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Thomas Frank

@frankfishlab.bsky.social
520 followers 305 following 5 posts
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Reposted by Thomas Frank
Zebrafish Rock! @zebrafishrock.bsky.social · 9h
"Using molecular markers, tract tracing, and quantitative comparisons of cellular 12 distribution patterns, we report a detailed neuroanatomical atlas of the adult Danionella dracula (“Dracula fish”) telencephalon." New #Danionella work from Perelmuter & Bass at Cornell 🐟 @danionella.bsky.social
(A) Dorsal view of Dracula fish head. 
(B) Adult Dracula fish and zebrafish brains.
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MODOLFOR @modolfor.bsky.social · 22/09/2026
We had amazing talks at the #ECRO2026 symposium "Modulation of chemosensation" organized by @modolfor.bsky.social members @silkesachse.bsky.social and @katrinvogt.bsky.social. Big thanks to all speakers: Nilay Yapici, Markus Knaden, @frankfishlab.bsky.social and Markus Rothermel
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Ivan Manzini @xenofrog.bsky.social · 07/07/2026
🐸 Postdoc Position (m/f/d) in Neurobiology! The project focuses on how smell shapes feeding behavior in poison frogs and is conducted in collaboration with Prof. Jennifer Stynoski (Costa Rica). 🌎🌿 . For more information and to apply, please use the link below. www.uni-giessen.de/de/ueber-uns...
uni-giessen.de
Research Associate / Postdoctoral Researcher (m/f/d) “Olfactory Control of Behavior in Amphibians”
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Meryl Malezieux @merylneuro.bsky.social · 23/03/2026
1/8 New preprint alert! How are signals from the heart encoded in the brain? What could be the functional implications of cardioception? We found that neurons in the posterior insular cortex are precisely tuned to heartbeats, and that this cardio-insular coupling supports emotion coding in mice.
biorxiv.org
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Thomas Frank @frankfishlab.bsky.social · 17/03/2026
Exciting new results from our neighbors in the @mace-lab.bsky.social! Using functional ultrasound imaging, they look at brain-wide activity patterns in response to arousing events, showing propagation from subcortical regions to the cortex, and find a surprisingly weak modulation by noradrenaline!
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bioRxiv Neuroscience @biorxiv-neursci.bsky.social · 09/03/2026
Arousal elicits a brain-wide hemodynamic wave independent of locus coeruleus noradrenergic tone www.biorxiv.org/content/10.64898/20…
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samuelsy20.bsky.social @samuelsy20.bsky.social · 09/01/2026
In @elife.bsky.social: Pallium-encoded valence-specific chemosensory amplification of eye-body coordination in larval zebrafish doi.org/10.7554/eLif...
doi.org
Pallium-encoded valence-specific chemosensory amplification of eye-body coordination in larval zebrafish
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Nils Kroemer @nbkroemer.bsky.social · 08/12/2025
Out now in @ebiomedicine.bsky.social 🚨. Hunger often affects our mood, but is this a conscious or a subconscious process? Using continuous glucose monitoring, we show that differences in mood are driven by hunger ratings, not just glucose. #neuroskyence 🩺 www.thelancet.com/journals/EBI...
A graphical abstract showing the research question and the operationalization of the study.
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Juliet Turner @juliet-turner.bsky.social · 17/11/2025
POV: you are a young woman celebrating a recent academic success
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Mostafa Aakhte @aakhte.bsky.social · 14/11/2025
🎉 I am very glad to share that our paper on the rapid isotropic light-sheet microscope has just been published in Nature Biotechnology @natbiotech.nature.com. 🔗 Read the full article: www.nature.com/articles/s41...
nature.com
Isotropic, aberration-corrected light sheet microscopy for rapid high-resolution imaging of cleared tissue - Nature Biotechnology
A light-sheet microscope built from off-the-shelf components enables high-resolution clear tissue imaging.
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Elisa Galliano @elisagalliano.bsky.social · 15/11/2025
Massive FOMo seeing the posts of people heading to #SfN2025, all that beach...ehm.. science I’m missing 😭 If you’re there, go say hi to the brilliant Bruno Pilcher and the INSS crew, who just built my lab a custom multiphoton microscope with a spatial light modulator that is pure chef’s kiss 👨‍🍳💋✨
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Zebrafish Rock! @zebrafishrock.bsky.social · 10/11/2025
New work from Baier Lab 🧠 🐟 🔗 to paper: www.sciencedirect.com/science/arti...
sciencedirect.com
Molecular delineation of a retina-dependent photoneuroendocrine pathway in zebrafish
Many vertebrates, including fish, amphibians, and reptiles, dynamically adjust their body color to the perceived brightness of the ambient background.…
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Gilles Vanwalleghem @drgillesv.bsky.social · 10/11/2025
Ohhh, that looks cool, also quite a few nice refs to the immune role of neuropeptides, including in the gut
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Daniel Münch @dahaniel.muench.bio · 28/10/2025
New paper with @gili-ezranevo.bsky.social & Silvia Henriques from @ribeirocarlitos.bsky.social's lab out in @currentbiology.bsky.social. Appetite, driven by amino acid need 🥚🍖 reshapes olfactory receptor expression so flies 🪰 seek bacteria 🦠 and fermented cues 🥫 to restore nutritional balance ⚖️.
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Pawel Burkhardt @pawelburkhardt.bsky.social · 27/10/2025
First neurons didn’t appear overnight. We trace their roots to ancient secretory cells - showing how lifestyle & behavior shaped the evolution of first synapses.🧠🌊 #Evolution #Neuroscience Our latest in @natrevneuro.nature.com Link: rdcu.be/eMX3E @jeffcolgren.bsky.social @msarscentre.bsky.social
rdcu.be
The evolutionary origins of synaptic proteins and their changing roles in different organisms across evolution
Nature Reviews Neuroscience - Recent studies have shed further light on the evolutionary origins of chemical synapses, In this Review, Colgren and Burkhardt explore how ancient proteins were...
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Neil Shubin @neilshubin.bsky.social · 24/11/2024
Your reminder that many of the muscles, nerves and bones you use to hear and talk with correspond to gill structures in fish. 🧪 #evolution #paleontology
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Matt Lovett-Barron @mlovettbarron.bsky.social · 30/09/2025
Our latest study on the neurobiology of collective behavior is now posted as a preprint, led by UCSD PhD student Jo-Hsien Yu @anitajhyu.bsky.social @ucsandiego.bsky.social @danionella.bsky.social www.biorxiv.org/content/10.1...
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Nicole Rust @nicolecrust.bsky.social · 27/09/2025
The most universally agreed upon property that sets emotion/affect apart from everything else is valence: approach/avoid; pleasant/unpleasant. Here they target its computation in flies, where you can really figure out the biology. We know so little about how valence is computed by brains. Exciting!
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Katrin Vogt @katrinvogt.bsky.social · 27/09/2025
How is valence computed in the brain? Check out our new preprint about a single cell that integrates excitatory and inhibitory input across modalities according to valence and impacts behavioral decisions. An exciting collaboration across many labs. Enjoy reading! www.biorxiv.org/content/10.1...
biorxiv.org
A multisensory, bidirectional, valence encoder guides behavioral decisions
A key function of the brain is to categorize sensory cues as repulsive or attractive and respond accordingly. While we have some understanding of how sensory information is processed in the sensory pe...
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Raunak Basu @raunakbasu.bsky.social · 26/09/2025
Ever wonder if there are spatial maps in the brain outside the hippocampal-entorhinal regions? In this preprint, we describe a novel spatial map in the orbitofrontal cortex (OFC) that preserves the topological arrangements and distance between locations. However, ... www.biorxiv.org/cgi/content/...
biorxiv.org
The orbitofrontal cortex forms a context-generalized spatial schema that preserves topology and distance
Flexible and efficient navigation requires the brain to construct maps that are both topological, preserving the relationships between locations, and schematic, enabling generalization across environm...
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Dr. Liz Haynes 🐟🔬 @drlizhaynes.bsky.social · 26/09/2025
Want to image the adult zebrafish brain? Here's a nifty design that I made with the help of a talented master's student, Corey Steinhauser. Supporting files here! morgridge.org/research/lab...
morgridge.org
A 3D-Printable device for non-invasive neuroimaging of adult zebrafish - Morgridge Institute for Research
Short Summary: This device is designed for use with an upright multiphoton microscope for neuroimaging of the adult and juvenile zebrafish. It allows for fast and reproducible mounting of fish
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Emre Yaksi @emreyaksi.bsky.social · 16/09/2025
Check out this exciting study led by Anh-Tuan Trinh from our lab, where we investigated how thalamocortical-like circuits in the zebrafish pallium receive, represent, and integrate sensory information: 🔗 doi.org/10.1101/2025...
doi.org
Hierarchical processing of sensory information across topographically organized thalamocortical-like circuits in the zebrafish brain
Thalamocortical projections contribute to the spatial organization and functional hierarchies of the mammalian cortex. Primary sensory cortices receive topographically segregated information from firs...
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Emilie Macé @mace-lab.bsky.social · 11/09/2025
We currently have open positions for PhD and Postdocs! Interested in learning fUS: please apply! brainwidenetworks.uni-goettingen.de/open-positio...
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Thomas Frank @frankfishlab.bsky.social · 11/09/2025
Exciting new results now published in Science: responses to visual objects are boosted in the brain's spatial navigation system. Read more in the thread below! Congratulations to all the authors!!
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Viola Priesemann @violapriesemann.bsky.social · 19/07/2025
Physik studieren? Oder ein anderes Fach? In Göttingen geht jetzt beides, mit dem "Bachelor Interdisziplinär", der Physik mit spannenden Disziplinen Eurer Wahl, wie z.B. Künstlicher Intelligenz, Philosophie, Neurowissenschaften, ... kombiniert. www.uni-goettingen.de/de/studium/6...
uni-goettingen.de
Studiengang Physik interdisziplinär - Georg-August-Universität Göttingen
Webseiten der Georg-August-Universität Göttingen
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The Transmitter @thetransmitter.bsky.social · 22/08/2025
A. James Hudpseth, who died 16 August at age 79, devoted his 50-year career to untangling how the ear converts sound into electrical signals. By @callimcflurry.bsky.social www.thetransmitter.org/hearing/reme...
thetransmitter.org
Remembering A. James Hudspeth, hair cell explorer
Hudspeth, who died 16 August at age 79, devoted his 50-year career to untangling how the ear converts sound into electrical signals.
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Kristen Kwan @blockintheback.bsky.social · 07/07/2025
🚨🚨🚨 Tol2kit announcement! We have rebuilt the wiki that was corrupted a few months ago! We’re in the process of also linking it to the original address. Please visit us here: tol2kitkwan.genetics.utah.edu Thank you for your patience!! #zebrafish #transgenesis #plasmids #sharing
tol2kitkwan.genetics.utah.edu
tol2kit for kwan lab
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Dinu F Albeanu @dinanthos.bsky.social · 26/03/2025
New preprint on common algorithms and evolutionary inventions that may account for apparent idiosyncratic encoding of odor concentration across species millions of years apart by taking advantage of divisive normalization: steered by Yang Shen, @arkarupbanerjee.bsky.social and Saket Navlakha. 1/3
doi.org
An evolutionarily conserved scheme for reformatting odor concentration in early olfactory circuits
Understanding how stimuli from the sensory periphery are progressively reformatted to yield useful representations is a fundamental challenge in neuroscience. In olfaction, assessing odor concentration is key for many behaviors, such as tracking and navigation. Initially, as odor concentration increases, the average response of first-order sensory neurons also increases. However, the average response of second-order neurons remains flat with increasing concentration – a transformation that is believed to help with concentration-invariant odor identification, but that seemingly discards concentration information before it could be sent to higher brain regions. By combining neural data analyses from diverse species with computational modeling, we propose strategies by which second-order neurons preserve concentration information, despite flat mean responses at the population level. We find that individual second-order neurons have diverse concentration response curves that are unique to each odorant — some neurons respond more with higher concentration and others respond less — and together this diversity generates distinct combinatorial representations for different concentrations. We show that this encoding scheme can be recapitulated using a circuit computation, called divisive normalization, and we derive sufficient conditions for this diversity to emerge. We then discuss two mechanisms (spike rate vs. timing based) by which higher order brain regions may decode odor concentration from the reformatted representations. Since vertebrate and invertebrate olfactory systems likely evolved independently, our findings suggest that evolution converged on similar algorithmic solutions despite stark differences in neural circuit architectures. Finally, in land vertebrates a parallel olfactory pathway has evolved whose second-order neurons do not exhibit such diverse response curves; rather neurons in this pathway represent concentration information in a more monotonic fashion on average, potentially allowing for easier odor localization and identification at the expense of increased energy use. ### Competing Interest Statement The authors have declared no competing interest.
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Zebrafish Rock! @zebrafishrock.bsky.social · 10/03/2025
🔗 to original research: www.nature.com/articles/s42...
nature.com
Methylene blue at recommended concentrations alters metabolism in early zebrafish development - Communications Biology
Methylene Blue is an antifungal additive widely used in zebrafish embryo medium. At recommended concentrations, it exerts acute metabolic effects. This represents a previously unappreciated confound i...
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Jan-Matthis Lueckmann @janmatthis.bsky.social · 04/03/2025
⚡️ Excited to introduce ZAPBench, our #ICLR2025 spotlight: The Zebrafish Activity Prediction Benchmark measures progress in predicting neural activity within an entire vertebrate brain (70k+ neurons!) Explore interactive visualizations, datasets, code + paper: google-research.github.io/zapbench 🧠🧪
google-research.github.io
ZAPBench
ZAPBench evaluates how well different models can predict the activity of over 70,000 neurons in a novel larval zebrafish dataset.
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Claire MB @clairemb90.bsky.social · 21/02/2025
New paper! We studied how inhibitory circuits shape the processing of olfactory information using a tight interplay between modeling and experiments. Collaboration between @fmiscience.bsky.social and @frankfishlab.bsky.social . doi.org/10.1016/j.ce...
doi.org
Redirecting
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Thomas Frank @frankfishlab.bsky.social · 02/12/2024
Exciting opportunity! Strongly encourage to apply.
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Adrien Peyrache @apeyrache.bsky.social · 02/12/2024
🚨New(ish) preprint In mice, visual objects are encoded in the navigation syst, not much in the visual cx, certainly because they are used for orientation. This new version now includes cool comp work from @dlevenstein.bsky.social using @kenmiller.bsky.social's SSNs. www.biorxiv.org/content/10.1...
biorxiv.org
Visual objects refine head direction coding
Animals use visual objects to guide navigation-related behaviors, from hunting prey, to escaping predators, to exploring the world. However, little is known about where visual objects are encoded in t...
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Kevin Mitchell @wiringthebrain.bsky.social · 28/11/2024
Order matters: neurons in the human brain fire in sequences that encode information www.nature.com/articles/d41...
nature.com
Order matters: neurons in the human brain fire in sequences that encode information
A timing-based code for semantic knowledge in humans complements the established role of firing rates in neural coding.
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Thomas Frank @frankfishlab.bsky.social · 25/11/2024
Very exciting work! Congratulations to the entire team.
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Micah G. Allen @micahgallen.com · 21/10/2024
Starter packs are great, but they can only have 150 accounts on them. Check out my much larger list of Brain and Mind researchers here - and let me know if you would like to be added! #neuroskyence #psychscisky bsky.app/profile/mica...
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Nicole Rust @nicolecrust.bsky.social · 14/11/2024
Flushed cheeks, racing hearts, nervous tummies - all the stuff of where emotion meets interoception (the feeling of what's happening in our bodies). Which brain region seems to be involved? You guessed it, Insula! It's Day 5 of Insula week; let's talk about emotion & interoception. (A thread).
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Gergő A. Nagy @gergoanagy.bsky.social · 01/11/2023
Aversive stimulus-tuned responses in the CA1 of the dorsal hippocampus www.nature.com/articles/s41...
nature.com
Aversive stimulus-tuned responses in the CA1 of the dorsal hippocampus - Nature Communications
How fearful events are represented in the hippocampus remains unclear. Here, the authors describe aversive stimulus-triggered single neuron and population responses as well as alterations of the spati...
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Guido Meijer @guidomeijer.com · 03/11/2023
We're happy to share the extension of the ZETA-test into a full-fledged statistical family. 📈👨‍👩‍👧‍👦 Now you can also include more cells in your GCaMP data, and perform two-sample comparisons, all binning-free! With Jorrit Montijn and Alexander Heimel. www.biorxiv.org/content/10.1... #neuroscience
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bioRxiv Neuroscience @biorxiv-neursci.bsky.social · 30/10/2023
Synaptic Zn2+ contributes to deleterious consequences of spreading depolarizations www.biorxiv.org/content/10.1101/202…
biorxiv.org
Synaptic Zn2+ contributes to deleterious consequences of spreading depolarizations https://www.biorxiv.org/content/10.1101/2023.10.27.564408v1
Spreading depolarizations (SDs) are profound waves of neuroglial depolarization that can propagate r
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Florian Jug @florianjug.bsky.social · 27/10/2023
😱📣 BlueSky-ers: WE NEED YOUR HELP!!! 🙏 All of you who ever liked a lecture of mine... All of you who liked one of the courses I teach in... All of you I work(ed) with in one way or another... All of you who see my desperation! 😜 PLEASE re-post! 🙏 careers.humantechnopole.it/o/postdoc-in...
careers.humantechnopole.it
Postdocs in Artificial Intelligence
Human Technopole (HT) is an interdisciplinary life science research institute, created and supported by the Italian Government, with the aim of developing innovative strategies to improve human health
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Vincent Taschereau-Dumouchel @vincenttd.bsky.social · 24/10/2023
In our new pre-print, we found that "fear profiles" can be decoded from the ventral visual stream whether participants report being afraid of the stimuli or not. It is the interaction between the prefrontal and visual cortices that seemed to support subjective fear www.biorxiv.org/content/10.1...
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Zebrafish Rock! @zebrafishrock.bsky.social · 21/10/2023
Cited more than 1300 times, 'The behaviour and ecology of the zebrafish, Danio rerio' by Spence et al. (2007) highlights the special abilities of a small cyprinid found on the Indian subcontinent. A more recent take by Parichy (2015) expands on this in the context of evolution. #ZebrafishFunFacts
Zebrafish and their geographic range.
(A) Historic and more recent sites where zebrafish have been reported in India, Nepal, Bangladesh and possibly Myanmar (Spence et al., 2006; Engeszer et al., 2007b; Spence et al., 2008; Whiteley et al., 2011; Arunachalam et al., 2013). (B) Zebrafish from several populations in northeastern India (Engeszer et al., 2007b). The upper two fish are males and the lower two fish are females; males tend to have a slightly yellow cast ventrally. (C) A group of zebrafish (a single fish is highlighted with the arrow) in a stream-side pool in Meghalaya, India, north of Bangladesh. Scale bar: 5 mm (B). Image credits: D Parichy.
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Mackenzie Weygandt Mathis @trackingactions.bsky.social · 07/10/2023
I’m hiring!! Want to join our team? We need another software engineer! 🔥 hit me up on Linkedin ⬇️
linkedin.com
Mackenzie Mathis, PhD on LinkedIn: The Mathis Lab of Adaptive Motor Control
NEW! Software engineer position in NeuroAI 🔥 The  Mathis Group of Computational Neuroscience & AI (UPAMATHIS, https://mathisgroup.org) and Mathis Laboratory…
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Zebrafish Rock! @zebrafishrock.bsky.social · 11/10/2023
The shoal is up over 200 now 🤩 If you are looking for #zebrafish tweeps to follow, check our followers list. Most have found us 🙏 #RockOn
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bioRxiv Neuroscience @biorxiv-neursci.bsky.social · 09/10/2023
Differential encoding of odor and place in mouse piriform and entorhinal cortex www.biorxiv.org/content/10.1101/202…
biorxiv.org
Differential encoding of odor and place in mouse piriform and entorhinal cortex https://www.biorxiv.org/content/10.1101/2023.10.05.561119v1
Associating odor cues with spatial information in the environment is critical for animal behavior. T
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Micah G. Allen @micahgallen.com · 05/10/2023
#compneuro 🧠🤖
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Michael Okun @michael-okun.bsky.social · 02/10/2023
Brain state transitions primarily impact the spontaneous rate of slow-firing neurons - now out in CellReports doi.org/10.1016/j.ce... #neuroskyence #compneuro
doi.org
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Celtic Karla @celtickarla.bsky.social · 27/09/2023
Indiana University Bloomington is hiring assistant professor in Animal Behavior. #neurojobs #neuroscience
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CLaE @claeneuro.bsky.social · 26/09/2023
Nature Neuroscience Interoceptive rhythms in the www.nature.com/articles/s41...
nature.com
Interoceptive rhythms in the brain - Nature Neuroscience
Engelen et al. review in animals and humans how the CNS senses cardiac, respiratory and gastric rhythmic activity, and detail the range of cognitive functions impacted, from perceptual detection up to...
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