Reposted by Emily Kolenbrander Hojared toettcher @toettch.bsky.social · 24/07/2026New Toettchlab paper alert! Harrison Oatman just published his beautiful work combining software design for "smart" microscopy+optogenetics and some really beautiful work understanding EGFR-driven collective cell migration. www.cell.com/cell-systems... 213942
Reposted by Emily Kolenbrander HoBeatrice Ramm @beatriceramm.bsky.social · 22/06/2026Very excited to announce that my paper with @toettch.bsky.social from my time as a Fellow at Princeton's Center for the Physics of Biological Function @cpbf.bsky.social is finally out as a preprint! Here is the link if you want to check it out: www.biorxiv.org/content/10.6... A thread: (1/10)biorxiv.orgA modular live-cell biosensor for extracellular protease activityExtracellular protease activity plays key roles in cell and tissue behavior, processing cell surface proteins, ligands and the extracellular matrix. Extracellular proteases can be subject to complex p... 1143
Reposted by Emily Kolenbrander HoStefano Di Talia @ditalialab.bsky.social · 26/05/2026@drsusanna.bsky.social paper is now out in its final form. Relative to the original preprint, we now show additional mutant data and a better way to display heat maps of gene activation. www.cell.com/current-biol...cell.comRapid transcriptional response to a dynamic morphogen by time integrationUsing quantitative live imaging, Brantley et al. reveal that cells decode dynamic BMP signaling during dorsal patterning of the Drosophila embryo by integrating activity over time. These results advan... 0248
Reposted by Emily Kolenbrander HoMary Mirvis @marymirvis.bsky.social · 13/05/20261/13 So excited to share our new preprint!! How do organelles pack together in a crowded cytoplasm? we know organelles interact via contact sites, but how does competition for space contribute to organelle morphology and interactions? @wallaceucsf.bsky.social www.biorxiv.org/content/10.6... 38326
Reposted by Emily Kolenbrander HoKatherine W. Rogers @katwrog.bsky.social · 13/05/2026New preprint from my lab! Will Anderson developed a transgenic #zebrafish ubiquitously expressing an optogenetic FGF/ERK activator. We're having a lot of fun with it and think you will too! www.biorxiv.org/content/10.6...biorxiv.org 03611
Emily Kolenbrander Ho @emkolen.bsky.social · 22/04/2026New review on optogenetics in development is out in @genesdev.bsky.social with @toettch.bsky.social and Yang Gao! 💙💡🔦 genesdev.cshlp.org/content/earl... We aim to capture why opto is such a powerful tool for devbio and how future advances can make it even better. Some highlights: 1114
Reposted by Emily Kolenbrander HoEszter Posfai @eposfai.bsky.social · 02/08/2025Thrilled to share our work using live imaging to understand how Epiblast (future embryo proper) and Primitive Endoderm (future extraembryonic tissues) cell fates segregate in the preimplantation mouse embryo. Gargantuan effort led by amazing @rpkimyip.bsky.social, David Denberg and Denis Faerberg! 13812
Emily Kolenbrander Ho @emkolen.bsky.social · 22/07/2025pYtags - our in vivo biosensors for receptor tyrosine kinases - in all their beauty on the cover of Cell Reports! Read more here: www.cell.com/cell-reports... 59120
Emily Kolenbrander Ho @emkolen.bsky.social · 01/07/2025Excited to share that our work building in vivo biosensors for receptor tyrosine kinases (pYtags!) is now out www.cell.com/cell-reports... 34019
Reposted by Emily Kolenbrander HoSusanna Brantley @drsusanna.bsky.social · 10/06/2025Excited to share the bulk of my postdocotoral work from the @ditalialab.bsky.social on how cells interpret dynamic morphogen signaling during development! Many thanks to our collaborators & coauthors @shelbyflies.bsky.social, Massimo Vergassola, Jacqueline Janssen, and Anna Chao. 4204
Reposted by Emily Kolenbrander HoStephanie Woo @itsthewoolab.bsky.social · 30/05/2025Website and registration will open soon for the West Coast SDB meeting, Aug 14–17 at Cal-Poly SLO! Abstract deadline for talks is July 7. Final deadline for abstracts (posters) and registration is July 31. We will have prizes for best undergrad, grad, and post doc presentations! #wcsdb2025 1/4 12618
Reposted by Emily Kolenbrander Hojared toettcher @toettch.bsky.social · 21/04/2025I'd like to share a little bit of happy lab news in these chaotic times: a new preprint, driven by the brilliant Qinhao Cao! www.biorxiv.org/content/10.1... We address a big challenge in synbio: If you give me a protein "X", how can I give you a version of X whose activity is controlled by a kinase? 27831
Reposted by Emily Kolenbrander HoKatherine W. Rogers @katwrog.bsky.social · 21/04/2025Happy to share a new preprint from my lab! We characterize the on/off kinetics, light dosage-dependence, and more for a suite of optogenetic signaling activators in zebrafish embryos 💡 www.biorxiv.org/content/10.1...biorxiv.orgAn optogenetic toolkit for robust activation of FGF, BMP, and Nodal signaling in zebrafishCell signaling regulates a wide range of biological processes including development, homeostasis, and disease. Accessible technologies to precisely manipulate signaling have important applications in ... 910436
Reposted by Emily Kolenbrander HoMary Mirvis @marymirvis.bsky.social · 19/04/2025New(ish) preprint! 📰What whole-cell patterns emerge from the arrangement, morphologies, and interactions of organelles in the 3D space of the cell? What would we see if we could gather ALL the whole-cell reconstruction data that's out there in one place? www.biorxiv.org/content/10.1... 🧵 1/11biorxiv.orgA scoping study of the whole-cell imaging literature: a foundational corpus, potential for mesoscale data synthesis, and implications for standardization of an emerging fieldThe level of cellular organization bridging the mesoscale and whole-cell scale is coming into focus as a new frontier in cell biology. Great progress has been made in unraveling the complex physical a... 22611
Reposted by Emily Kolenbrander Hojared toettcher @toettch.bsky.social · 25/03/2025I'm so happy to report that our preprint on light-induced collective cell migration has now been published in Cell Systems! This project was a lot of fun and will be the basis for a lot of our ongoing & future work.cell.comLarge-scale control over collective cell migration using light-activated epidermal growth factor receptorsProgrammable control over tissue movement is a fundamental challenge for tissue engineering and wound healing. Suh, Thornton, et al. discovered that a light-controlled EGF receptor controls long-range... 25017
Reposted by Emily Kolenbrander HoEszter Posfai @eposfai.bsky.social · 22/03/2025How many cells do you need to establish PCP? The magic number is 3! Beautiful work by Lena Basta in Danelle Devenport's lab. Happy to have contributed. www.science.org/doi/10.1126/...science.orgEpithelial polarization by the planar cell polarity complex is exclusively non–cell autonomousFor cells to polarize collectively along a tissue plane, asymmetrically localized planar cell polarity (PCP) complexes must form intercellular contacts between neighboring cells. Yet, it is unknown wh... 26120
Reposted by Emily Kolenbrander HoDaniel Alber @danielalber.bsky.social · 06/03/2025Developmental systems have regions that deform actively or passively from their active neighbors. We use a ring of tissue as a model to investigate this boundary-driven morphogenesis in its biological context, learning something about gastrulation and possibly blastopore geometries in the process! 0122
Reposted by Emily Kolenbrander HoEszter Posfai @eposfai.bsky.social · 05/03/2025A duo of preprints on the dynamics of the first cell fate decision in mouse by Madeleine Chalifoux (first grad student in the lab!) and Maria Avdeeva (Flatiron). We use quantitative live imaging of key cell fate determinants to follow the segregation of inner cell mass and trophectoderm lineages. 12611
Reposted by Emily Kolenbrander HoSociety for Developmental Biology @socdevbio.bsky.social · 29/01/2025The Society for Developmental Biology has released a statement on the Unprecedented Disruptions to Biomedical Research in the United States. 6233125
Emily Kolenbrander Ho @emkolen.bsky.social · 07/01/2025Have you ever wanted to *see* receptor activity in embryos? If so, our new preprint is for you! In it, we showcase a new live-cell biosensor for visualizing receptor tyrosine kinase activity in living embryos – pYtags! www.biorxiv.org/content/10.1... 315452
Reposted by Emily Kolenbrander HoJeremy Reiter @reitergroup.bsky.social · 06/01/2025New preprint from Alex Long, Tim Stearns, Jessica Feldman, Lillian Fritz-Laylin and colleagues! Chytrids are neat, understudied and ecologically important as frog pathogens. Shown here, they also remodel their centrioles during cilia disassembly prior to mitosis: www.biorxiv.org/content/10.1...biorxiv.orgDynamic remodeling of centrioles and the microtubule cytoskeleton in the lifecycle of chytrid fungiCells reorganize in space and time to move and divide - complex behaviors driven by their internal cytoskeleton. While we have substantial knowledge of the molecular parts and rules of cytoskeletal as... 043
Reposted by Emily Kolenbrander HoLevayer Lab @levayerr.bsky.social · 05/01/2025Wishing you all the best for 2025 ! ...and a little late thread on our recent preprint studying how tissue growth is affected by mild induction of apoptosis. Drosophila wing disc readjusts global tissue size by modulating dev. time without local proliferation boost. www.biorxiv.org/content/10.1...biorxiv.orgDevelopmental delay ensures global tissue size robustness upon local induction of apoptosisThe capacity of our tissues to cope with external and internal stress relies on the tight coupling between cell proliferation, cell growth and cell death. This coupling is assumed to be based on compe... 33813
Emily Kolenbrander Ho @emkolen.bsky.social · 23/12/2024Can’t wait for all the amazing things to come from the Ramm lab! 010
Reposted by Emily Kolenbrander HoBeatrice Ramm @beatriceramm.bsky.social · 22/12/2024Thrilled to announce that in January I will be opening my own lab at the Friedrich Miescher Laboratory @mpi-bio-fml.bsky.social of the Max Planck Society @maxplanck.de in lovely Tübingen, Germany! 1123