Sign in

Bram Verhagen

@bramverhagen.bsky.social
104 followers 162 following 19 posts

Postdoc in Krebs group @embl.org Heidelberg Previously, PhD in the Tanenbaum group @hubrechtinstitute.bsky.social

PostsRepliesMedia
Reposted by Bram Verhagen
Arnaud Krebs @arnaudkr.bsky.social · 21/09/2026
We are recruiting! Wet&Dry either combined or separate. If you are excited about gene regulation, new methods in genomics and AI-based interpretation! Talk to us!
0126
Reposted by Bram Verhagen
Arnaud Krebs @arnaudkr.bsky.social · 07/09/2026
Is activation of multiple enhancers and promoters coordinated? Short answer is yes. Check full story from @mathias-boulanger.bsky.social @kasitc.bsky.social leveraging long read single molecule sequencing to address this. @embl.org www.cell.com/molecular-ce...
15014
Reposted by Bram Verhagen
FragileNucleosome @fnucleosome.bsky.social · 03/09/2026
🎤 #FragileNucleosome is back next Wednesday! Hope you enjoyed the summer!Join us next 📅Wednesday to hear about 🧬fascinating research from @mpalamin.bsky.social from Krebs lab and @robertovn.bsky.social from Vos lab. To register if you haven't before: us06web.zoom.us/webinar/regi...
02715
Reposted by Bram Verhagen
Arnaud Krebs @arnaudkr.bsky.social · 12/08/2026
How many TFs to you need to open chromatin at enhancers? Very excited to see this one out! Check out the augmented version with combinatorial motif mutant libraries in Figure 5! Very proud of @guidobarzaghi.bsky.social @valentinabaderna.bsky.social @embl.org
17626
Reposted by Bram Verhagen
FragileNucleosome @fnucleosome.bsky.social · 14/06/2026
🧬This Wednesday will be the final seminar of the Spring 2026 #FNucleosome schedule, and we've got a great one lined up! Join us to hear about the outstanding research of @annanordin.bsky.social, @valentinabaderna.bsky.social, and @kezlane.bsky.social! register here: us06web.zoom.us/webinar/regi...
0166
Bram Verhagen @bramverhagen.bsky.social · 13/05/2026
Happy to share our preprint! Using massively parallel reporter assays, single-molecule imaging, deep learning and cryo-EM, we decode the sequence requirements for translation initiation and describe the “extended translation initiation sequence” (eTIS) that modulates start codon recognition. 🧵👇
12813
Reposted by Bram Verhagen
Francesca Mattiroli @fmattiroli.bsky.social · 30/04/2026
We are looking for a PhD student to study chromatin changes related to heart regeneration, in collaboration with @bakkerslab.bsky.social . Please share and apply! www.hubrecht.eu/nl/vacature/...
hubrecht.eu
PhD student - 38 hours p/w - Hubrecht Institute
We are looking for PhD student in the group of Dr. Francesca Mattiroli at the Hubrecht Institute. The successful candidate will work in a collaborative project between the Mattiroli lab and the lab of...
059
Reposted by Bram Verhagen
Michela Palamin @mpalamin.bsky.social · 24/03/2026
ChromSMF preprint is out!🚀 tinyurl.com/ChromSMF We often piece together chromatin regulation layer by layer from separate assays. But this can be limiting! In @arnaudkr.bsky.social's lab, we developed a method to directly study multiple layers on the same DNA molecule! 🧬 What does this unlock? ⬇️
311551
Reposted by Bram Verhagen
Sora Yang @sorayang.bsky.social · 15/03/2026
My new lab at IGH (Montpellier) is recruiting a postdoc. We develop single-molecule imaging approaches to study RNA–protein dynamics in living cells. Full details & application: euraxess.ec.europa.eu/jobs/417402 Please feel free to share. #biophysics #RNA #microscopy #postdoc
022
Reposted by Bram Verhagen
Marvin Tanenbaum @marvintanenbaum.bsky.social · 12/02/2026
Out now in Cell Systems: We develop a technique to visualize influenza A virus in live cells with single viral RNA resolution. Combined with precise readouts of viral transcription, we map the whole influenza A viral life cycle and identify key bottlenecks in infection. www.cell.com/cell-systems...
cell.com
Live-cell single-vRNP imaging identifies viral gene expression signatures that shape influenza infection heterogeneity
In this study, an imaging technology, “VISUN,” is developed that allows live-cell visualization of unmodified influenza virus during infection with single-vRNP resolution. Combining VISUN with multipl...
14610
Reposted by Bram Verhagen
Micha Müller @michamuller.bsky.social · 12/02/2026
Our paper on visualising influenza A virus in live cells with single viral RNA resolution is now out in Cell Systems 🥳 For more details about what we did, see the thread about the preprint below ⬇️
1182
Reposted by Bram Verhagen
Ulrich Hohmann @hohmannulrich.bsky.social · 19/11/2025
Finally out in @nature.com! We uncovered a mechanistic framework for a general and conserved mRNA nuclear export pathway. www.nature.com/articles/s41.... 1/
311344
Reposted by Bram Verhagen
puckknipscheer.bsky.social @puckknipscheer.bsky.social · 19/09/2025
Are you interested in working on related projects? 🌱 The Knipscheer lab at the Hubrecht Institute (Utrecht, the Netherlands) has openings for a postdoc and a PhD position. Apply here: www.hubrecht.eu/jobs
hubrecht.eu
11410
Reposted by Bram Verhagen
Laura Lorenzo Orts @lorenzoorts.bsky.social · 15/09/2025
I am excited to announce that I will be moving to IMB Mainz next year! The Winter call for the IPP PhD program is now open; if you are interested in maternal #mRNA regulation and #translation in early vertebrate development, please apply! Deadline: 16 October. More info: www.imb.de/students-pos...
imb.de
Laura Lorenzo Orts
IMB Mainz
36825
Reposted by Bram Verhagen
Ina Sonnen @sonnenlab.bsky.social · 10/07/2025
Please pread the word. We have just launched the Hubrecht International PhD Program (HIPP). Are you looking for a PhD position in molecular and developmental biology or related subject in an international, very supportive and collaborative environment? Then apply to the HIPP!! 👇
02317
Reposted by Bram Verhagen
Jeroen van den Berg @jervdberg.bsky.social · 16/05/2025
🧬Postdoc position alert! 🚨 We're hiring a postoc in Computational Modeling of Epigenetic Inheritance at the Hubrecht Institute (Alexander van Oudenaarden, Utrecht 🇳🇱) & Danish Cancer Institute (Anja Groth, Copenhagen 🇩🇰). Come work in our collaberative team of top scientists shorturl.at/avBBy
shorturl.at
Postdoctoral Researcher - Computational modeling of Epigenetic Inheritance - 38 hours p/w - Hubrecht Institute
About the Project Faithful inheritance of the epigenome in proliferating cells critically underpins human development and health. While DNA replication fidelity and DNA mutation rates are well underst...
1911
Reposted by Bram Verhagen
Sebastiaan van Heesch @sebastiaanvheesch.bsky.social · 16/05/2025
### PhD position alert ### Please repost! I'm excited to announce a new *PhD position* within our group. We are looking for a super-motivated candidate with a solid basis in wet- and dry-lab research. Apply now & make sure to include all docs! werkenbijprinsesmaximacentrum.nl/en/vacancy/p...
werkenbijprinsesmaximacentrum.nl
PhD Position: Unraveling the Dark Proteome in Pediatric Cancer - Werken bij Prinses Maxima Centrum
Background For decades, vast stretches of the genome were dismissed as non-functional ‘junk’. However, our group and others have revealed that these regions harbor numerous non-canonical open reading ...
0109
Reposted by Bram Verhagen
Hubrecht Institute @hubrechtinstitute.bsky.social · 12/05/2025
Congratulations to @bramverhagen.bsky.social who successfully defended his PhD on May 8th! He developed a new tool, called RiboScan, which helped him discover new sequences in the mRNA that contribute to finding the start site of the coding sequence. See: www.hubrecht.eu/phd-bram-verhagen
071
Reposted by Bram Verhagen
Francesca Mattiroli @fmattiroli.bsky.social · 04/05/2025
Want to learn more about chromatin and its dynamics? Read this review by Charlotte and Jolijn in our lab, aimed at giving an overview on this and the ways this is dealt with during transcription, replication and damage repair. Thanks to Biochemistry for inviting us! doi.org/10.1021/acs....
doi.org
Always on the Move: Overview on Chromatin Dynamics within Nuclear Processes
Our genome is organized into chromatin, a dynamic and modular structure made of nucleosomes. Chromatin organization controls access to the DNA sequence, playing a fundamental role in cell identity and...
210732
Reposted by Bram Verhagen
Marvin Tanenbaum @marvintanenbaum.bsky.social · 28/03/2025
Very excited to share a new paper from the lab! We visualize RSV infection with single-vRNP resolution and show how the virus coordinates transcription and replication with the formation of viral factories, biomolecular condensates that act as sites of viral genome control. doi.org/10.1101/2025...
doi.org
Pre-assembly of biomolecular condensate seeds drives RSV replication
During infection many RNA viruses, including respiratory syncytial virus (RSV), form specialized biomolecular condensates, inclusion bodies (IBs), where viral transcription and replication occur[1][1]...
42910
Reposted by Bram Verhagen
Hubrecht Institute @hubrechtinstitute.bsky.social · 24/03/2025
We challenged our researchers to describe their work in 10 words or less. See how they did in this video!
49920