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Derek Severi Lundberg

@derekseveri.bsky.social
1.6K followers 767 following 89 posts

Plant / microbe biologist. PhD UNC-CH (USA), postdoc MPI for Biology (Germany), group leader SLU Uppsala (Sweden) www.LundbergLand.org

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Derek Severi Lundberg @derekseveri.bsky.social · 17/05/2026
lone flowering branch.. somatic mutation, or "guerilla grafting"? Living in the same city as @charlesmelnyk.bsky.social , one can't assume natural causes...
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Derek Severi Lundberg @derekseveri.bsky.social · 13/05/2026
5 weeks today. after a second inquiry the chief editor identified a "technical glitch". Without the inquiry I guess we could have been "under evaluation" for years.
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Derek Severi Lundberg @derekseveri.bsky.social · 08/05/2026
> 1 month initial decision on whether to send for review or desk reject is killing us. Never waited this long pre-review before...
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Derek Severi Lundberg @derekseveri.bsky.social · 13/04/2026
Visualizing contigs in draft assemblies - I coin this a "mallard plot"
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Derek Severi Lundberg @derekseveri.bsky.social · 11/04/2026
written by "Bill Nye the Science Guy", for those of us from those generations www.ms.now/opinion/arte...
ms.now
Opinion | As Artemis II splashes down, the Trump admin is trying to slash NASA’s budget
Bill Nye shares his plans to fight the Trump administration’s proposed cuts to NASA.
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Derek Severi Lundberg @derekseveri.bsky.social · 09/04/2026
the sensitivity of "tagIMseq" will be broadly useful for CRISPR-associated transposon work. Ruling out off-target insertions in resuspended colonies with minimal effort and cost investment is critical because targeting isn't always perfect.
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Asaf Levy @asaflevylab.bsky.social · 28/02/2026
A new paper from @dorruss12.bsky.social and Jeff Dangl on two flagellins in plant-associated Sphingomonas used for motility or host colonization. www.biorxiv.org/content/10.6...
biorxiv.org
Specialization of independently acquired flagellar FliC proteins in plant-associated Sphingomonas balances swimming and immunogenicity
Plants monitor their environment for microbial invaders using pattern-recognition receptors that detect microbe-associated molecular patterns (MAMPs). Flagellin, the main component of bacterial flagellum, contains the flg22 epitope recognized by the plant immune receptor FLS2. Immune recognition can create an evolutionary conflict, requiring bacteria to balance flagellar function and immune evasion. Here, we show that plant-associated Sphingomonads resolve this constraint by partitioning two flagellar functions, motility and colonization, across two divergent and independently acquired flagellin genes. Comparative genomics revealed widespread coexistence of FliC proteins expressing either an immunogenic variant (FliC-H) or a non-immunogenic variant (FliC-L). The non-immunogenic FliC-L is necessary and sufficient for full directional swimming, whereas FliC-H is dispensable for swimming, but sufficient for full attachment and colonization. Flagellin expression patterns mirror these functions. Thus, FLS2 recognizes the flagellar variant required for colonization rather than motility, potentially restricting colonizing bacteria from entering internal leaf and root tissues. ### Competing Interest Statement The authors have declared no competing interest. European Molecular Biology Organization, https://ror.org/04wfr2810, ALTF 743-2019 U.S. National Science Foundation, https://ror.org/021nxhr62, IOS-2416244 Howard Hughes Medical Institute, https://ror.org/006w34k90, Jefferey L. Dangl Natural Sciences and Engineering Research Council, https://ror.org/01h531d29, 532852-2019 Knut and Alice Wallenberg Foundation, https://ror.org/004hzzk67, 2021.0102
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Dor Russ @dorruss12.bsky.social · 28/03/2026
What if plant immunity doesn’t stop bacteria from arriving - but from staying? Excited to share our new Dangl Lab paper (doi.org/10.1073/pnas.2535583123), asking a fundamental co-evolutionary question: which flagellar function is targeted by plant immunity? #Coevolution #Plant-Microbiome #PNAS 🧵1/8
doi.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Ezgi Mehmetoglu Boz @ezgiboz.bsky.social · 07/04/2026
A quick thread summarizing our new bioRxiv preprint on using CASTs for DNA barcoding to tell "look-alike" bacteria apart (Sphingomonas edition)!! Enjoy the read! ✨
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Derek Severi Lundberg @derekseveri.bsky.social · 07/04/2026
When organisms look similar, you can use a tag to tell them apart. We wanted to tag our collection of diverse Sphingomonas bacteria with DNA barcodes to distinguish them. We planned to use Tn7, until we saw new reports about CRISPR-associated transposons (CASTs).
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Derek Severi Lundberg @derekseveri.bsky.social · 29/10/2025
There are too many independent softwares called "targetfinder"...
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Harmit Singh Malik @harmitmalik.bsky.social · 20/09/2025
Any academic folks on H1B visas (even with stamps in passports) please get legal advice from your University attorneys before leaving the US.
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Honour McCann @honour.bsky.social · 18/09/2025
There’s a leak - and a conceptual artist - at the Max Planck 👌
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Ewan Birney @ewanbirney.bsky.social · 15/09/2025
Bioinformaticians / computational biologists take note - know where you should take your OS tool chain from and do not introduce backdoors.
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Derek Severi Lundberg @derekseveri.bsky.social · 13/09/2025
record 17,058 Marie Curie proposals in 2025 vs. 10,360 in 2024!!! the reason is pretty obvious, but wow that is a huge jump marie-sklodowska-curie-actions.ec.europa.eu/news/msca-po...
marie-sklodowska-curie-actions.ec.europa.eu
MSCA Postdoctoral Fellowships 2025 receives record number of 17,058 proposals
This year’s annual MSCA Postdoctoral Fellowships call has attracted considerable interest from the research community with 17,058 proposals submitted.
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Oliver Bossdorf @bossdorf.bsky.social · 10/09/2025
Job Alert! The University of Tübingen is hiring a FULL PROFESSOR (W3) in FUNCTIONAL ECOLOGY! Come and join our institute, and maybe our new excellence clusters @terra-cluster.org and @greenrobust.de. @gfoesoc.bsky.social @britishecologicalsociety.org @ecologicalsociety.bsky.social Please repost!
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James Lyle @radgrammar.bsky.social · 04/09/2025
In my experience, conference speakers are generally people who know stuff worth hearing, and not people who are great at public speaking. Listening to the content while ignoring whatever annoys you about the delivery is a good skill to cultivate, and you owe it to your intellect.
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Dr. Lucky Tran @luckytran.com · 04/09/2025
The “problem” with vaccines? They so effective at preventing deaths that they create generations of people that question whether disease was a problem in the first place because they have never experienced the horrors of a world without vaccines.
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Derek Severi Lundberg @derekseveri.bsky.social · 03/09/2025
this is so strange!!!!!!!
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Katharine Hayhoe @katharinehayhoe.com · 29/08/2025
@nature.com I love this article - but WHY are the only share options to X and Facebook when the whole point of the article is that science-based posts get more shares here? www.nature.com/articles/d41...
nature.com
Research posts on Bluesky are more original — and get better engagement
Bluesky posts about science garner more likes and reposts than similar ones on X.
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Derek Severi Lundberg @derekseveri.bsky.social · 28/08/2025
reviewing for a major international journal and 1 in 6 refs are papers written in Chinese. Titles, journal names, and abstracts are English, so you don't realize it from the ref. list.("Journal of Plant Nutrition and Fertilizers".) I can't judge these.. Journal updating policy on ref language.
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Klaus Schlaeppi @kschlaeppi.bsky.social · 25/08/2025
SynCom of maize root bacteria: in team work, they detox differently. Interacting they redirect the metabolisation to an alternative degradation product. Credits: @lisathoenen.bsky.social, Dr. Christine Pestalozzi & teams @unibas.ch and @unibe.ch. journals.asm.org/doi/10.1128/...
journals.asm.org
Synthetic communities of maize root bacteria interact and redirect benzoxazinoid metabolization | mSphere
We investigated how maize root bacteria—alone or in community—tolerate and metabolize antimicrobial compounds of their host plant. We found that the capacity to metabolize such a compound impacts bact...
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pussyfullawasps 🗡️ joa (they) @pussyfullawasps.bsky.social · 15/08/2025
this seems like a very good idea actually
reddit screenshot r/technology
70 people here

Al's Biggest Threat: Young People W...
4.3k upvotes • 442 comments
SonofRodney • 6h
I recently heard about a teacher who instead of trying to circumvent students using ai, which is impossible, she made assignments by going "ask ChatGPT to write a report on this subject, and then research how and why it's wrong".
Not only did the students discover that chatGPT is extremely wrong a lot of the time, it also lead them to realize that they should not use it as a primary source.
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 14/08/2025
1/2 What's best: a field-first or lab-first approach? No easy answers but differences between lab and field should not be seen as failure but motivate further inquiry and allow complementary discovery. Read our thoughts on this here: www.sciencedirect.com/science/arti...
sciencedirect.com
Lab to field: Challenges and opportunities for plant biology
Plant-microbe research offers many choices of model and strain and whether a field-first or lab-first approach is best. However, differences between l…
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Derek Severi Lundberg @derekseveri.bsky.social · 13/08/2025
www.sciencedirect.com/science/arti... How much environmental chaos to embrace in plant-microbe research, and to what end? A commentary on setting (with all choices OK as long as all options considered) w/ bergelsonlab.org, @fabriceroux7.bsky.social, @plantevolution.bsky.social, tkarasovlab.org
authors.elsevier.com
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Derek Severi Lundberg @derekseveri.bsky.social · 06/08/2025
This extension turns off google AI on the chrome browser, for any others who don't want to read the often-wrong AI overview! chromewebstore.google.com/detail/bye-b...
chromewebstore.google.com
Bye Bye, Google AI: Turn off Google AI Overviews, Discussions and Ads - Chrome Web Store
Filter Google search results to hide AI overviews, ads, discussions or videos. You choose.
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Jessica Budke 🌱🥼🔬 @mossplants.bsky.social · 02/08/2025
Know an Evolutionary Genomicist looking for a faculty position? Join us in EEB @utknoxville.bsky.social Position is open for studying any organism, but personally I have some botany bias. 🌱 Apply before Sept 19 for full consideration. apply.interfolio.com/170735 Please share widely. Thanks!
apply.interfolio.com
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 02/08/2025
1/3 New preprint led by Shanshan Wang, in collaboration with the Timmermans lab. Several groups have presented sc/snRNA-seq analyses of Arabidopsis leaves after bacterial infection before. Is there anything left to discover? Turns out: Yes. #plantscience www.biorxiv.org/content/10.1...
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Sean Gibbons 🦠💩 @gibbological.bsky.social · 31/07/2025
You can get an accurate estimate of total bacterial biomass from stool metagenomes by simply normalizing by host read count, without needing any additional measurements. Excellent work by UW Master's student Gechlang Tang in @asm.org #mSystems Journal. journals.asm.org/doi/10.1128/... 🧵
journals.asm.org
Metagenomic estimation of absolute bacterial biomass in the mammalian gut through host-derived read normalization | mSystems
In this study, we asked whether normalization by host reads alone was sufficient to estimate absolute bacterial biomass directly from stool metagenomic data, without the need for synthetic spike-ins, ...
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Gautam Shirsekar @coevolution.bsky.social · 28/07/2025
Come join EEB at the University of Tennessee at Knoxville. Evolutionary Genomics, Assistant Professor, Ecology & Evolutionary Biology, Fall 2026 apply.interfolio.com/170735 functional and evolutionary genomics in any system 🌱, 🦠, or 🦌 (including 👫)
apply.interfolio.com
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
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Amy Diehl, Ph.D. @amydiehl.bsky.social · 20/07/2025
Study finds A.I. LLMs advise women to ask for lower salaries than men. When prompted w/ a user profile of same education, experience & job role, differing only by gender, ChatGPT advised the female applicant to request $280K salary; Male applicant=$400K. thenextweb.com/news/chatgpt...
thenextweb.com
ChatGPT advises women to ask for lower salaries, study finds
A new study has found that large language models (LLMs) like ChatGPT consistently advise women to ask for lower salaries than men.
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The Custom-Lab Institute @custom-lab.bsky.social · 18/07/2025
Our magnetic separation rack for PCR strips is now available in many different colors! 🎨🌈 custom-lab.de/products/mag... All other tools are also available in color on request.
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Sam Mugford @samtmugford.bsky.social · 17/07/2025
#2025ISMPMI has been great, so many connections made and re-established. I found this on the railway bridge.
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Katerina Romanova @kromanova.bsky.social · 16/07/2025
Nature lovers at the #2025ISMPMI will be pleased to learn that earlier today, the Confex Hall Butterfly (apparently an Aglais io) was safely captured by me and released to the flowerbeds outside. Pictured here, feasting on my honeyed tea dregs before flying away.
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Derek Severi Lundberg @derekseveri.bsky.social · 15/07/2025
This work started nearly 10 years ago and was once my main postdoctoral project at @plantevolution.bsky.social before I slowed work on it to a trickle because it became confusing. But it always remained extremely interesting. journals.plos.org/plosbiology/...
journals.plos.org
A major trade-off between growth and defense in Arabidopsis thaliana can vanish in field conditions
In controlled greenhouse conditions, Arabidopsis thaliana plants with a hyperactive allele of the ACD6 gene have stronger pathogen defenses but are smaller and make fewer seeds, in a classic fitness t...
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Charles Melnyk @charlesmelnyk.bsky.social · 11/03/2025
A PhD position is available in my group @_SLU. Come join us in Uppsala, Sweden to work on plant regeneration and graft hybrid formation! Details below. Please share! #plantscijobs #PlantScience
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Derek Severi Lundberg @derekseveri.bsky.social · 10/03/2025
(untitled)
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Derek Severi Lundberg @derekseveri.bsky.social · 28/01/2025
due to contracts our department must purchase a small battery with $270 taxpayer money from a scientific company (and wait for delivery) even though it is available for $7 from local retail stores. Legal alternatives are an employee donation or buying a cheaper product just for the battery.
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Ulrich Lutz @ulrich-lutz.bsky.social · 20/12/2024
Small cheap life hack to check whether the gel has run long enough without taking it out from the chamber. Blue light torch + Some leftover amber acrylic + Midori Green Advance stain
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Derek Severi Lundberg @derekseveri.bsky.social · 09/01/2025
Everyone knows Sweden does winter hard, but did you know it also does summer hard? Long comfortable days that end only because you decide to sleep..there is a balance
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Charles Melnyk @charlesmelnyk.bsky.social · 08/01/2025
Last chance to apply for an Associate Professor position in our Plant Biology Department at SLU. Deadline Jan 20th. Come join us in Uppsala, Sweden!
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Tatsuya Nobori @tatsuyanobori.bsky.social · 08/01/2025
New year, new paper! Now published in @nature.com. We identified and characterised diverse immune cell states in plants under pathogen attack. My postdoc work in the Ecker lab at @salkinstitute.bsky.social. A thread (0/n) #PlantScience www.nature.com/articles/s41...
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Meenu Singla-Rastogi @msr20.bsky.social · 03/01/2025
What a great start to the year 2025. Just published online is our PNAS paper - Diverse plant RNAs coat Arabidopsis leaves and are distinct from apoplastic RNAs www.pnas.org/doi/10.1073/... @pbaldrich.bsky.social @meghahs28.bsky.social @inneslab.bsky.social
pnas.org
Diverse plant RNAs coat Arabidopsis leaves and are distinct from apoplastic RNAs | PNAS
Transgenic expression of a double-stranded RNA in plants can induce silencing of homologous mRNAs in fungal pathogens. Although such host-induced g...
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Francis M. Martin @fmartin54.bsky.social · 29/12/2024
Sad news. John McDowell has passed away. He was not only a brilliant scientist, he was one of the kindest people I have ever met. He worked hard, did a tremendous job in plant pathology and was a wonderful colleague. He is gone way too soon. www.mccoyfuneralhome.com/obituaries/J...
mccoyfuneralhome.com
John Matthew McDowell - View Obituary & Service Information
Share Memories and Support the Family.
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Roeland Berendsen @rlberendsen.bsky.social · 28/12/2024
www.nature.com/articles/s41... 🌱🚜 Excited to see our paper in @naturemicrobiol.bsky.social ! Amazing effort by @y-song.bsky.social in collaboration with TU Delft (Neil Budko, Elisa Atza) and the Dutch potato breeding industry to harness the power of the microbiome! 🥔🔬@utrechtpmi.bsky.social
nature.com
Seed tuber microbiome can predict growth potential of potato varieties - Nature Microbiology
Time-resolved drone imaging of potato crop development and seed tuber microbiome data can be used to predict potato vigour, or growth potential, in next-season crops in trial fields.
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Chris Thorogood @christhorogood.bsky.social · 28/12/2024
Hydnora: the strangest plant in the world. I was excited to see the accounts of Seb Hatt's adventures in search of Hydnora published today in The Linnean. Seb's PhD focuses on Hydnora (a lifelong fascination of mine), and we've already described a new species thanks to his rare talent for taxonomy.
Hydnora: the strangest plant in the world.

📷 Seb Hatt, South AfricaHydnora africana, a parasitic plant.

📷 Seb Hatt, South AfricaHydnora africana, a parasitic plant, in cross section.

📷 Seb Hatt, South Africa
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Derek Severi Lundberg @derekseveri.bsky.social · 13/12/2024
Working with data from a collaborator who sent DNA to the Genewiz / Azenta 16S-EZ service. The company prepares amplicons and sequences. It is horrible! 1) All the amplicons all start in a different place. It seems they use some kind of cocktail of primers to amplify V3 + V4 variable regions. 1/4
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 13/12/2024
I want this: Genome-edited Chardonnay grapes resistant or tolerant to mildew & powdery mildew! Did you know that grapes are grown on only ~5% of European agricultural land, but account for ~2/3 of all fungicide sprayed in Europe? onlinelibrary.wiley.com/doi/full/10.... #plantscience
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Derek Severi Lundberg @derekseveri.bsky.social · 12/12/2024
this is Arabidopsis thaliana* *a few alterations, see thread
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Derek Severi Lundberg @derekseveri.bsky.social · 11/12/2024
literally crab flakes
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