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Arturo Carabias

@arturocdr.bsky.social
40 followers 34 following 30 posts
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Pablo Alcón @palconh.bsky.social · 21/08/2026
The summer is (almost) over and, as promised, a postdoc position to join our lab is now officially open! Please apply on our website via the link below, or share with your fellow biochemists / structural biologists / DNA repair aficionados! (deadline 30 September) mbg.au.dk/en/news-and-...
mbg.au.dk
Position as postdoc in biochemistry and structural biology of DNA repair - Vacancy at Aarhus University
Vacancy at Department of Molecular Biology and Genetics - Protein Science, Aarhus University
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Arturo Carabias @arturocdr.bsky.social · 14h
Congrats to K. Zhang, M. Rojas-Montero, D. Poola & A. González-Delgado and the rest of the co-authors from the @seth-shipman.bsky.social, @rafomics.bsky.social ics.bsky.social & @guillermo-montoya.bsky.social labs.
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Arturo Carabias @arturocdr.bsky.social · 14h
Happy to be part of this and to see it out in its final form! 🎉 Don't miss the paper on a fascinating and unexpected biological mechanism!! 👀🔎
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Rafael Pinilla-Redondo (Rafa) @rafomics.bsky.social · 14h
Retron biology keeps surprising us. Type VI does things VERY differently! 🧬 Check the paper to see how it works👇 Fun working with the @seth-shipman.bsky.social lab on this story!
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Rafael Pinilla-Redondo (Rafa) @rafomics.bsky.social · 14h
Huge congrats to K. Zhang M. Rojas-Montero & D. Poola for leading this! Thanks @seth-shipman.bsky.social for bringing us in w/ G. Montoya & @arturocdr.bsky.social 🙌 Really proud of @pentamorfico.bsky.social, D. Zhang, J. Klas & R. Zhao for the fantastic detective work in our lab! 🎉t
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Molecular Cell @cp-molcell.bsky.social · 13/10/2026
Online Now: Reverse transcribed ssDNA derepresses translation of a retron antiviral protein Online now:
dlvr.it
Reverse transcribed ssDNA derepresses translation of a retron antiviral protein
Retrons help bacteria defend against phage by initiating a toxic response to restrict viral propagation. Here, Zhang et al. describe the non-canonical mechanism of Retron-Vpa2, which accumulates msDNA in response to phage triggers and regulates its toxic response on a translational level through a highly structured hybrid RNA.
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Reposted by Arturo Carabias
Rafael Pinilla-Redondo (Rafa) @rafomics.bsky.social · 13/10/2026
Amazing to see the unstoppable @pentamorfico.bsky.social & Dennis Zhang duo shape this story alongside @sternberglab.bsky.social + Israel Fernandez teams. Result: unexpected mechanistic + ancient evolutionary links between bacterial DRTs and telomerase! 🎉
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Rafael Pinilla-Redondo (Rafa) @rafomics.bsky.social · 13/10/2026
We had dismissed TERT’s puzzling placement in bacterial RT trees as an artifact… Then a chance encounter between @pentamorfico.bsky.social and @sternberglab.bsky.social (working on DRT10’s mechanism @stephentang23.bsky.social) provided some clues! 🔍🧬
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Sternberg Lab @sternberglab.bsky.social · 13/10/2026
1/5 Telomerase has long been linked to chromosome maintenance in eukaryotes. Now, we show that telomerase-like activity is also present in bacteria, shedding new light on its ancient origins. Excited to share that our work on DRT10 is now out in @nature.com! www.nature.com/articles/s41...
nature.com
Antiviral immunity via telomerase-like reverse transcription in bacteria - Nature
Nature - Antiviral immunity via telomerase-like reverse transcription in bacteria
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Przemek Dutka @przemekdut.bsky.social · 08/10/2026
Our latest development is now on bioRxiv: cryoSHIELDs — amphipathic peptide additives that make cryo-EM grid prep far more reliable. Tested across 24 protein systems, they enabled the first ABCC6 structure and GPCR–G protein structures at just 0.1–0.5 mg/mL! www.biorxiv.org/content/10.6...
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Andrew Santiago-Frangos @asantiagofrangos.bsky.social · 01/10/2026
Our lab's first preprint! The antiphage protein Tiamat is an ATPase and DNase with homologs across the tree of life. What started as undergrad Shirley Yuan's summer project grew into a paper and a collaboration with @jpkbravo.bsky.social's group. Link: www.biorxiv.org/content/10.6...
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EMBL @embl.org · 14/10/2025
EMBL’s 2025 Kendrew alumni award recipient may know how to make fairy tales come true. Irma Querques (@irmaquerques.bsky.social) repurposed the ‘Sleeping Beauty’ transposon as a genetic tool for new therapeutics, particularly against cancer. www.embl.org/news/people-...
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EMBL Events @events.embl.org · 10/11/2025
What an incredible time at #EMBOMobileGenome last week! 🧬 A huge thank you to everyone who made it such a success – our speakers for their inspiring talks and thought-provoking discussions, our participants for their enthusiasm and engagement, and our team for their hard work behind the scenes 🙏🏼
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Sternberg Lab @sternberglab.bsky.social · 14/11/2025
1/9 Metagenomics lets us read microbiomes in nature without cultivation, but writing (editing) them in their native context is still a major challenge. Meet MetaEdit: a platform for pathway-scale metagenomic editing inside the gut microbiome. science.org/doi/10.1126/...
science.org
Metagenomic editing of commensal bacteria in vivo using CRISPR-associated transposases
Although metagenomic sequencing has revealed a rich microbial biodiversity in the mammalian gut, methods to genetically alter specific species in the microbiome are highly limited. Here, we introduce ...
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Max Perutz Labs Vienna @maxperutzlabs.ac.at · 24/08/2026
Paper alert! 📢 The @irmaquerques.bsky.social lab, with Mateusz Walter as co-first author, reveals in @natcomms.nature.com the molecular checkpoints that control how and when CRISPR-associated transposons move DNA ➡️ tinyurl.com/4mzkhwz6 @univie.ac.at @meduniwien.ac.at
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Sternberg Lab @sternberglab.bsky.social · 28/09/2026
1/13 — New pre-print from the Sternberg Lab in collaboration with Leifu Chang's Lab! TnpB nucleases have repeatedly given rise to TldRs, nuclease-dead RNA-guided transcription factors. Here we define the biological role of one TldR clade in its native host. Story: www.biorxiv.org/content/10.6...
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Alexander Harms @aharms485.bsky.social · 25/09/2026
The final version of our manuscript on TnSeq in bacteriophages (“HIDEN-SEQ”) is out today – if you have an interesting phage phenotype and want to know the underlying genetic basis, this one is for you! 1/4
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Craig Kaplan @triggerloop.bsky.social · 25/09/2026
Cryo-EM peeps are living the dream www.science.org/doi/10.1126/...
science.org
In-cell structures visualize human pre-ribosome assembly in the nucleolus
In eukaryotes, ribosome biogenesis initiates within the nucleolus, a hallmark multilayered compartment of the nucleus. Structures of pre-ribosomes have been characterized ex situ, but their assembly p...
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Arc Institute @arcinstitute.org · 23/09/2026
Many important bacterial non-coding RNAs and structural elements remain undiscovered. To help, David Li, Garyk Brixi, Michael Fischbach, @brianhie.bsky.social & team introduce Minerva, which uses a genome language model to predict RNA base pairing, repeats, & other interactions from sequence alone.
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Anthropic @anthropic.extwitter.link · 23/09/2026
Claude has discovered a previously unknown enzyme system hidden in the DNA of bacteriophages. Beside the enzyme’s gene sits a long array of repeating DNA—a structure that looks somewhat similar to CRISPR. We don’t yet understand what this system does, but only a handful of known systems share it...
anthropic.com
Claude discovers a novel enzyme system with CRISPR-like repeats
Anthropic is an AI safety and research company that's working to build reliable, interpretable, and steerable AI systems.
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Cathy Spangler @cathyspangler.bsky.social · 22/09/2026
I'm excited to share our new preprint, where we show that fine-tuning gold nanoparticle conjugation to different Fab structural elements can produce powerful, rigidly coupled, labeling tools for in-situ cryo-ET. Take a look if you want to see an AuNP in an EM map!🔬🧠 www.biorxiv.org/content/10.6...
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Martin Pacesa @martinpacesa.bsky.social · 21/09/2026
ʙɪɴᴅᴄʀᴀꜰᴛ2 is out, and we're not waiting for the paper. The full code drops today, free for academic and industry use. We're releasing it early so you can start designing right now, and bring its full power to the current Adaptyv competition. github.com/PacesaLab/Bi...
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David Bikard @dbikard.bsky.social · 21/09/2026
New paper from the lab, out in Nature Microbiology. We ran CRISPRi screens to ask what genes E. coli needs in order to live in a gut and what this can tell us about the gut environment itself. doi.org/10.1038/s41564-026-02471-8
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Malcolm White @mfwhite2.bsky.social · 21/09/2026
New preprint from PhD student Yu Sun. TSR1 is a TIR effector specialised for CRISPR defence. It is an obligate dimer activated by cA3 and degrades its own activator using a ring nuclease domain. Perhaps the first confirmed dimeric TIR effector? www.biorxiv.org/content/10.6...
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paveltomancak.bsky.social @paveltomancak.bsky.social · 20/09/2026
21627 applications. Nothing to celebrate here. Impossible to evaluate fairly & safely. Neither the science (too diverse & possibly LLM generated) nor the soft criteria (likely LLM generated). Without an interview stage - a security risk! marie-sklodowska-curie-actions.ec.europa.eu/whats-new/ne...
marie-sklodowska-curie-actions.ec.europa.eu
MSCA Postdoctoral Fellowships 2026 receives record number of applications
The 2026 call has attracted considerable interest from the research community with 21,627 applications submitted.
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EMBL @embl.org · 09/09/2026
Congratulations, Julia Mahamid! The EMBL scientist has been elected to Leopoldina, the German National Academy of Sciences, in recognition of her outstanding contributions to the field of structural cell biology. Learn more: www.embl.org/news/awards-...
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François Rousset @francoisrousset.bsky.social · 08/09/2026
🚨 We are excited to share the first preprint of our lab ! We discovered an NADase enzymatic domain in bacterial immunity and in the human protein TEP1. www.biorxiv.org/content/10.6...
biorxiv.org
A widespread NADase domain links bacterial immunity with human TEP1
Recent discoveries on bacterial immunity have revealed that several protein domains involved in anti-phage defense are conserved in eukaryotes, such as SIRim, TIR, PNP and gasdermin. Bacterial immune ...
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Jack Bravo @jpkbravo.bsky.social · 03/09/2026
…and in other great news, our lab has also been awarded an ERC Starting Grant! 🥳 Very excited for what’s ahead and incredibly grateful to my team, collaborators, and everyone who has supported us along the way.
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Arturo Carabias @arturocdr.bsky.social · 04/09/2026
Congrats Leonie!! Great opportunity to do a PhD - don't miss it!
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Leonie Anton @leonieanton.bsky.social · 03/09/2026
I am excited to share that I will start my group @embl.org in Grenoble in February 2027, where we will investigate host-pathogen interactions using in situ cryo electron microscopy🦠❄️🔬! I am recruiting PhD students through the current open call of the EMBL PhD Program: www.embl.org/about/info/e...
embl.org
Anton Group – Cellular structural biology of host-pathogen interactions
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Irma Querques @irmaquerques.bsky.social · 25/08/2026
🎉 Our first paper from the Querques lab is out! We uncover the molecular checkpoints controlling cut-and-paste transposition by CRISPR-associated transposons. Congrats to Mateusz & the whole team! 🧬 www.nature.com/articles/s41... @univie.ac.at @meduniwien.ac.at
nature.com
Transposon end recognition and excision mechanisms of type I-F CRISPR-associated transposases - Nature Communications
CRISPR-associated transposons mediate RNA-guided DNA integration, but the molecular basis of transposase function remains poorly understood. Here, the authors uncover the mechanism of a highly active ...
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Yuping Li @yuping-li.bsky.social · 03/09/2026
We are thrilled and grateful that our project is funded by #ERCStG via @erc.europa.eu . This will allow us to uncover how the widespread jumbophage killer sensor recognizes the invasion of phiKZ-like jumbophages, which form fascinating vesicle & nucleus compartments during infection.
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Inga Songailiene @ingasongailiene.bsky.social · 03/09/2026
Great news, congrats! 👍🥳
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Rafael Pinilla-Redondo (Rafa) @rafomics.bsky.social · 03/09/2026
We got an ERC StG! 🥳🎉 Huge thank you to all the people who helped us get here. Five years to explore some Qs we’re very excited about! 🧬🔬
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Inga Songailiene @ingasongailiene.bsky.social · 03/09/2026
Happy to share our review article on CRISPR-Cas spacer aquistion "Building CRISPR immunity: evolution and mechanisms of spacer acquisition". 🎏 It was a great pleasure to contribute to it! www.sciencedirect.com/science/arti...
sciencedirect.com
Building CRISPR immunity: evolution and mechanisms of spacer acquisition
CRISPR–Cas systems in prokaryotes serve as adaptive immune systems that neutralize phage infections through RNA-guided nucleases. Immunization is achi…
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Kotaro Chihara @kochihara.bsky.social · 20/04/2026
Happy to share our new work on how phages escape bacterial immunity. We show that a phage homing endonuclease drives segmental amplification of anti-defense genes, pointing to a versatile and rapid mode of adaptation. www.nature.com/articles/s41... #PhageSky #MicroSky
nature.com
Phage homing endonuclease amplifies anti-defense genes to evade bacterial immunity - Nature Communications
Phages employ diverse counter-defense strategies to overcome bacterial immune systems. Here, the authors reveal that the phage homing nuclease SegB facilitates immune evasion by promoting the segmenta...
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Sternberg Lab @sternberglab.bsky.social · 03/08/2026
Out now! In collaboration with Hiroshi Nishimasu's lab, we uncover how a dual reverse transcriptase immune system builds double-stranded DNA from both RNA and protein templates. www.cell.com/cell/abstrac... Previous thread for the preprint: bsky.app/profile/ster...
cell.com
Coordinated RNA- and protein-templated synthesis of double-stranded DNA by a dual reverse transcriptase immune system
Bacterial reverse transcriptases defend against viruses, yet how their DNA products stop infection remains unknown. Bacteriophage inhibition of a host recombination enzyme activates the DRT3 defense s...
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Sofia Luengo-Woods @sluengo.bsky.social · 30/07/2026
We’re so excited to share our new paper, where we tackle the wealth of structural and functional diversity of anti-phage sensors across bacteria (1/6)
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Evgenii Protasov @evgenii-protasov.bsky.social · 30/07/2026
In situ #CryoEM structures of rice photosystem supercomplexes #photosynthesis #plants #StructuralBiology @nature.com www.nature.com/articles/s41...
nature.com
In situ structures of plant photosystem supercomplexes - Nature
The cryo‑EM structure of the Oryza sativa photosystem II–light harvesting complex II supercomplex in its native membrane reveals the intact plant photosystem architecture, retaining physiologically re...
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Pereda Lab @peredalab.bsky.social · 28/07/2026
Happy to share our latest paper! www.science.org/doi/10.1126/... We visualized by cryo-EM how a disease-causing anti-HPA-1a antibody binds to integrin αIIbβ3 and locks it in an inactive state Great colab with Coert Margadant’s lab & groups at Osaka Univ, Sanquin, CNB-CSIC, ISBG Details below… 1/9
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Pereda Lab @peredalab.bsky.social · 28/07/2026
📢Grateful to institutions that made this work possible: ➡️Landsteiner Foundation for Blood Transfusion Research ➡️MICIUN AEI and ERDF @ageinves.bsky.social ➡️Instruct-ERIC @instruct-eric.bsky.social for access to cryo-EM & imaging analysis @cryoemcnbcsic.bsky.social @instructi2pc.bsky.social (9/9)
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Pereda Lab @peredalab.bsky.social · 28/07/2026
In this manner, the Fab not only creates steric hindrance during extension, but it likely prevents the initial movements, acting as a lock!. Hence, we named it the “His-Tyr lock” 🔒 (7/9)
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Pereda Lab @peredalab.bsky.social · 28/07/2026
One key contact occurs between H117-Y118 of the antibody heavy chain contact the disulfide bridge C473-C503 of the I-EGF2. This disulfide is the pivoting point between the I-EGF1 and I-EGF2 during αIIbβ3 extension and activation… (6/9)
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Pereda Lab @peredalab.bsky.social · 28/07/2026
Fab 26.4 contacts not only the PSI domain, but also the I-EGF1 and I-EGF2 domains. The interactions with the I-EGF1/2 domains are key to understand how Ab 26.4 prevents integrin activation … (4/9)
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Pereda Lab @peredalab.bsky.social · 28/07/2026
To answer this question, we solved the cryo-EM structure of the Fab fragment of 26.4 bound to αIIbβ3. We found integrin aIIbb3 in the complex is in a bent-closed (i.e. inactive) state. How does the antibody stabilized this inactive conformation? … (3/9)
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Pereda Lab @peredalab.bsky.social · 28/07/2026
Maternal anti-HPA1a antibodies recognize Leu33 in the PSI domain of β3, causing fetal/neonatal alloimmune thrombocytopenia (FNAIT) One such antibody, named 26.4, blocks αIIbβ3 from binding fibrinogen after thrombin stimulation; a key step in clot formation. How does 26.4 bind the integrin?… (2/9)
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Arturo Carabias @arturocdr.bsky.social · 28/07/2026
Great work by @peredalab.bsky.social and collaborators!! Amazing (and first of many) CryoEM structure😍!
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Basil Greber @bjgreber.bsky.social · 24/07/2026
Happy that our most recent paper on nucleotide excision repair mechanisms has now been published in Science Advances. This project was led by @natalia-mg.bsky.social and @callumhaste.bsky.social and focused on visualising early steps of the NER process by #cryoEM. www.science.org/doi/10.1126/...
science.org
Visualization of stepwise derepression of TFIIH in global genome nucleotide excision repair
Cryogenic electron microscopy captures nucleotide excision repair complexes assembling on damaged DNA templates.
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cryoEM papers @cryoempapers.bsky.social · 18/07/2026
High-resolution cryo-EM structure of integrin αIIbβ3 bound to disease-causing maternal HPA-1a antibody that blocks integrin activation pubmed.ncbi.nlm.nih.gov/42467762/ #cryoEM
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Luuk Loeff @lloeff.bsky.social · 14/05/2026
Happy to share our latest pre-print on the Druantia defense system. We find that Type III Druantia uses a cooperative helicase-nuclease mechanism to sense and degrade replication-associated forked DNA structures. www.biorxiv.org/content/10.6... A🧵
biorxiv.org
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