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Harsha Gouda

@harshagouda.bsky.social
84 followers 143 following 12 posts

Post-doc at Dorrestein lab. Interested in all things metabolism, microbes and enzymes.

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Harsha Gouda @harshagouda.bsky.social · 05/09/2026
Another rage bait article by nature! Bunsen burners have been used for more than a century, and now they don’t work anymore?
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Harsha Gouda @harshagouda.bsky.social · 23/04/2026
🚨 I'm delighted to share that I'll be a funded through the Eric & Wendy Schmidt AI in Science Postdoctoral Fellowship! Excited to push the boundaries of ML in metabolomics for human health. Thank you to my mentor @pieterdorrestein.bsky.social and Dorrestein lab team!🚀
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Yasin El Abiead @yelabiead.bsky.social · 16/04/2026
Where has this molecule been detected before across samples, organisms, body parts, and environments? With StructureMASST, you can explore this directly by entering a molecule name and running a search in your browser. 🔗 structure-masst.gnps2.org 📄 www.nature.com/articles/s41...
structure-masst.gnps2.org
Streamlit
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Nature Biotechnology @natbiotech.nature.com · 15/04/2026
Structure-centric searching enables global mapping of the public metabolome - @pieterdorrestein.bsky.social @mingxunwang.bsky.social @yelabiead.bsky.social go.nature.com/481Sbmk
go.nature.com
Structure-centric searching enables global mapping of the public metabolome - Nature Biotechnology
StructureMASST enables pan-repository MS/MS searches using a chemical name or structure.
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Jack A Gilbert @gilbertjacka.bsky.social · 02/12/2025
Explore this gift article from The New York Times. You can read it for free without a subscription. www.nytimes.com/interactive/...
nytimes.com
The U.S. Is Funding Fewer Grants in Every Area of Science and Medicine (Gift Article)
A quiet policy change means the government is making fewer bets on long-term science.
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PLOS Biology @plosbiology.org · 25/11/2025
Sleep supports brain health partly by regulating fluid dynamics to clear waste. @ulvlarsen.bsky.social &co probe the relation between #sleep & fluid movement in the human #brain, finding that #SleepPressure & intensity have distinct effects on brain pulsations @plosbiology.org 🧪 plos.io/3XQWCL6
Sleep pressure and slow-wave-rich NREM sleep exert distinct effects on cerebral vasomotion and on brain pulsations driven by respiratory and cardiac forces. Heightened sleep pressure (following 35 h of wakefulness) promotes vasomotion (yellow box). Slow-wave-rich NREM sleep enhances brain pulsations driven by the respiratory and cardiac cycles—more so in gray and white matter than in the ventricles (red boxes). The respiration- and cardiac-driven brain pulsations also intensify with deeper sleep (N3 > N2) and correlate with EEG delta power, which is a measure of slow-wave activity (light vs. dark red boxes).
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Harsha Gouda @harshagouda.bsky.social · 31/10/2025
Get your paper reviewed before peer review at www.qedscience.com
qedscience.com
q.e.d Science
Critical Thinking AI for constructive criticism and science evaluation
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Ákos T Kovács @evolvedbiofilm.bsky.social · 09/08/2025
The mass spectrometry of microbiome-mediated metabolism of food: challenges and opportunities #CurrOpinMicrobiol by @harshagouda.bsky.social et al from @pieterdorrestein.bsky.social www.sciencedirect.com/science/arti...
sciencedirect.com
The mass spectrometry of microbiome-mediated metabolism of food: challenges and opportunities
With the exception of molecules acquired through the lungs, skin absorption, or part of a medication regime, nearly all molecules in our bodies origin…
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Harsha Gouda @harshagouda.bsky.social · 08/08/2025
The interactions between food, microbiome and host that modulate health can be complex. Here, we offer a perspective on how mass spectrometry can be leveraged to address some of these challenges to understand host and microbial metabolism of food. A step closer to personalized health and nutrition.
sciencedirect.com
The mass spectrometry of microbiome-mediated metabolism of food: challenges and opportunities
With the exception of molecules acquired through the lungs, skin absorption, or part of a medication regime, nearly all molecules in our bodies origin…
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Harsha Gouda @harshagouda.bsky.social · 30/05/2025
Poster is made, printed and ready to go! Looking forward to my first mass-spec conference #ASMS2025 at Baltimore next week!
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Nature @nature.com · 21/05/2025
Molecules in urine and blood can reveal how much of a person’s diet comes from ultra-processed foods go.nature.com/4kybHea
go.nature.com
How much ultra-processed food do you eat? Blood and urine record it
Samples could provide an objective measure of diets and help to unravel their contribution to disease.
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Eric Topol @erictopol.bsky.social · 24/04/2025
New @science.org Exposomics. We're not doing nearly enough to understand and mitigate our toxic environmental exposures. A very insightful perspective www.science.org/doi/10.1126/...
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Trenton Dailey-Chwalibóg @trenton.phd · 17/04/2025
Should you return home after earning your PhD abroad? This Nature article explores the dilemmas faced by international researchers considering a move back to their home countries. A thought-provoking read for anyone navigating global academic careers.  www.nature.com/articles/d41...
nature.com
Should I return to my home country after my PhD abroad?
A graduate student from southeast Asia, now based in a European country and missing her homeland, agonizes over her next career move.
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David Broadhurst @davidbroadhurst.bsky.social · 17/04/2025
QC:MXP version 2.0 is now available to download for free from my GitHub page: www.qcmxp.org Repeat-injection-based Quality Control, Batch Correction, Exploration & Data Cleaning. #Metabolomics #AnalyticalChemistry #Matlab
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Nature Portfolio @natureportfolio.nature.com · 07/04/2025
Individuals who were conceived in colder seasons are more likely to show higher brown adipose tissue activity, increased energy expenditure and a lower BMI, and lower fat accumulation around internal organs, suggests a study in Nature Metabolism. go.nature.com/4i3EYM0 🧪
This is figure 1, which shows season of fertilization predetermines the metabolic fate of brown adipose tissue in human adults.
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Julia M. Rohrer @dingdingpeng.the100.ci · 20/03/2025
New blog post! In which I explain the issue with mediation analysis and sketch out one way to deal with the underlying causal inference problem -- in just a bit over 1,000 words! If you have never found the time to read up on this, now is your chance. www.the100.ci/2025/03/20/r...
the100.ci
Reviewer notes: That’s a very nice mediation analysis you have there. It would be a shame if something happened to it.
Mediation analysis has gotten a lot of flak, including classic titles such as “Yes, but what’s the mechanism? (Don’t expect an easy answer)” (Bullock et al., 2010), “What mediation analysis can (not) ...
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Nature Metabolism @natmetabolism.nature.com · 07/03/2025
bit.ly
Discovery of metabolites prevails amid in-source fragmentation
Nature Metabolism, Published online: 28 February 2025; doi:10.1038/s42255-025-01239-4Discovery of metabolites prevails amid in-source fragmentation
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Nature @nature.com · 04/03/2025
Event organizers often overlook the visa-related difficulties that researchers in low- and middle-income countries face. This must change, says Kara Hanson go.nature.com/3DioEc0
go.nature.com
We moved a conference halfway around the globe to avoid visa discrimination
Event organizers often overlook the visa-related difficulties that researchers in low- and middle-income countries face. This must change.
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BioMassSpec @realbiomassspec.bsky.social · 01/03/2025
Discovery of metabolites prevails amid in-source fragmentation #NatMetab www.nature.com/articles/s42...
nature.com
Discovery of metabolites prevails amid in-source fragmentation - Nature Metabolism
Nature Metabolism - Discovery of metabolites prevails amid in-source fragmentation
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Pieter Dorrestein @pieterdorrestein.bsky.social · 28/02/2025
Another fun paper that was started by a good and important question by Prajit - an undergrad in the lab - about imputation. We then teamed up with the Kelley lab as they are good at such benchmarking in data science. So fun to work woth them. pubs.acs.org/doi/10.1021/...
pubs.acs.org
To Impute or Not To Impute in Untargeted Metabolomics─That is the Compositional Question
Untargeted metabolomics often produce large datasets with missing values. These missing values are derived from biological or technical factors and can undermine statistical analyses and lead to biase...
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Cell Press @cellpress.bsky.social · 27/02/2025
The #InternationalSpaceStation is overly sterile; making it “dirtier” could improve astronaut health, microbiologists say. cell.com/cell/fulltex... Learn more in @cp-cell.bsky.social @pieterdorrestein.bsky.social, Rob Knight
cell.com
The International Space Station has a unique and extreme microbial and chemical environment driven by use patterns
With long-term space travel and extraterrestrial habitation becoming feasible, understanding how space environmental exposures, microbial communities, and molecular profiles differ from Earth is cruci...
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Eric Topol @erictopol.bsky.social · 13/01/2025
A new resource rating >50,000 foods from 3 grocery stores (Walmart, Target, and Whole Foods) for degree of processing and breakdown of ingredients www.nature.com/articles/s43... Website for consumers www.truefood.tech
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Pieter Dorrestein @pieterdorrestein.bsky.social · 08/01/2025
Such a wonderful SIMB workshop on @gnps2.bsky.social covering classical mol networking, FBMN, ion identity based mol networking, FBMN-STATS, gnps-dashboard, CMMC-kb, Modifinder, MicrobeMASST, MassQL, and limited ReDU - many were covered at a workshop for the first time. 1/4
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Pieter Dorrestein @pieterdorrestein.bsky.social · 07/01/2025
So fun at SIMB teaching the gnps ecosystem.
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Karsten Suhre @ksuhre.bsky.social · 17/12/2024
Metabolic changes of the blood metabolome after a date fruit challenge doi.org/10.1016/j.jf... 7/12
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BioMassSpec @realbiomassspec.bsky.social · 20/12/2024
An accurate IDMS-based method for absolute quantification of phytohemagglutinin, a major antinutritional component in common bean #JFoodSci ift.onlinelibrary.wiley.com/doi/10.1111/...
ift.onlinelibrary.wiley.com
An accurate IDMS‐based method for absolute quantification of phytohemagglutinin, a major antinutritional component in common bean
Abstract Phytohemagglutinin (PHA), a natural tetramer comprising PHA-E and PHA-L subunits that preferentially bind to red and white blood cells, respectively, constitutes a significant antinutrition...
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ICTC13 @ictc13.bsky.social · 19/12/2024
Welcome to the wonderful #mzmine @mzmine.bsky.social team in Bluesky @bsky.app . So nice to have you in #ICTC13 metabolomics workshop ! Check it out at www.ictc13.gr
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Cameron Martino @cameronmartino.bsky.social · 19/12/2024
New tensor factorization paper out today — a fun collaboration with Pixu Shi, Liat Shenhav, Rob Knight, & Anru_Zhang! 🎉 Check it out here: genomebiology.biomedcentral.com/articles/10....
genomebiology.biomedcentral.com
TEMPTED: time-informed dimensionality reduction for longitudinal microbiome studies - Genome Biology
Longitudinal studies are crucial for understanding complex microbiome dynamics and their link to health. We introduce TEMPoral TEnsor Decomposition (TEMPTED), a time-informed dimensionality reduction ...
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Harsha Gouda @harshagouda.bsky.social · 19/12/2024
HAHAHA 🤯
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Harsha Gouda @harshagouda.bsky.social · 18/12/2024
I’m starting to fall in love with math again. It was enzyme kinetics in grad school, now it’s testing different models on clinical data.
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Bethany Brookshire @beebrookshire.bsky.social · 15/12/2024
What if I told you that if you have coyote "problems" (as in, you feel there are too many), killing them...can make it WORSE? Me on @rolandkays.com 's latest paper, so glad his lab is studying this! teamtrash.substack.com/p/hunt-more-...
teamtrash.substack.com
Hunt more coyote, get more coyote
Humans often assume killing will solve the problem. Here's yet another example of why we are wrong.
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Kai Kupferschmidt @kakape.bsky.social · 14/12/2024
Sadly, it’s a good time to once again share this amazing infographic that we ran at @science.org more than 7 years ago 🧪 #IDsky www.science.org/content/arti...
science.org
Here's the visual proof of why vaccines do more good than harm
See year by year how vaccines beat back nine dangerous infectious diseases
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Harsha Gouda @harshagouda.bsky.social · 14/12/2024
I heard back from the AHA post doc fellowship today, not the brightest of the news I received, but has been a good learning lesson.
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