsiella host strains infected with telomere phages can grow to be the dominant lineage in mixed populations.
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Randall Munroe @xkcd.com · 25/04/2025
PhD Timeline xkcd.com/3081
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Liz Ortiz de Ora @ortizdeora.bsky.social · 18/04/2025
I am thrilled to share the first manuscript from the Wiles lab! We present "Phollow", an in vivo phage-tagging approach that enables direct observation of phage outbreaks with single-virion resolution by live imaging. Here some highlights 👇 www.nature.com/articles/s41...
nature.com
Phollow reveals in situ phage transmission dynamics in the zebrafish gut microbiome at single-virion resolution
Nature Microbiology - ‘Phollow’ is a live imaging-based fluorescence tagging approach that can track phage replication and spread in situ with single-virion resolution.
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Sherry Pagoto, PhD @drsherrypagoto.bsky.social · 12/03/2025
New report shows that NIH grants fueled $95 billion in economic activity and 407,782 jobs in 2024. That's not to mention the countless lives that biomedical research has saved. Show me a better investment than that. www.forbes.com/sites/michae...
forbes.com
NIH Grants Fueled $95 Billion In FY 2024 Economic Activity, Finds New Report
National Institutes of Health grants generated almost $95 billion in economic activity nationwide in FY 2024 according to a new report by United for Medical Research.
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Vaughn Cooper @vscooper.micropopbio.org · 08/03/2025
This week in @nature.com, Joe Graves published a thunderous column "The financial shackling of historically Black universities in the United States." 🚨Despite underfunding, HBCUs graduate disproportionately high numbers of Black students in STEM. Screenshots follow: www.nature.com/articles/d41...
nature.com
The financial shackling of historically Black universities in the United States
Evolutionary biologist Joseph L. Graves Jr argues that — now more than ever — the United States should honour its commitments to Black higher education to diversify the science workforce.
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