David Broadhurst @davidbroadhurst.bsky.social · 14/08/2025Version 2.1 of the QC:MXP repeat-injection derived batch correction app is now available to download at qcmxp.org. I thought it would be fun to revisit an old data set from Craig Wheelock's lab - doi.org/10.1183/1399.... 16 batch, 880 subjects, 224 pooled QC injections, 100+ curated metabolites. 061
Reposted by David BroadhurstLorenzo Lorenzo-Luaces, PhD @lluaces.bsky.social · 15/07/2025For the love of god put the sample size in the abstract 1318028
Reposted by David BroadhurstJames MacRae @jamesmacraedonkey.bsky.social · 07/05/2025🚨 📢 I’m #hiring!!! I am looking for an experienced #metabolomics scientist with a particular focus on LC-MS. Please follow the link below for more details and how to apply! 📢 🚨 Applications close at 23:59 on May 23rd!!! www.crick.ac.uk/careers-stud...crick.ac.ukSenior/Principal Laboratory Research Scientist: Metabolomics & Lipidomics Specialist 297
Reposted by David BroadhurstNicholas Rattray @nikrat.bsky.social · 23/04/2025Happy to share our recent opinon piece on how the cross section of ageing, metabolism and palaeoanthropolgy research areas hold promise is uncovering novel routes in human evolution. authors.elsevier.com/a/1k%7E4KArD...authors.elsevier.com 041
Reposted by David BroadhurstDr Katherine Duncan @kateduncan.bsky.social · 23/04/2025Save the date: the 5th anniversary of the Glasgow Computational Biology Conference. 15th and 16th of September at University of Glasgow Advanced Research Centre. Details to follow soon! glasgow-compbio.github.io/conference/2...glasgow-compbio.github.ioGlasgow University Computational Biology Conference 2025 – Glasgow CompBio CommunityTake part in talks, networking and learning about everything computational biology! 022
Reposted by David BroadhurstDavid Broadhurst @davidbroadhurst.bsky.social · 17/04/2025QC:MXP version 2.0 is now available to download for free from my GitHub page: www.qcmxp.org Repeat-injection-based Quality Control, Batch Correction, Exploration & Data Cleaning. #Metabolomics #AnalyticalChemistry #Matlab 22312
Reposted by David BroadhurstJohannes Rainer @jorainer.bsky.social · 18/04/2025Updates in 🦕 #xcms #rstats #metabolomics package: 👉 retention time alignment against external data set 👉 chromatographic peak quality metrics 👉 performance improvements Available in @bioconductor.bsky.social release 3.21 🚀 Up next: memory-saving analysis of very large data sets 😎 #TeamMassSpec 1144
David Broadhurst @davidbroadhurst.bsky.social · 17/04/2025QC:MXP version 2.0 is now available to download for free from my GitHub page: www.qcmxp.org Repeat-injection-based Quality Control, Batch Correction, Exploration & Data Cleaning. #Metabolomics #AnalyticalChemistry #Matlab 22312
Reposted by David BroadhurstJohannes Rainer @jorainer.bsky.social · 11/04/2025And big thanks also to the @eubic-ms.org hackathon team contributing to our #SpectriPy package github.com/RforMassSpec... ! Next on the list submission of the package to 👉 @bioconductor.bsky.socialgithub.comGitHub - rformassspectrometry/SpectriPy: Interfacing R's Spectra package with the Python world.Interfacing R's Spectra package with the Python world. - rformassspectrometry/SpectriPy 0145
David Broadhurst @davidbroadhurst.bsky.social · 20/02/2025Wonderful to see this Nature Communications perspective paper from Dr. Kevin Mendez's PhD finally out. Part of great collaboration between metabolomic epidemiology researchers at Edith Cowan University & Harvard Medical School. www.nature.com/articles/s41...nature.comA roadmap to precision medicine through post-genomic electronic medical records - Nature CommunicationsThe authors outline a framework uniting electronic medical records with post-genomic data to capture real-time physiological changes via periodic molecular snapshots, enabling a shift from reactive tr... 090
Reposted by David BroadhurstEMN Metabolomics Society @emn-metsoc.bsky.social · 17/02/2025🚨 Abstract deadline alert! 🚨 Friendly reminder to submit your oral abstract before March 6 – don’t miss the chance to showcase your work at hashtag#MetSoc2025! Registration is now open: lnkd.in/eFZGi4CK #Metabolomics #EMN 01212
Reposted by David BroadhurstTomáš Pluskal @pluskal-lab.org · 17/02/2025We will be hosting the first @mzmine.bsky.social Community Meeting at @iocbprague.bsky.social. Please register if you wish to learn about the latest developments in mzmine. More info: docs.google.com/document/d/1... 02823
Reposted by David BroadhurstNatasa Giallourou @natasag.bsky.social · 18/02/2025🚨 Call for abstracts! 🚨 Submit your abstract for #MetSoc2025 in Prague - submissions close March 6! Don't miss the chance to showcase your work at the biggest event in #metabolomics. www.metabolomics2025.orgmetabolomics2025.orgHome - Metabolomics 2025 032
Reposted by David BroadhurstNicola Rennie @nrennie.bsky.social · 16/02/2025I'm really looking forward to running this "Git and GitHub for R Users" workshop for @r-ladies-stl.bsky.social! 📅 April 23rd 2025 ⏰ 11am CST / 5pm BST 📍 Online Register: www.meetup.com/rladies-st-l... #RStats #Git #GitHub #RLadiesmeetup.comGit and GitHub for R Users, Wed, Apr 23, 2025, 11:00 AM | MeetupIn this workshop, attendees will learn how to use GitHub in conjunction with RStudio. Contents * Understand why version control is necessary and useful. * Be able to coll 49327
Reposted by David BroadhurstFemales in Mass Spectrometry (FeMS+) @femalesinms.bsky.social · 10/02/2025Applications are open for the #FeMS+ 2025 Q2 Empowerment Awards! Thanks @brukercorporation.bsky.social for sponsoring! Apply here: airtable.com/appyGufCIumj... #TeamMAssSpec #WomenEmpowerment 0129
Reposted by David BroadhurstEMN Metabolomics Society @emn-metsoc.bsky.social · 07/02/2025🏆EMN Travel Awards are back for #MetSoc2025 in Prague! EMN Travel Award – Up to 4 grants for graduate (Master’s/PhD) & postdocs. 📍More info: metabolomics2025.org/awards #Metabolomics #EMN 078
Reposted by David BroadhurstProf Danny Altmann @daltmann.bsky.social · 04/02/2025@tomgauld.bsky.social - I thought this was terrific! 2456
Reposted by David BroadhurstDouglas Kell @dbkell.bsky.social · 31/01/2025Pleased to say that the follow-up paper w @resiapretorius on the proteomics of amyloidogenesis in microclot formation preprinted at www.biorxiv.org/content/10.1... has just been accepted. #TeamClotsbiorxiv.orgThe proteome content of blood clots observed under different conditions: successful role in predicting clot amyloid(ogenicity)A recent analysis compared the proteome of (i) blood clots seen in two diseases – sepsis and long COVID – when blood was known to have clotted into an amyloid microclot form (as judged by staining wit... 074
Reposted by David BroadhurstWolfgang Huber @wkhuber.bsky.social · 31/01/2025Come work at the European Molecular Biology Laboratory in the beautiful science & university city Heidelberg as a Research Software Engineer on R/Bioconductor tools for biological data science and AI ! embl.wd103.myworkdayjobs.com/EMBL/job/Hei... 23417
Reposted by David BroadhurstCristina Legido-Quigley @legidoquigley.bsky.social · 31/01/2025I did a list of #WomeinSTEM working in #metabolomics & #lipidomics and #datascience please join or share with others, use it for conferences, media & networking, mentoring, supporting, anything that helps, 300+ women have joined docs.google.com/document/u/0...docs.google.comLIST “WOMEN IN METABOLOMICS, LIPIDOMICS, PROTEOMICS AND RELATED DATA SCIENCE”NAME INSTITUTION COUNTRY Dr. Maria Eugenia Monge CIBION-CONICET Argentina Prof. Elaine Holmes Murdoch University- Imperial College London Australia- UK Dr Ruey-Leng Loo Murdoch University, Au... 0158
Reposted by David Broadhurstmetaspace2020.bsky.social @metaspace2020.bsky.social · 30/01/2025Ready to take your metabolite annotation to the next level? Join our first FREE webinar on Best Practices for Metabolite Annotation in Imaging MS with METASPACE! 🔗 Register now: eventbrite.com/e/best-pract... #Metabolomics #MassSpec #Imaging #METASPACEeventbrite.comBest Practices for Metabolite Annotation in Imaging MS with METASPACELearn the top tips and tricks for identifying metabolites in Imaging MS using METASPACE - the ultimate guide for metabolite annotation! 022
Reposted by David BroadhurstChristian Frezza @frezzalab.bsky.social · 23/01/2025Hi all, our lab will soon recruit a PhD student working within a very exciting MSCA Horizon Doctoral network working on ageing, UNION, which gathers some fantastic scientists. Please apply if your profile fits our project (see attached advert). Looking forward to working with you! 03533
Reposted by David BroadhurstDr. Ahna Skop @ahnaskop.bsky.social · 22/01/2025“Two researchers, one with bipolar disorder and ADHD, the other with autism, discuss supportive workplaces, building networks, and how and when to disclose diagnoses.”nature.comHow to be a brilliant ally to your neurodivergent lab mateTwo researchers, one with bipolar disorder and ADHD, the other with autism, discuss supportive workplaces, building networks, and how and when to disclose diagnoses. 0132
David Broadhurst @davidbroadhurst.bsky.social · 21/01/2025So happy to see (listen) to Phil Liggett commentating on the Tour Down Under (Channel 7). I started watching TdF under his guidance back in the 1980’s on C4 UK. He is a legend. Great stuff! 040
Reposted by David BroadhurstRandall Munroe @xkcd.com · 21/01/2025Chemical Formulas xkcd.com/3040 346255702044
David Broadhurst @davidbroadhurst.bsky.social · 20/01/2025It is going to be fun cycling home today. 🔆🚴♂️🥵 230
Reposted by David BroadhurstTim Ebbels @tebbels.bsky.social · 15/01/2025Calling computational #metabolomics people out there! Are you interested in working with #EU colleagues to analyse and model metabolomic data? We are looking for an enthusiastic and knowledgeable individual to join the #BiACEM project: www.imperial.ac.uk/jobs/search-...imperial.ac.ukHomeImperial College London is a world-leading university for science, technology, engineering, medicine and business (STEMB). Across our London campuses, and throughout our international network, we use ... 01112
David Broadhurst @davidbroadhurst.bsky.social · 14/01/2025The Metabolomics starter pack has passed 100 members. I do add people who follow me based on whether“metabolomics” is mentioned in your biography (or I know you personally). If you want to be added (or removed) let me know. Can I encourage people to actually write a biography. 🤦 go.bsky.app/J3VPYKmgo.bsky.appMetabolomicsJoin the conversation 020
Reposted by David BroadhurstMike Croucher @walkingrandomly.bsky.social · 13/01/2025If you have half an hour or so and want to learn something new, give the new MATLAB Coder OnRamp a try. Generate C and C++ code from MATLAB code. Used hugely in industry for getting code into production. matlabacademy.mathworks.com/details/matl...matlabacademy.mathworks.comMATLAB Coder Onramp | Self-Paced Online Courses - MATLAB & SimulinkLearn the basics of C and C++ code generation from MATLAB functions. You will learn the code generation workflow, including how to fix common compatibility issues and how to use MEX functions to call ... 162
Reposted by David BroadhurstAndy Tseng @andytseng.bsky.social · 07/01/2025Thrilled to share I’m joining the Whitehead Institute at #MIT as Director of IT & Digital Strategy! After 14 incredible years at #UniMelb, I’m excited to continue supporting world-class researchers, advance groundbreaking science, and start a new chapter in Boston! #Leadership #ResearchSky 6246
David Broadhurst @davidbroadhurst.bsky.social · 03/01/2025First ride of 2025. 33km Lake Joondalup loop. 040
David Broadhurst @davidbroadhurst.bsky.social · 31/12/2024Last ride of the year pushing me just over 3,000km for 2024 on the “new” bike. Not bad all things considered. I will be very happy if I can do the same in 2025. 220
Reposted by David BroadhurstPolitics News @politicsnewsusa.bsky.social · 10/12/2024BREAKING: Australia has introduced a new bill that will limit the total spending on a party by billionaires like Elon Musk to Just $20,000 This will ban billionaires from single-handedly buying Elections in Australia. 38820239
Reposted by David BroadhurstPaolo Crosetto @paolocrosetto.bsky.social · 20/12/2024I was today years old when I found this gem of a web app to explore 2500+ color palettes for R: r-graph-gallery.com/color-palett...r-graph-gallery.comR Color Palette FinderThe ultimate tool for finding the perfect color palette for data visualization with R and paletteer. Explore over 2000 palettes, see them in action on various charts, simulate color blindness, and exp... 825278
Reposted by David BroadhurstMatej Oresic @matejoresic.bsky.social · 18/12/2024Deadline extended to January 7th. New #postdoc / senior researcher position in our team at Turku #Metabolomics Centre (@BioscienceTurku / @UniTurku), in #massspectrometry #imaging. #MSimaging #lipidomics #proteomics 068
Reposted by David BroadhurstTobias Warnecke @tobiaswarnecke.bsky.social · 16/12/2024Please RT: Associate Professor position in my department at the University of Oxford. Broad search in molecular and cellular biology: my.corehr.com/pls/uoxrecru...my.corehr.comJob Details 17988
David Broadhurst @davidbroadhurst.bsky.social · 16/12/2024Back in Perth. Sunshine ☀️ & superb Aussie coffee. Thanks to all the lovely people who made my trip to the UK so special. Especially all the early career researchers to took the time to talk to me about my & their work during #metabomeeting2024. Great to see the future of metabolomics in safe hands. 0110
Reposted by David BroadhurstArvind Narayanan @randomwalker.bsky.social · 24/09/2024AI Snake Oil is out today! The book has been five years in the making. The first chapter is online. It is 30 pages long and summarizes the book’s main arguments. We're grateful for all the early interest and support. Let us know what you think of the book! www.aisnakeoil.com/p/starting-r... 58725
Reposted by David BroadhurstNicole Kearney @nicolekearney.bsky.social · 14/12/2024Hi Bluesky, I’m Nicole, Manager of the Australian branch of the Biodiversity Heritage Library @bhl-au.bsky.social, the world’s largest online repository of biodiversity literature. I work with museums, herbaria & libraries to make their collections openly accessible, discoverable & connected. 1/3 514736
Reposted by David BroadhurstCristina Legido-Quigley @legidoquigley.bsky.social · 13/12/2024News feature by Jessica Shugart in the best forum for #Alzheimer's research. It explains work by Carlos Cruchaga's team & cols, it discovers genes relationships to molecules in CSF & brain. I did a drawing for it, mega #omics www.alzforum.org/news/researc...alzforum.org‘MGWAS’ Ties Brain Metabolites to Alzheimer’s, Parkinson’s, More | ALZFORUM 033
David Broadhurst @davidbroadhurst.bsky.social · 11/12/2024Why does anyone think it is a good idea to submit a paper for review just before Christmas? Yet every year ... 281
Reposted by David BroadhurstTim Ebbels @tebbels.bsky.social · 10/12/2024We're hiring! Are you a #metabolomics scientist interested in working with #EU colleagues to analyse and model metabolomic data? We are looking for an enthusiastic and knowledgeable individual to join the #BiACEM project: www.imperial.ac.uk/jobs/search-...imperial.ac.ukDescriptionPlease note that job descriptions are not exhaustive, and you may be asked to take on additional duties that align with the key responsibilities ment... 01212
Reposted by David BroadhurstMarc-Emmanuel Dumas @marcedumas.bsky.social · 07/12/2024We’re hiring! UHPLC-HRMS metabolomics to investigate the microbiome-metabolite-immune axis in the transition from health to disease with the IMMEDIATE consortium. Deadline 10th Jan: www.imperial.ac.uk/jobs/search-...imperial.ac.ukDescriptionPlease note that job descriptions are not exhaustive, and you may be asked to take on additional duties that align with the key responsibilities ment... 01512
David Broadhurst @davidbroadhurst.bsky.social · 04/12/2024After 20 days in UK I finally found a decent cup of coffee. At the Rapha London clubhouse #AustralianCoffeeSnob 2110
Reposted by David BroadhurstPieter Dorrestein @pieterdorrestein.bsky.social · 03/12/2024The CMMC is hosting a reverse metabolomics workshop. The foundation of these papers www.nature.com/articles/s41..., www.cell.com/cell/fulltex... and www.biorxiv.org/content/10.1... - here searched @gnps2.bsky.social only now @metabolights.bsky.social and @metabolomics workbench as well. #metabolome 04825
David Broadhurst @davidbroadhurst.bsky.social · 03/12/2024For connoisseurs of inter-city UK train travel. First class on the TransPennine Express (Manchester <-> Glasgow) is ten times better than First Class on Avanti West (Glasgow <-> London) @tpexpress.bsky.social 140
David Broadhurst @davidbroadhurst.bsky.social · 02/12/2024THe #metabolomics starter pack is now up to 75 members. Again, if you would like to be added let me know. Equally if I have put you on the list by mistake let me know. go.bsky.app/J3VPYKm 214327