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Dan Whiley

@danwhiley.bsky.social
105 followers 112 following 11 posts

Né Daniel Wilkinson. Nottingham. Microbiologist. Microbial Genomics. Bioinformatics. Helicobacter species. Mycobacterium tuberculosis. Biofilms. Postdoc. PubMLST Helicobacter suis database curator. Editor (Mentee) Access Microbiology.

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Reposted by Dan Whiley
Nikoletta Kalenderoglou @nkalender.bsky.social · 03/07/2025
Amazing science at the #SHIMR2025 symposium, from #BrainHealth to #BigData. #NTUMetabolic #SHIMR_NTU @mark-christian-lab.bsky.social @jhobbs22.bsky.social
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NTU Metabolism @ntumeta.bsky.social · 02/07/2025
Kicking off #SHIMR2025 Symposium, with director of #SHIMR_NTU, Professor Nik Morton, delivering the opening remarks, setting the tone for a day full of exciting research. #NTUMetabolic #NTU #NTU_Research
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NTU Metabolism @ntumeta.bsky.social · 02/07/2025
An inspiring afternoon session at #SHIMR2025 Symposium. Chaired by Dr Marion Hogg, the session began with Professor Tom Wishart offering a look into the proteomic profiling of #synapses, exploring how molecular vulnerability might shape #neurological stability. #SHIMR_NTU @ntuneuro.bsky.social
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NTU Metabolism @ntumeta.bsky.social · 02/07/2025
Next, Dr @martineurosci.bsky.social #BBSRC Fellowship Awardee, shared her research journey into #glia-to-#neuron communication in the #brain. #SHIMR_NTU #neuroscience #NTU @ntuneuro.bsky.social
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NTU Metabolism @ntumeta.bsky.social · 02/07/2025
We also heard presentations from three early career researchers: 🦠 Dr @danwhiley.bsky.social on #HelicobacterSuis in pigs and its #zoonotic implications. #SHIMR_NTU #NTU
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aurelianachilengue.bsky.social @aurelianachilengue.bsky.social · 11/06/2025
I am Honoured to have received the 2nd Prize at NTU's ⭐️ STAR (Science & Tech Annual Research) Conference! Special thanks to my supervisors @conmeehan.bsky.social @blackpassiflora.bsky.social and collaborators @danwhiley.bsky.social @Kate Cox for the incredible support. @arom-ntu.bsky.social
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Professor Lesley Hoyles @bugsinyourguts.bsky.social · 22/04/2025
New preprint from @mohamedeladawy.bsky.social This represents the main body of work from Mohamed's thesis. He's carried out the largest study, to date, on G-ve (11 different genera) CAUTI-associated bacteria in Egypt. #UTIsky #Microsky #AMR It's been a pleasure to supervise Mohamed's PhD studies.
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Antimicrobial Resistance, Omics & Microbiota (AROM) @ NTU @arom-ntu.bsky.social · 02/04/2025
Congratulations to Caitlin Wildsmith on the second paper from her PhD with @davidnegus.bsky.social! #microsky
microbiologyresearch.org
Genomic and phenotypic characterization of staphylococci isolated from the skin of non-human primates
The growth of wildlife tourism coupled with continued deforestation has resulted in increased contact between non-human primates (NHPs) and humans. Such events may promote the transmission of potentia...
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Conor (Conchúr) Meehan @conmeehan.bsky.social · 01/04/2025
Super proud of my group presenting both posters and invited talks at @microbiologysociety.org today! Lots of great stuff from @aurelianachilengue.bsky.social @danwhiley.bsky.social and Kate Cox!
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Dan Whiley @danwhiley.bsky.social · 01/04/2025
And last but certainly not least from a busy Tuesday for the @arom-ntu.bsky.social was @dralhubb.bsky.social talking about drivers of acquisition of antimicrobial resistance in urinary tract infections
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Dan Whiley @danwhiley.bsky.social · 01/04/2025
Then we had my talk from the @arom-ntu.bsky.social on Heicobacter suis in UK pigs and retail meat products
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Dan Whiley @danwhiley.bsky.social · 01/04/2025
Next from @arom-ntu.bsky.social and @conmeehan.bsky.social group was Kate Cox presenting her work on “Creating a molecular epidemiology framework for Mycobacterium leprae”
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MicrobesNG @microbesng.bsky.social · 01/04/2025
Great to hear from @danwhiley.bsky.social (Nottingham Trent University) on Helicobacter suis in UK farmed pigs 🐖 and retail meat products 🥓. We are glad this session was after lunch! #MicrobialGenomics #Microbio25 #MicroSky
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MicrobesNG @microbesng.bsky.social · 01/04/2025
Fantastic talk from Kate Cox (Nottingham Trent University) looking at a much needed molecular epidemiology framework for M.leprae #MicrobialGenomics #Microbio25 #MicroSky @conmeehan.bsky.social @blackpassiflora.bsky.social
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Dan Whiley @danwhiley.bsky.social · 01/04/2025
Next from @arom-ntu.bsky.social group is Chantelle Endeley from @blackpassiflora.bsky.social group talking about mechanisms underpinning evolution and adaptation to defects in the cell cycle control regulator, Cdc25 phosphatase in yeast
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Alasdair Hubbard @dralhubb.bsky.social · 01/04/2025
And finally, last talk of the day is ... me! I'll be talking in the "Urogenetial Microbes in Health and Disease" at 17:00 where I will go through our preliminary project looking at where AMR genes/strains/species potentially come from during treatment (5/5) #microbio25. Come see them all!!
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Alasdair Hubbard @dralhubb.bsky.social · 01/04/2025
@danwhiley.bsky.social who will be speaking on Helicobacter suis in UK farmed pigs and retail meat products. Really interesting work! (15:30) (4/5)
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Alasdair Hubbard @dralhubb.bsky.social · 01/04/2025
Then later this afternoon we have a double bill in the "Exploring Hidden Threats" session with Kate Cox (MBiol student with @conmeehan.bsky.social) talking about creating a molecular epi framework for M. Leprae (15:15) followed by.. (3/5)
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Alasdair Hubbard @dralhubb.bsky.social · 01/04/2025
And in a clash, we have @c-cornbill.bsky.social from Warwick (supervisor @friendlymicrobe.bsky.social) talking about the variability in AMR evolution in different host mimicking media in the "AMR - Mechanism and Regulation" (2/5)
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Alasdair Hubbard @dralhubb.bsky.social · 01/04/2025
Today's the day for the majority of the @arom-ntu.bsky.social talks at #Microbio25. First up we have Chantelle Endley who will be talking about cell cycle control regulator cdc25 in yeast in the "Genetics and Genomics" forum (12:30). (1/5)
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Microbiology Society @microbiologysociety.org · 01/04/2025
Peter Wildly Prize Winner, Professor Lindsay Hall hosts their lecture on 'Guardians of the Gut: Bringing Microbiome Science to life through Public Engagement' in Hall 1 at 9:00 BST #Microbio25. Read about the prize winner- microb.io/ProfLindsayH...
microb.io
Meet the 2025 Peter Wildy Prize winner, Professor Lindsay Hall
25 March 2025
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Kasia M Parfitt @kasiamparfitt.bsky.social · 31/03/2025
Make sure to check out the Understudied Bacterial Pathogens session tomorrow. We have a brilliant line up of speakers, including invited talks from Esh Mahenthiralingam and @sylvainbrisse.bsky.social #Microbio25 @microbiologysociety.org @alanmcn1.bsky.social @sheppardlab.bsky.social
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Conor (Conchúr) Meehan @conmeehan.bsky.social · 31/03/2025
A new version of our Mtb pangenome preprint is out! Expanded analysis of the full pangenome data and answering all those questions the reviewers asked for ;). Great working with @mabi-behruznia.bsky.social @danwhiley.bsky.social @blackpassiflora.bsky.social and others www.biorxiv.org/content/10.1...
biorxiv.org
The Mycobacterium tuberculosis complex pangenome is small and shaped by sub-lineage-specific regions of difference
The Mycobacterium tuberculosis complex (MTBC) is a group of bacteria causing tuberculosis (TB) in humans and animals. Understanding MTBC genetic diversity is crucial for insights into its adaptation a...
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Fiona J Whelan @whelanfj.bsky.social · 31/03/2025
So glad to be here at #microbio25 ! Very important opening words: “publishing 1 paper with us allows 4 students to attend this AC for free” #publishforthecommunity
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Microbiology Society @microbiologysociety.org · 31/03/2025
Enjoyed today's Education and Outreach Symposium? Don't forget you can publish pedagogy articles in Access Microbiology, like this one -
doi.org
How to set up and run a Bad Bugs Bookclub group
The Bad Bugs Bookclub is a public engagement initiative that enables scientists (microbiologists) and non-scientists to discuss the role of infectious disease and microorganisms in novels of fiction.…
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Professor Lesley Hoyles @bugsinyourguts.bsky.social · 31/03/2025
Missing #microbio25 (poorly - boo!) but grateful I can present our work as recorded talks. Tues pm - Knocking Out AMR Forum, cool study with @davidnegus.bsky.social on class A beta-lactamases. Wed am - Urogenital Microbes session, reconsidering how we characterise G -ve uropathogens.
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Alan McNally @alanmcn1.bsky.social · 31/03/2025
What a fantastic and highly relevant way to start #Microbio25 with a wonderful presentation by the Black Microbiologists Association as our EDI prize winning lecture.
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Alasdair Hubbard @dralhubb.bsky.social · 31/03/2025
We're here at #MicroSoc25, well some of us at least... come see @mwilde.bsky.social poster (A146) and chat to her about her work on gene silencing! Then tomorrow I'll be speaking at the urogenetial microbes session. #microsky #utisky
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Milli Wilde @mwilde.bsky.social · 31/03/2025
I'm back with a better (and pinker) poster this year, please feel free to come chat!
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Dan Whiley @danwhiley.bsky.social · 31/03/2025
If you are interested in genome masking, epidemiology, Mycobacterium tuberculosis, or want to learn more about what @conmeehan.bsky.social @blackpassiflora.bsky.social @aurelianachilengue.bsky.social and I have been up to please visit my poster at A56 Mon-Tue @microbiologysociety.org
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Dan Whiley @danwhiley.bsky.social · 31/03/2025
First from the @arom-ntu.bsky.social group is @jodywinter.bsky.social who was awarded the 2024 Microbiology in Society Award. Jody is talking about education outreach and research as an invited talk.
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Dan Whiley @danwhiley.bsky.social · 31/03/2025
Looking forward to a few days of conferences talks, posters, and networking at @microbiologysociety.org annual conference. I’m presenting in the “Exploring Hidden Threats” session on Tuesday @ 15:30. I will be talking about the zoonotic pathogen Helicobacter suis. Please come along!
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Conor (Conchúr) Meehan @conmeehan.bsky.social · 31/03/2025
We have arrived at @microbiologysociety.org #microsoc25 See 2 talks from my group at the Exploring Hidden Threats session Tues PM (Kate Cox and @danwhiley.bsky.social and 2 posters Tuesday Block A (A049 @aurelianachilengue.bsky.social and A056 @danwhiley.bsky.social )
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Dan Whiley @danwhiley.bsky.social · 05/03/2025
I’m excited to announce my new position as Editor (Mentee) for #AccessMicrobiology which is part of the @microbiologysociety.org journal portfolio. Happy to receive advice from any current or former Editors to help me succeed in this role.
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Keith Jolley @kjolley.bsky.social · 08/01/2025
BIGSdb v1.50.1 has been released. This adds support for Neighbour-Joining trees in GrapeTree. Full release notes at github.com/kjolley/BIGS...
Neighbour-joining phylogenetic tree with coloured nodes at the ends of branches representing clonal complexes.
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Microbiology Society @microbiologysociety.org · 13/01/2025
Applications to join the #KnockingOutAMR Scientific Advisory Group are now open.
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Nature Microbiology @natmicrobiol.nature.com · 13/01/2025
💊🦠OUT NOW - comprehensive analysis of the propensity of ESKAPE pathogens to evolve resistance to new and in development antibiotics by Csaba Pal, Balint Kintses, Balazs Papp and colleagues. Dive in here... www.nature.com/articles/s41...
nature.com
ESKAPE pathogens rapidly develop resistance against antibiotics in development in vitro - Nature Microbiology
An extensive experimental analysis of resistance to antibiotics in development or introduced post-2017 in ESKAPE bacteria reveals the dynamics of resistance acquisition, mutational targets and the pre...
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Ryan Wick @rrwick.bsky.social · 31/12/2024
New year, new assemblies! I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes! It's the successor to Trycycler, designed to be faster and less reliant on user intervention. Check it out: github.com/rrwick/Autoc... (1/5)
github.com
Home
A tool for generating consensus long-read assemblies for bacterial genomes - rrwick/Autocycler
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Microbiology Society @microbiologysociety.org · 08/01/2025
It’s official: The Microbiology Society is on Bluesky!
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Conor (Conchúr) Meehan @conmeehan.bsky.social · 28/10/2024
Our latest paper on mmpR5 frameshifts mutations is out! Our modelling suggests that this regressor protein can still form its structure using alternative reading frames, which is important when predicting bedaquiline resistance in Mtb. journals.asm.org/doi/full/10....
journals.asm.org
Frameshift mutations in the mmpR5 gene can have a bedaquiline-susceptible phenotype by retaining a protein structure and function similar to wild-type Mycobacterium tuberculosis | Antimicrobial Agents...
Tuberculosis (TB), caused by Mycobacterium tuberculosis, remains the deadliest infectious disease and is particularly challenging to treat when it becomes drug-resistant. Bedaquiline (BDQ) is a recent...
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Alasdair Hubbard @dralhubb.bsky.social · 21/10/2024
Can chlormaphenicol be reintroduced in to Malawi for treatment of sepsis? We looked into the mechanisms behind the rise in chlormaphenicol susceptibility after being removed from use, and found it was potentially mediated by insertion sequences. #microsky #AMR www.nature.com/articles/s41...
nature.com
Molecular mechanisms of re-emerging chloramphenicol susceptibility in extended-spectrum beta-lactamase-producing Enterobacterales - Nature Communications
In this work, authors probe the molecular mechanism of re-emerging CHL susceptibility in Malawian Enterobacterales isolates, where they identify a stable truncation of resistance genes by insertion se...
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Maria Rosa Domingo Sananes @blackpassiflora.bsky.social · 22/10/2024
Join us at the Microbiology Society Annual Conference in Liverpool next year! We have organised a session on sex, HGT and symbiosis across eukaryote microbes to explore genetic recombination in these organisms. #MicroSky #ProtistsOnSky microbiologysociety.org/event/annual...
microbiologysociety.org
Annual Conference 2025
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Gareth McVicker @mcvickermicro.bsky.social · 25/07/2024
Second preprint of the week from our group! This time characterising a plasmid-borne Klebsiella HipBA system in association with @bugsinyourguts.bsky.social and our superb @arom-ntu.bsky.social students: www.biorxiv.org/content/10.1...
biorxiv.org
The plasmid-borne hipBA operon of Klebsiella michiganensis encodes a potent plasmid stabilization system
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
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Alasdair Hubbard @dralhubb.bsky.social · 25/07/2024
Today we're running the 1st in person event for the East Midlands AMR Network. This is event is ECR-led and organised by @danwhiley.bsky.social, @bethjames.bsky.social, @mwilde.bsky.social and Hawa Ahmed. Looking forward to an afternoon of excellent talks on AMR research in East Mids #MicroSky
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Keith Jolley @kjolley.bsky.social · 27/06/2024
BIGSdb v1.47.0 has been released and is now live on @PubMLST. This introduces an embargo system for isolate submissions. If enabled, submitters will now see an option to request an embargo when they submit isolates.
BIGSdb isolate submission page showing new form for requesting an embargo.
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Dan Whiley @danwhiley.bsky.social · 24/06/2024
If you are at #ESM24 and want to know what we (@conmeehan.bsky.social @blackpassiflora.bsky.social @arom-ntu.bsky.social) have been up to regarding lineage-specific genome masking then please visit me at P017.
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Antimicrobial Resistance, Omics & Microbiota (AROM) @ NTU @arom-ntu.bsky.social · 25/04/2024
AROM OUT IN FORCE AT #MICROBIO24! www.arom-ntu.net/news_arom/ar... Thanks to @conmeehan.bsky.social for putting together this blog post on AROM's recent trip to the Microbiology Society Annual Conference 2024.
Some of our staff and students in front of their posters at Microbio24.
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Dan Whiley @danwhiley.bsky.social · 12/04/2024
🚨10 days left to apply for the 10-week paid Summer School aimed at 2nd yr undergrad students from underrepresented backgrounds. I have a project on offer within the @arom-ntu.bsky.social group. Check it out and share with anyone you think might be interested. www.nottingham.ac.uk/bbdtp/magnif...
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Dan Whiley @danwhiley.bsky.social · 10/04/2024
My poster is up at the Microbiology Society conference. Please come and check it out #56 between now and 7:15 pm. The work is on prophage in S. uberis and AMR. Work completed during my time as a post doc at UoN Vet School.
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Adam Blanchard @addyblanch.bsky.social · 21/03/2024
New paper from the lab group and first from @danwhiley.bsky.social during his postdoc with us! with plenty of support from @kjolley.bsky.social Well done Dan for getting this across the line.
microbiologyresearch.org
A core genome multi-locus sequence typing scheme for Streptococcus uberis: an evolution in typing a genetically diverse pathogen
Streptococcus uberis is a globally endemic and poorly controlled cause of bovine mastitis impacting the sustainability of the modern dairy industry. A core genome was derived from 579 newly sequenced ...
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