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GlyCosmos

@glycosmos.bsky.social
72 followers 104 following 33 posts

An official account for GlyCosmos Portal. The GlyCosmos Portal is a Web portal aiming to integrate the glycosciences with the life sciences. It consists of Standards, Repositories and Data Resources, providing information about genes, proteins, etc.

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Reposted by GlyCosmos
glycoexpasy.bsky.social @glycoexpasy.bsky.social · 11/08/2026
Attending @eccb-europe.bsky.social in Geneva this year? Then, you can join our workshop! Programme and registration is here: eccb2026.org/communities-... it's free 🙂 but hurry!
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Reposted by GlyCosmos
Waggoner Lab @labwaggoner.bsky.social · 14/08/2026
Receptor-tethered orthogonal IL-2 enhances regulatory T cell therapy @jem.org @gladstoneinst.bsky.social rupress.org/jem/article/...
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GlyCosmos @glycosmos.bsky.social · 14/08/2026
GlyCosmos Webinar 「GlycanBuilder: Draw Glycan Structures and Search Databases」を開催します! GlycanBuilderによる糖鎖構造の描画、DB検索、今後の開発計画をご紹介します。 8/19(水)16:00 JST 🎆 Hinako Terauchi 英語|参加無料 参加登録👇 us02web.zoom.us/meeting/regi... #GlyCosmos #GlycanBuilder #Glycoinformatics #glycotime
us02web.zoom.us
Welcome! You are invited to join a meeting: GlyCosmos Webinar on GlycanBuilder. After registering, you will receive a confirmation email about joining the meeting.
Welcome! You are invited to join a meeting: GlyCosmos Webinar on GlycanBuilder. After registering, you will receive a confirmation email about joining the meeting.
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GlyCosmos @glycosmos.bsky.social · 14/08/2026
🚀 GlyCosmos Webinar Alert! Want to master drawing glycan structures and searching databases? Join us for an introduction to GlycanBuilder! 🧬✨ #GlyCosmos #GlycanBuilder #glycotime🌋 📅 Date: Aug 19 (Wed), 16:00 JST (Free; English) 👤 Speaker: Hinako Terauchi 👇 Register: us02web.zoom.us/meeting/regi...
us02web.zoom.us
Welcome! You are invited to join a meeting: GlyCosmos Webinar on GlycanBuilder. After registering, you will receive a confirmation email about joining the meeting.
Welcome! You are invited to join a meeting: GlyCosmos Webinar on GlycanBuilder. After registering, you will receive a confirmation email about joining the meeting.
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GlyCosmos @glycosmos.bsky.social · 07/08/2026
We are excited to share a meeting report at 2nd GlyCosmos Symposium& Jamboree doi.org/10.1093/glyc... Participants worked on glycan recognition data to expand #LMGlycoRepo & tissue lectin-staining data. Join us at ACGG2026! *10/3–6 Tsukuba, Japan* CT #glycotime sites.google.com/view/glycosm...
doi.org
Meeting Report on the 2nd GlyCosmos Symposium & Jamboree — Community-driven integration of glycan recognition data
Yuka Akagi, Chiaki Nagai-Okatani, Eriko Fukuda, Sayaka Fuseya, Masae Hosoda, Chih-Chieh Lin, Kei Miyako, Hiroaki Sakaue, Takashi Sato, Reo Takeda, Issaku Y
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GlyCosmos @glycosmos.bsky.social · 06/08/2026
GlyCosmos Webinar in the GlySpace Alliance Series “GlycanBuilder: Draw Glycan Structures and Search Databases” August 19, 2026, 4:00 PM JST Introducing glycan drawing using GlycanBuilder, database searches using drawn glycans, and plans for the next major release. bit.ly/4wHgxff #glycotime
us02web.zoom.us
Welcome! You are invited to join a meeting: GlyCosmos Webinar on GlycanBuilder. After registering, you will receive a confirmation email about joining the meeting.
Welcome! You are invited to join a meeting: GlyCosmos Webinar on GlycanBuilder. After registering, you will receive a confirmation email about joining the meeting.
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GlyCosmos @glycosmos.bsky.social · 06/08/2026
🧬 New in GlyCosmos: You can now search for lectins by PDB Chemical Component Dictionary (CCD) code — the three-letter codes identifying monosaccharide residues in glycans. Available from Advanced Search and the GlyCosmos Lectins list. Try it out! 🔍 #glycosmos #glycotime
doc.glycosmos.org
Release Notes
GlyCosmos Portal Release Notes
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Reposted by GlyCosmos
NEJM.org @nejm.org · 23/07/2026
Alpha-gal syndrome is an IgE-mediated delayed hypersensitivity to galactose-α-1,3-galactose (alpha-gal), a carbohydrate found in mammalian meat but absent from human tissue. The condition is initiated by exposure to alpha-gal through tick bites. Learn more: nej.md/4wIygTh
Diagram illustrating the alpha-gal syndrome. Panel A shows the assay process with a test tube of blood, a test capsule, and molecular interactions involving cellulose in serum. Panel B depicts human acquisition and development of alpha-gal syndrome. The top section depicts sensitization pathways, highlighting cells from mammals, microbiomes, and other factors contributing to the syndrome. The bottom section shows symptom development with a person experiencing symptoms and indicating areas of pain or discomfort.
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Reposted by GlyCosmos
SFG @sfglycobiology.bsky.social · 20/07/2026
The excitement is building! Join us November 8–11, 2026 in Atlanta, GA for the SFG 2026 Annual Meeting—four days of groundbreaking science, collaboration, and connection with the global glycobiology community. Register today and start planning your experience! sfg.memberclicks.net/program
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GlyCosmos @glycosmos.bsky.social · 08/06/2026
☄️ Registration & accommodation are now open for the 3rd GlyCosmos Jamboree (Oct 3–6, 2026, Tsukuba, Japan)! Join us for glycoscience data integration & collaboration. 🌐 Website: sites.google.com/view/glycosm... 🏨 Register: j-lppf2.jp/acgg2026th/ #glycotime #GlyCosmos
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GlyCosmos @glycosmos.bsky.social · 20/05/2026
GlyCosmos Webinar in the GlySpace Alliance Series “How to use GlyTouCan version 4” June 22, 2026, 4:00 PM JST This webinar will cover the major update to GlyTouCan version 4, including glycan registration/browsing, etc. Registration bit.ly/4tLaDro More details: bit.ly/49STWD5 #glycotime
us02web.zoom.us
Welcome! You are invited to join a meeting: Sponsored by GlyCosmos. After registering, you will receive a confirmation email about joining the meeting.
GlyTouCan v4 Webinar
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GlyCosmos @glycosmos.bsky.social · 19/05/2026
#GRable in #GlyCosmos enables site-specific glycoform analysis using Glyco-RIDGE, an MS1-based method exploiting chromatographic co-elution and glycan heterogeneity to cluster intact glycopeptide signals. It complements MS2-based workflows improving glycoform analysis #glycotime glycosmos.org/grable
glycosmos.org
GlyCosmos Portal
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GlyCosmos @glycosmos.bsky.social · 20/04/2026
[Jamboree] The 3rd GlyCosmos Jamboree website is now live! 🌐 Join us Oct 3–6, 2026, in Tsukuba, Japan 🇯🇵 for data integration and glycoscience collaboration. Satellite event of #ACGG2026. Details: sites.google.com/view/glycosm... Past summary: doi.org/10.1093/glyc... #glycotime #GlyCosmos
sites.google.com
GlyCosmos Jamboree
News
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GlyCosmos @glycosmos.bsky.social · 15/04/2026
#LfDB in #ACGG-DB and #GlyCosmos provides quantitative lectin–glycan interaction data, including absolute affinity constants(Ka) measured by automated FAC-FD. With high-quality binding data and tools, LfDB is a valuable resource,w/ further FAC dataset expansion planned. #glycotime glycosmos.org/lfdb
glycosmos.org
GlyCosmos Portal
LfDB provides quantitative interaction data in terms of the affinity constants (Ka) of a series of lectins toward a panel of pyridylaminated (PA) glycans obtained by an automated frontal affinity chromatography with fluorescence detection (FAC-FD) system.
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GlyCosmos @glycosmos.bsky.social · 11/03/2026
#GlycoProtDB in #ACGG-DB and #GlyCosmos is a glycoprotein database curating experimentally identified N-glycosylated proteins and their glycosylation sites based on IGOT-LC/MS-based glycoproteomics, with site-specific glycoform information. #glycotime glycosmos.org/glycoprotdb
glycosmos.org
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GlyCosmos @glycosmos.bsky.social · 17/02/2026
#GGDB (GlycoGene) in #ACGG-DB is a database focusing on glycogenes within #GlyCosmos and provides key information, including substrate specificity, on glycosyltransferases and sulfotransferases to support glycosylation/glycan biosynthesis analysis across species #glycotime glycosmos.org/ggdb
glycosmos.org
GlyCosmos Portal
GGDB is a database which includes genes associated with glycan synthesis such as glycosyltransferase, sugar nucleotide synthases, sugar-nucleotide transporters, and sulfotransferases.
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GlyCosmos @glycosmos.bsky.social · 13/02/2026
#GGDB (GlycoGene) in #ACGG-DB is a database focusing on glycogenes within #GlyCosmos and provides key information—including substrate specificity—on glycosyltransferases and sulfotransferases to support glycosylation/glycan biosynthesis analysis across species #glycotime
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GlyCosmos @glycosmos.bsky.social · 03/12/2025
#GlycoMaple in #GlyCosmos can visualize mouse and human glycosylation pathways to help visualize the effects of glycogene expression on glycosylation #glycotime at glycosmos.org/glycomaple
glycosmos.org
GlyCosmos Portal
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GlyCosmos @glycosmos.bsky.social · 25/11/2025
[New Publication] We are excited to share our meeting report on the 1st GlyCosmos Symposium & Jamboree in Glycobiology! DOI: doi.org/10.1093/glyc... Participants advanced glycan-binding molecule resources through hands-on work on lectin curation and FAIR glycoinformatics (AIST Group) #GlyCosmos
doi.org
Meeting Report on the 1st GlyCosmos Symposium & Jamboree —Community-Driven Expansion of Glycan-Binding Molecules Resources
Chiaki Nagai-Okatani, Masae Hosoda, Winnie Hsiung, Takashi Sato, Hiroaki Sakaue, Sayaka Fuseya, Eriko Fukuda, Issaku Yamada, Kiyoko F Aoki-Kinoshita, Atsus
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Reposted by GlyCosmos
Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 15/10/2025
#glycotime!
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GlyCosmos @glycosmos.bsky.social · 14/10/2025
[LM-GlycomeAtlas] Building on the LM-GlycoRepo release, the LM-GlycomeAtlas now enables interactive exploration of tissue glycome mapping data in #GlyCosmos. glycosmos.org/lmglycomeatlas
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Chris Ashwood @cashwood.proteaglyco.com · 04/09/2025
Have we made it to the point where we can sneak in Pokémon names as method acronyms, relatively undetected?
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Harvard Med Cell Biology @harvardcellbio.bsky.social · 21/06/2025
New work from @xingulab.bsky.social @sshaolab.bsky.social & Elledge lab report structure of Midnolin-proteasome complex & its role in controlling myeloma via ubiquitin-independent degradation. www.cell.com/molecular-ce...
cell.com
Structural basis for the midnolin-proteasome pathway and its role in suppressing myeloma
Nardone et al. elucidate the mechanism of the midnolin-proteasome pathway, showing how midnolin achieves nuclear substrate selection and how established proteasomal components are repurposed to enable...
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Reposted by GlyCosmos
kiyokof.bsky.social @kiyokof.bsky.social · 27/06/2025
An exciting #glycotime meeting planned covering anything glycan ranging from carbohydrate chemistry, analytics, immunology to informatics with speakers from around the world!
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Reposted by GlyCosmos
Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 12/06/2025
Thank you to the scientists and staff at NIH/NCATS for spending the day showing me your impressive facilities for translational science and drug development. Bringing hope to patients with unmet need 🙏 🇺🇸
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Daniel Bojar @dbojar.bsky.social · 27/05/2025
glycowork v1.6 is out & we're now at 1,000 commits in almost 4 years! Next to Universal Input and a better GlycoDraw, we have a faster back-end, bigger&better datasets, more convenience, and so much more github.com/BojarLab/gly...
github.com
Release v1.6.0 · BojarLab/glycowork
Changelog [1.6.0] All glycan graphs are now directed graphs (nx.Graph --> nx.DiGraph), flowing from the root (reducing end) to the tips (non-reducing ends), which has led to code changes in quite ...
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GlyCosmos @glycosmos.bsky.social · 12/06/2025
[Update] LM-GlycoRepo repository The GlyCosmos Portal has released a novel "LM-GlycoRepo" repository for lectin-assisted multimodal (LM) data, including lectin microarrays. Version. 1.0 is introduced in a recently published article in the Journal of Proteome Research: doi.org/10.1021/acs....
doi.org
LM-GlycoRepo Version 1.0: A Novel Repository System for Mouse Tissue Glycome Mapping Data
Lectin microarray (LMA) is a high-sensitive profiling method of protein glycosylation. The increasing use of this method in many studies has led to a growing demand for a repository system that meets ...
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Reposted by GlyCosmos
Daniel Bojar @dbojar.bsky.social · 12/05/2025
A few GlycoDraw-related highlights of the upcoming glycowork v1.6 update (dropping in a few weeks): - our very own rendering engine (GlycoDraw for the masses, thanks to glycorender!); - SNFG-gradients; - automated Alt text; - reverse-highlighting; - even more support for highly complex sequences
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 07/05/2025
Nice #glycotime review that pulls together the emerging story of glycosyltransferase specificity for cellular substrates chemistry-europe.onlinelibrary.wiley.com/doi/10.1002/...
chemistry-europe.onlinelibrary.wiley.com
Glycoproteins, Glycolipids, or Both: Why do Glycosyltransferases Recognize Different Acceptors?
Glycosylation is an important post-translational modification catalyzed by glycosyltransferases (GTs), which comprise a large group of enzymes with diversified specificity. Most GTs show high specifi...
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GlyCosmos @glycosmos.bsky.social · 23/05/2025
🌲GlyGen GlyGen is a global initiative funded by NIH and NIGMS to support glycoscience research by integrating diverse data from glycomics, genomics, proteomics, and biochemistry. It unifies information from multiple international sources into a single platform. glygen.org/home/
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GlyCosmos @glycosmos.bsky.social · 26/03/2025
🐝 GlyCounter An intuitive platform designed for seamless integration into glycoproteomic workflows, enabling users to enhance sample and data preparation, and post-acquisition identification by simply evaluating the glycan content within glycoproteomic datasets. www.biorxiv.org/content/10.1...
biorxiv.org
Extracting informative glycan-specific ions from glycopeptide MS/MS spectra with GlyCounter
Glycopeptide tandem mass spectra typically contain numerous glycan-specific fragments that can inform several features of glycan modifications, including glycan class, composition, and structure. Whil...
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Reposted by GlyCosmos
Soragni:Lab @alice.soragnilab.com · 18/03/2025
The NCI grant supporting the Columbia comprehensive cancer center was terminated. Tell me how terminating support for cancer research helps the economy. taggs.hhs.gov/Content/Data...
taggs.hhs.gov
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Stanford Medicine @stanfordmedicine.bsky.social · 18/03/2025
Thousands joined this year’s SHE (Stanford Health Empowerment) Talks—online and in person—for an essential convo on brain health w/ Karen Adams, MD, and Sharon Sha, MD. They shared real steps women can take to support brain function for years to come. youtu.be/BwtKYocLrgo?...
youtu.be
SHE Talks 2025: Secrets to Brain Vitality
YouTube video by Stanford Medicine
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Reposted by GlyCosmos
GlyGen @glygen.bsky.social · 18/12/2024
Discover how mass spectrometry is revolutionizing vaccine development and infectious disease research! Watch Dr. John Cipollo's insightful GlyGen Webinar now: youtu.be/-5e8MaD8yKI Don't forget to follow and subscribe for more cutting-edge science content! 🔔 #FDA #glycotime
youtu.be
John Cipollo - Mass Spectrometry Driven Glycoconjugate Analysis
YouTube video by GlyGen myGlyGen
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GlycoNet @glyconet.bsky.social · 06/02/2025
🚨 Hiring – Chaire Professeur Junior (CPJ) in Carbohydrate Chemistry! 🚨 ICBMS (Lyon, France) seeks a tenure-track researcher in oligosaccharide & glycoconjugate synthesis. Learn more: canadianglycomics.ca/training/opp...
canadianglycomics.ca
Opportunities - Canadian Glycomics Network
Linkedin-in Twitter Facebook-f Instagram Youtube Envelope Main Menu About About GlycoNet People Administration Corporate Policies Governance Board of Directors Executive Committee Finance, Audit & Ris...
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GlyCosmos @glycosmos.bsky.social · 04/02/2025
🌹GlyCosmos Youtube Channel Not sure how to use the GlyCosmos tools? No worries! We’ve provided tutorial videos to guide you through the process. Check them out and get started! #Glycan #Database www.youtube.com/@glycosmosch...
youtube.com
GlyCosmos
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Bacterial Genomics @bactgenrss.bsky.social · 28/01/2025
Discovery of two novel Flavobacterium species with potential for complex polysaccharide degradation www.nature.com/articles/s41...
nature.com
Discovery of two novel Flavobacterium species with potential for complex polysaccharide degradation - Scientific Reports
Scientific Reports - Discovery of two novel Flavobacterium species with potential for complex polysaccharide degradation
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UniTmp @unitmporg.bsky.social · 01/02/2025
Structure of WzxE the lipid III flippase for Enterobacterial Common Antigen polysaccharide. Check this #membrane #protein in the UniTmp database: pdbtm.unitmp.org/entry/9g95
royalsocietypublishing.org
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GlyCosmos @glycosmos.bsky.social · 30/01/2025
🛰️ Materials Project The Materials Project computes the properties of all inorganic materials and provides the data, along with analysis algorithms, freely to materials researchers. It serves as an excellent resource for materials design. #database #BerkeleyLab next-gen.materialsproject.org
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GlyCosmos @glycosmos.bsky.social · 30/01/2025
🦠ChEMBL Are you looking for data on bioactive molecules with drug-like properties? ChEMBL brings together chemical, bioactivity, and genomic data to aid the translation of genomic information into effective new drugs. #database www.ebi.ac.uk/chembl/
ebi.ac.uk
ChEMBL - ChEMBL
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GlyCosmos @glycosmos.bsky.social · 30/01/2025
This research presents a framework that guarantees statistical reliability based on user-defined risk and delivers calibrated probabilities instead of raw ML scores for any protein search model. More details 👇 www.nature.com/articles/s41...
nature.com
Functional protein mining with conformal guarantees - Nature Communications
This study presents a protein search framework with conformal prediction, enabling statistically reliable annotation of protein function. The method improves homology search, enzyme classification, an...
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Reposted by GlyCosmos
Innovative Genomics Institute @innovativegenomics.bsky.social · 06/01/2025
With a new $1.25 million gift from @rsrt.bsky.social to @jenniferdoudna.bsky.social & @doudna-lab.bsky.social postdoc Kai Chen, IGI is developing lipid nanoparticles for editing the brain to treat Rett syndrome & other brain disorders. Read more: ow.ly/PVSy50UACMH 🧬 🧠
innovativegenomics.org
IGI is Awarded New Funding to Develop CRISPR Tools for Editing the Brain
A new project co-led by IGI founder Jennifer Doudna and Doudna lab researcher Kai Chen has been awarded $1.25 million from the Rett Syndrome Research Trust (RSRT) to develop CRISPR genome-editing tool...
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GlyCosmos @glycosmos.bsky.social · 24/01/2025
🌲 IMEx - The International Molecular Consortium IMEx is a database providing physical molecular interaction data from a broad taxonomic range of organisms. You can find detailed protein-protein/protein-glycan interaction data curated from publications. #protein #glycan imexconsortium.org
imexconsortium.org
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GlyCosmos @glycosmos.bsky.social · 18/01/2025
🪲UniLectin🪲 UniLectin is a specialized database focused on lectins that play critical roles in various biological processes. The platform offers detailed information on lectin sequences, structures, carbohydrate-binding specificities, and biological functions. pubmed.ncbi.nlm.nih.gov/37889052/
pubmed.ncbi.nlm.nih.gov
HumanLectome, an update of UniLectin for the annotation and prediction of human lectins - PubMed
The UniLectin portal (https://unilectin.unige.ch/) was designed in 2019 with the goal of centralising curated and predicted data on carbohydrate-binding proteins known as lectins. UniLectin is also in...
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GlyCosmos @glycosmos.bsky.social · 16/01/2025
🌴 GlycoShape GlycoShape is an OA database that provides 3D structural data and information on glycans, which can be downloaded or used with Re-Glyco to reconstruct glycoproteins from the RCSB PDB or EMBL-EBI AlphaFold repositories. glycoshape.org
glycoshape.org
GlycoShape
GlycoShape is an OA database of glycans 3D structural data and information that can be downloaded or used with Re-Glyco to rebuild glycoproteins from the RCSB PDB or EMBL-EBI AlphaFold repositories
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Sarafan ChEM-H @stanford-chemh.bsky.social · 31/12/2024
#YearInReview A needle-free, affordable vaccine could be on the horizon, thanks to groundbreaking research led by @mfgrp.bsky.social & @djenetbousbaine.bsky.social . The key? A harmless skin bacterium: buff.ly/4gORu1L
“We all hate needles — everybody does.”
 
Institute Scholar Michael Fischbach, Djenet Bousbaine, and team’s findings in mice could turn skin bacterium S. epidermidis into a cheap, needle-free vaccine that won’t cause inflammation or make you feel sick. Clinical trials could start in 2-3 years.
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 17/12/2024
So much to love in this recent study by Matt Paszek and coworkers at Cornell, bioorthogonal glycan imaging using expansion microscopy, published ACS Cent. Sci. pubs.acs.org/doi/10.1021/...
pubs.acs.org
Bio-orthogonal Glycan Imaging of Cultured Cells and Whole Animal <italic toggle&#x3D;"yes">C. elegans</italic> with Expansion Microscopy
Complex carbohydrates called glycans play crucial roles in regulating cell and tissue physiology, but how they map to nanoscale anatomical features must still be resolved. Here, we present the first nanoscale map of mucin-type O-glycans throughout the entirety of the Caenorhabditis elegans model organism. We constructed a library of multifunctional linkers to probe and anchor metabolically labeled glycans in expansion microscopy (ExM). A flexible strategy was demonstrated for the chemical synthesis of linkers with a broad inventory of bio-orthogonal functional groups, fluorophores, anchorage chemistries, and linker arms. Employing C. elegans as a test bed, metabolically labeled O-glycans were resolved on the gut microvilli and other nanoscale anatomical features. Transmission electron microscopy images of C. elegans nanoanatomy validated the fidelity and isotropy of gel expansion. Whole organism maps of C. elegans O-glycosylation in the first larval stage revealed O-glycan “hotspots” in unexpected anatomical locations, including the body wall furrows. Beyond C. elegans, we validated ExM protocols for nanoscale imaging of metabolically labeled glycans on cultured mammalian cells. Together, our results suggest the broad applicability of the multifunctional reagents for imaging glycans and other metabolically labeled biomolecules at enhanced resolutions with ExM.
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kiyokof.bsky.social @kiyokof.bsky.social · 17/12/2024
GlyCosmos v4 paper has just been published #glycotime link.springer.com/article/10.1...
link.springer.com
Updates implemented in version 4 of the GlyCosmos Glycoscience Portal - Analytical and Bioanalytical Chemistry
Glycosylation, characterized by its complexity and diversity, is a common system across all domains of life. The glycosylation of proteins or lipids imparts them with structural and functional roles, ...
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kiyokof.bsky.social @kiyokof.bsky.social · 09/12/2024
GlyCosmos v4.1 update has been released today! Small minor bug fixes are still planned but the release notes will show a new lectin microarray repository LM-GlycoRepo as well as MicroGlycoDB are now officially released!
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kiyokof.bsky.social @kiyokof.bsky.social · 06/12/2024
www.sciencedirect.com/science/arti... MicroGlycoDB is published! Thanks to all the contributors! #glycotime
sciencedirect.com
MicroGlycoDB: A database of microbial glycans using Semantic Web technologies
Glycoconjugates are present on microbial surfaces and play critical roles in modulating interactions with the environment and the host. Extensive rese…
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