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Darren Wilkinson

@darrenjw.bsky.social
1.3K followers 867 following 24 posts

Professor of Statistics, Bayesian, computational systems biologist and functional programmer, darrenjw.github.io

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Reposted by Darren Wilkinson
Journal of Open Source Software @joss-openjournals.bsky.social · 05/05/2026
🎉 JOSS turns 10 today! Ten years, 3,500+ papers, 11,000+ authors, 4000+ reviewers, and a community that built something remarkable together. Thank you to everyone who's reviewed, edited, authored, or cheered us on along the way 💚 joss.theoj.org #openscience #opensource
joss.theoj.org
Journal of Open Source Software
Journal of Open Source Software (JOSS) is a developer friendly, open access journal for research software packages.
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Hetan Shah @hetanshah.bsky.social · 01/02/2026
Hot off the press - a letter from the Exec Chair of @ukri.org explaining his plans and in particular the financial position of STFC. It notes curiosity driven research is protected and will make up around half of UKRI spend over the coming period www.ukri.org/news/open-le...
ukri.org
Open letter from Ian Chapman to research and innovation community
UKRI Chief Executive outlines changes to UKRI investment approach, addressing concerns about research funding and the financial position of STFC.
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Sam Duffield @samduffield.com · 30/01/2026
New open source: cuthbert 🐛 State space models with all the hotness: (temporally) parallelisable, JAX, Kalman, SMC
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Bruno Rodrigues @brodriguesco.bsky.social · 01/02/2026
The first data science book that has a chapter on monads reproducible-data-science.dev Learn how to build robust #DataScience pipelines with #RStats, #Python , #Julia and #Nix !
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Ben Longdon @blongdon.bsky.social · 31/01/2026
BBSRC and EPSRC join MRC "pausing" funding grant apps www.timeshighereducation.com/news/three-u...
timeshighereducation.com
Three UK research councils suspend funding opportunities
Temporary block on grant applications by MRC, BBSRC and EPSRC heightens concerns over funding cuts
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Thomas House @tah-sci.com · 04/01/2026
Hivemind question: Palmer Penguins is doing great work avoiding overuse of Fisher's iris data. What other "dataset substitutions" do you like? Or just generally other cool, real, open datasets that are good for teaching because established methods work pretty well on them?
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Alan Pope @popey.me · 01/01/2026
I made a (sort of) "Tinder for Git" site to help developers find 'good first issues' in open-source projects. It's early days, but it could be helpful. gitafix.com/
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Darren Wilkinson @darrenjw.bsky.social · 01/01/2026
Some lecture notes on spatial and temporal modelling, illustrated using R - darrenjw.github.io/spatio-tempo... - #rstats #rspatial #quarto
darrenjw.github.io
Spatial and temporal statistics
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Darren Wilkinson @darrenjw.bsky.social · 05/12/2025
The "netcontrol" #rstats package was recently removed from #cran - I have some instructions for installing the archived version: darrenjw.github.io/work/docs/ne...
darrenjw.github.io
netcontrol for R
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Darren Wilkinson @darrenjw.bsky.social · 27/11/2025
Stochastic Gray Scott diffusion via the spatial chemical Langevin equation.
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Jack Lynch @jacklynch000.bsky.social · 17/08/2025
I'll admit, I was skeptical when they said Gemini was just like a bunch of PhDs. But I gotta admit they nailed it.
Google's Gemini AI tells a Redditor it's 'cautiously optimistic' about fixing a coding bug, fails repeatedly, calls itself an embarrassment to 'all possible and impossible universes' before repeating 'I am a disgrace' 86 times in succession
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Owen Boswarva @owenboswarva.bsky.social · 12/08/2025
Staff fear UK's Turing AI Institute at risk of collapse www.bbc.com/news/article... BBC News has seen the complaint that the Guardian reported on Sunday. Main additional info seems to be that Helen Margetts and Cosmina Dorobantu left positions at the ATI last month. #govtech #techpolicy #AIpolicy
Others who have worked with the Turing Institute told the BBC there are concerns within the wider research community about its direction.

In July, professors Helen Margetts and Cosmina Dorobantu, long-standing co-directors of a successful programme which helped the public sector use AI, quit their positions at the charity.

Former chief technology officer Jonathan Starck left the organisation in May after eight months.

And some of its remaining staff describe a toxic internal culture.
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Darren Wilkinson @darrenjw.bsky.social · 08/08/2025
"ChatGPT will apologize for anything - even advice it definitely didn't give". Is ChatGPT... British?!
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Darren Wilkinson @darrenjw.bsky.social · 07/08/2025
Little summer holiday project: learn enough about fluid dynamics to implement a 2d simulation from scratch: www.youtube.com/watch?v=DYos...
youtube.com
2d incompressible fluid flow
YouTube video by Darren Wilkinson
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Darren Wilkinson @darrenjw.bsky.social · 21/07/2025
New report: britishprogress.org/reports/refo...
britishprogress.org
Reforming the Alan Turing Institute
The UK's national AI institute has lost its way. Major reform is needed to turn it into a vital asset for defence and national security.
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Eugene Vinitsky 🍒 @eugenevinitsky.bsky.social · 19/05/2025
Going to the hospital because I broke my wrist smashing the endorse button: www.understandingai.org/p/i-got-fool...
understandingai.org
I got fooled by AI-for-science hype—here's what it taught me
I used AI in my plasma physics research and it didn’t go the way I expected.
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José A. Alonso @jalonso.eurosky.social · 04/07/2025
Reflections on Haskell and Rust. ~ Sibi Prabakaran. academy.fpblock.com/blog/rust-ha... #Haskell #FunctionalProgramming #Rust
academy.fpblock.com
Reflections on Haskell and Rust
Haskell vs. Rust: A production-level comparison of two languages.
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Darren Wilkinson @darrenjw.bsky.social · 04/07/2025
I was interviewed recently for the Durham maths student podcast, @chalkboardultra.bsky.social, episode 39: open.spotify.com/episode/06jx... - good fun.
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Met Office - weather and climate @metoffice.gov.uk · 04/07/2025
Did you know? 100 years ago today, the BBC broadcast the #ShippingForecast for the very first time, produced by the Met Office for the Maritime and Coastguard Agency. More than just a lifesaver, it’s become a beloved part of Britain’s cultural identity. Learn more: bit.ly/4kg877D 🛳️🌊
Met Office graphic with the heading 'DID YOU KNOW?' and an illustration of a light bulb. Text reads: '100 years ago today, the BBC broadcast the very first Shipping Forecast, produced by the Met Office on behalf of the Maritime and Coastguard Agency.' Includes the hashtag '#WhenItMatters'. On the right, a photo shows rough ocean waves under a cloudy sky.
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AI in the Biosciences (AIBIO UK) BBSRC Network @aibio-uk.bsky.social · 15/04/2025
📢 UKRI is seeking feedback on a new draft research data policy to update expectations for sharing and managing research data. More info and feedback details: engagementhub.ukri.org/ukri-openres... Existing policies remain in effect: www.ukri.org/manage-your-... #ResearchData #UKRI
engagementhub.ukri.org
Developing UKRI's research data policy - UK Research and Innovation - Citizen Space
Find and participate in activities run by UK Research and Innovation
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Desi R Ivanova @desirivanova.bsky.social · 21/02/2025
I’m teaching a grad course for the first time (a bit terrifying 😅) and I’ve decided to write a short blog post after each lecture, that will highlight a key takeaway from it and reflect on what can be improved. First one ⬇️
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Darren Wilkinson @darrenjw.bsky.social · 05/02/2025
#python #jax #sysbio #scicomp #opensource
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Julia Laite @julialaite.bsky.social · 19/12/2024
'I can't make money without breaking the law and therefore you should let me break the law' is one helluva flex. futurism.com/the-byte/ope...
futurism.com
OpenAI Pleads That It Can’t Make Money Without Using Copyrighted Materials for Free
OpenAI is begging Parliament to allow it to use copyrighted works because it's "impossible" for the company to make money without them.
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Darren Wilkinson @darrenjw.bsky.social · 19/12/2024
Published (advance access) in #Bayesian Analysis: Bayesian Inference on the Order of Stationary Vector Autoregressions - doi.org/10.1214/24-B...
doi.org
Bayesian Inference on the Order of Stationary Vector Autoregressions
Vector autoregressions (VARs) are a widely used tool for modelling multivariate time-series. It is common to assume a VAR is stationary; this can be enforced by imposing the stationarity condition whi...
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Salar Rahmanian @salarrahmanian.bsky.social · 12/11/2024
Created a Starter pack for all #Scala programming language enthusiasts, developers and users. Please share. If I missed anyone please let me know so I can add them to the list! I wasn't able to add some people assume that's their #Bluesky settings that prevents me adding them. go.bsky.app/APytbWH
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Mathieu Alain @miniapeur.bsky.social · 29/11/2024
Bayesian statistics and bayesian machine learning starter pack go.bsky.app/HiwtzcZ
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Mark Rubin @markrubin.bsky.social · 29/11/2024
UK Uni Funding Crisis "Among academics, morale is reportedly at an all-time low. The prospect of further job losses follows on from years of falling pay, heavier workloads, often precarious working conditions, and pension reductions – which have led to waves of strikes." #UKHE #AcademicSky
theweek.com
The UK universities in financial crisis
Spiralling costs and fewer international students is leaving universities in serious financial trouble
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Chad Scherrer @cscherrer.bsky.social · 19/11/2024
I got a Probabilistic Programming starter pack going. Hit me up if you're involved with #probprog R&D and want in! go.bsky.app/JfvubEf
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Jessica Elgot @jessicaelgot.bsky.social · 17/11/2024
By popular demand… the Guardian is officially on BlueSky @theguardian.com
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Richard Everitt @bayesianstats.bsky.social · 15/11/2024
I made a starter-pack for Statistics and Statistics-related groups, departments or organisations. Please share, and suggest accounts that I have missed. go.bsky.app/q6MfWL
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Maike Osborne @maosbot.bsky.social · 09/11/2024
New here? Interested in AI/ML? Check out these great starter packs! AI: go.bsky.app/SipA7it RL: go.bsky.app/3WPHcHg Women in AI: go.bsky.app/LaGDpqg NLP: go.bsky.app/SngwGeS AI and news: go.bsky.app/5sFqVNS You can also search all starter packs here: blueskydirectory.com/starter-pack...
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Leo 🏴‍☠️ @leostera.com · 31/10/2024
ok folks let’s build a starter pack for FP — who’s missing here? go.bsky.app/Tkj4hAZ
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Jeremy Allen @jeremy-data.bsky.social · 26/10/2024
My fav starter packs so far, a thread: stats: go.bsky.app/Ki7PjpS stats: go.bsky.app/7TBN5rX causal inference: go.bsky.app/FdemGAZ package devs: go.bsky.app/N1569Qh data peeps: go.bsky.app/8TdEfdK medical stats: go.bsky.app/ArqEz36 bioinformatics: go.bsky.app/Ha64Gmv r-ladies: go.bsky.app/Vgxwa2F
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Michael "Shapes Dude" Betancourt @betanalpha.bsky.social · 14/10/2024
Next month on Wednesday November 6 I will be offering my comprehensive hierarchal modeling course at a steep discount in an effort to raise funds for World Central Kitchen and Doctors Without Borders, particularly their ongoing work in Gaza and Lebanon.
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Thomas Lumley @tslumley.bsky.social · 09/10/2024
I wasn't serious
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Mark Rubin @markrubin.bsky.social · 08/10/2024
Scrap the REF "With pressures on both university and government finances, we can no longer afford an evaluation exercise which costs half a billion and fails to deliver clear benefits." #UKUnis #AcademicSky #HigherEd
researchprofessionalnews.com
Scrap REF to ‘save £450m’, says think tank - Research Professional News
UK Day One suggests “new, low-bureaucracy system” would improve research quality
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Darren Wilkinson @darrenjw.bsky.social · 08/09/2024
jax-smfsb: a JAX port of my code for high-performance stochastic systems biology modelling, simulation and Bayesian inference - on PyPI for pip installation - pypi.org/project/jsmf...
pypi.org
jsmfsb
Python+JAX code relating to the textbook, Stochastic modelling for systems biology, third edition
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Stephen Wild @stephenjwild.bsky.social · 01/09/2024
Created a starter pack of Bayesians. It is *very* biased by who I engage with regularly and who I know is on this site. Let me know if you want to be added to the list or know someone who should be. #stats go.bsky.app/UfgChHe
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samuel mehr @mehr.nz · 30/08/2024
for those looking to replicate that classic science twitter energy 🧪 go.bsky.app/FGTURr3
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Darren Wilkinson @darrenjw.bsky.social · 06/07/2024
Using optimised BLAS and LAPACK libraries with #Scala #Breeze - darrenjw.wordpress.com/2024/07/06/u...
darrenjw.wordpress.com
Using optimised BLAS and LAPACK libraries with Scala Breeze
Breeze is the standard scientific and numerical library for Scala. For linear algebra operations, it builds on top of the Java library, netlib. This provides a nice interface to BLAS and related libra...
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Rami Krispin @ramikrispin.bsky.social · 13/06/2024
(1/4) Causal Inference in R 📚 🚀 If you are doing or want to learn causal inference, I recommend you check Causal Inference in R - a new book by @malcolmbarrett.malco.io, Lucy D’Agostino McGowan, and @travisgerke.bsky.social 🧵👇🏼 #rstats #datascience #machinelearning #stats
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hrbrmstr 🇺🇦 🇬🇱 🇨🇦 🏳️‍🌈 @hrbrmstr.dev · 09/05/2024
rud.is/b/2024/05/03... aitap.github.io/2024/05/02/u... The CVE shld not have been assigned, but the dire weakness in safety in R data files is most certainly not a hoax.
rud.is
CVE-2024-27322 Should Never Have Been Assigned And R Data Files Are Still Super Risky Even In R 4.4.0
I had not planned to blog this (this is an incredibly time-crunched week for me) but CERT/CC and CISA made a big deal out of a
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Darren Wilkinson @darrenjw.bsky.social · 07/04/2024
For those who know my book, Stochastic modelling for systems biology, third edition, but prefer #python to #rstats, there is now a full python/numpy port of the #smfsb R package on PyPI: pypi.org/project/smfsb/
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