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Andrej Bicanski

@andrejbicanski.bsky.social
229 followers 243 following 52 posts

Research group leader at MPI_CBS. Physicist turned neuroscientist (interests: too many, but mainly spatial cognition), sporadically on X/BSky.

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Reposted by Andrej Bicanski
(((Dr Hannah Wirtshafter))) 🔬 @aheadofthenerve.bsky.social · 15/09/2026
Hi friends & colleagues! I’m on the hunt for a tenure-track home! I’m a BRAIN Initiative K99/R00 scholar studying learning & memory at the intersection of experimental neuroscience, theory, & machine learning/AI. I’d love to connect & would appreciate help spreading the word! web.mit.edu/hsw/www/
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Nicole Rust @nicolecrust.bsky.social · 05/10/2026
For those not aware of the therapeutic angle: www.nature.com/articles/s41...
nature.com
Partial recovery of visual function in a blind patient after optogenetic therapy - Nature Medicine
Combined intraocular injection of an adeno-associated viral vector, encoding an optogenetic sensor, with light stimulation via engineered goggles enables partial recovery of visual function in a blind...
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Andrej Bicanski @andrejbicanski.bsky.social · 22/09/2026
Now accepted and published --- with many thanks to the referees for helping sharpen the manuscript. Long time since the first notes. Good to see it officially out. www.cell.com/current-biol...
cell.com
A vector navigation and inference architecture can construct universal cognitive maps for abstract reasoning
Bicanski proposes an algorithm and neural mechanisms for the iterative construction of abstract cognitive maps via non-local inference. Map positions are triangulated and memorized by a set of extant ...
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Soledad Gonzalo Cogno @soledad-gcogno.bsky.social · 18/09/2026
📣 🔥 🤩 Our lab is recruiting a PhD student! If you want to do a PhD in computational neuroscience come and join us at the @kavlintnu.bsky.social ! 🧠 💻 For questions and info, the lab will be at Bernstein in a few days 😊 ⏰ Apply before October 11: www.jobbnorge.no/en/available...
jobbnorge.no
PhD in Computational Neuroscience (307990) | NTNU - Norwegian University of Science and Technology
Job title: PhD in Computational Neuroscience (307990), Employer: NTNU - Norwegian University of Science and Technology, Deadline: Sunday, October 11, 2026
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Nanthia Suthana @suthanalab.bsky.social · 16/09/2026
New tenure-track faculty position at Duke! The Neurobiology department is looking for a computational neuroscientist. Join a highly collaborative & interdisciplinary community. My time at Duke has been amazing so far & we would love the opportunity to collaborate with you! Applications due Dec 1.
academicjobsonline.org
Duke University, Neurobiology
Job #AJO32697, Tenure Track Assistant Professor - AI/ML Neurobiology, Neurobiology, Duke University, Durham, North Carolina, US
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Melanie Mitchell @melaniemitchell.bsky.social · 08/09/2026
Hey @ericlipton.nytimes.com 👋 AI is not “evolving” on its own. *People* are choosing how to build it. *People* are choosing how to train it. *People* are choosing how to run it. Maybe the problem is that they are the *wrong people* to make these choices.
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Andrej Bicanski @andrejbicanski.bsky.social · 07/09/2026
New Dentate Gyrus model by @vstudenyak.bsky.social !
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Viktor Studenyak @vstudenyak.bsky.social · 07/09/2026
New preprint from my PhD at MPI CBS 🧠, with @doellerlab.bsky.social and @andrejbicanski.bsky.social “A computational model of the two dentate gyrus blades” What mechanisms allow the two DG blades to support distinct coding regimes? (www.biorxiv.org/content/10.6...) 1/9
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Andrej Bicanski @andrejbicanski.bsky.social · 05/09/2026
Who needs cortex anyway? ;)
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Reposted by Andrej Bicanski
Jieyu Zheng @jieyusz.bsky.social · 04/09/2026
How fast can mice learn complex mazes? With @mameister4.bsky.social we reveal memory, generalization, latent learning, and remote credit assignment of mice in the Manhattan Maze. Do mice born without a cortex or hippocampus have them too? Check it out! www.biorxiv.org/content/10.6...
biorxiv.org
Rapid spatial cognition in mice, with and without neocortex and hippocampus
Rapid learning, memory, and generalization are often attributed to circuits of the neocortex and hippocampus, but their specific role remains unclear. To examine these cognitive abilities together in ...
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Andrej Bicanski @andrejbicanski.bsky.social · 05/09/2026
Super interesting. Haven’t had a proper look yet but my brain immediately went to this: idp.springer.com/authorize?re...
idp.springer.com
Behavioural repertory of cats without cerebral cortex from infancy - Experimental Brain Research
Bilateral removal of the cerebral cortex was made in cats neonatally. Spontaneous and imposed behaviour was studied while they were growing up and after they had become adult. Special emphasis was put...
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Doeller Lab @doellerlab.bsky.social · 24/08/2026
🧠 Next Mind Meeting Talk! @suthanalab.bsky.social will give a talk titled: Neural Dynamics of Human Memory in the Real World. 🗓 August 27 | 3:00 PM 📍 In person (Zoom available) We look forward to seeing you!
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Andrew MacAskill @macaskillaf.bsky.social · 20/08/2026
Congrats @jespass.bsky.social on her new paper! PFC is widely thought to talk to HPC via nucleus reuniens - but no one has tested if this actual connectivity exists. Turns out it's wired to block it: PFC inputs to reuniens contact only neurons projecting back to PFC, not ones projecting to HPC. 🧪🧠📈
biorxiv.org
Nucleus reuniens is organised as parallel circuits rather than a prefrontal-hippocampal relay
Interactions between the prefrontal cortex (PFC) and hippocampus (HPC) are crucial for flexible and memory guided behaviour. Because there are no direct projections from PFC to HPC, it is widely presu...
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Andrej Bicanski @andrejbicanski.bsky.social · 17/08/2026
"...This exercise teaches us nothing about either animal ..." Useful precisely because absurd.
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John Tuthill @tuthill.bsky.social · 17/08/2026
Our digital sphinx, a cautionary tale about the interpretation of connectome-body models, is now a reviewed preprint at @elife.bsky.social. We are grateful to the reviewers for engaging seriously with what we hope is a useful (if absurd) demonstration. elifesciences.org/reviewed-pre...
elifesciences.org
The digital sphinx: Can a worm brain control a fly body?
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Doeller Lab @doellerlab.bsky.social · 14/07/2026
Join us at @mpicbs.bsky.social as a fully funded 4-year PostDoc (m/f/d) in Cognitive & Computational Neuroscience (Area: Functions of the Perirhinal Cortex). Excellent infrastructure with a leading scientific network. Apply by 17 August: recruitingapp-5218.de.umantis.com/Vacancies/44...?
recruitingapp-5218.de.umantis.com
Fully funded PostDoc Position (m/f/d) for 4 years in Cognitive and Computational Neuroscience (Area: Functions of the Perirhinal Cortex) - Doeller Lab | Karriereportal Max-Planck-Institut für Kogniti...
Fully funded PostDoc Position (m/f/d) for 4 years in Cognitive and Computational Neuroscience (Area: Functions of the Perirhinal Cortex) - Doeller Lab | Karriereportal Max-Planck-Institut für Kogniti...
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Neil Burgess @neilburgess10.bsky.social · 08/08/2026
Great to see Ellie Spens’ model out! Interplay btwn episodic (hippo) & semantic (neocort’l) systems, in encoding, consolidatn, recall & problem solving with sequential info, as compressive retrieval-augmented generation. Inc gist-based distortion in stories & inference www.nature.com/articles/s41...
nature.com
Hippocampo-neocortical interaction as compressive retrieval-augmented generation - Nature Communications
Here the authors model interactions between episodic and semantic memory as ‘retrieval-augmented generation’, explaining consolidation of structure from sequential experience, the reconstruction and d...
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Neuroskeptic @neuroskeptic.bsky.social · 28/07/2026
Errors or Adaptations? A Critical Review of Predictive Processing in Psychiatry pubmed.ncbi.nlm.nih.gov/42510237/ Hmmm...
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Ricard Solé @ricardsole.bsky.social · 19/07/2026
Why is reading so fundamental to the human mind? In this fascinating paper, @standehaene.bsky.social & Co show how literacy reshapes and connects the brain’s visual and language systems. A timely reminder of what education could lose if LLMs replace reading & writing. www.unicog.org/publications...
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Andrej Bicanski @andrejbicanski.bsky.social · 14/07/2026
Postdoc position on Perirhinal Cortex function in Leipzig!
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Doeller Lab @doellerlab.bsky.social · 04/06/2026
Join us at the Max Planck Institute in Leipzig as a fully funded 4-year postdoc position (m/f/d) in Cognitive and Computational Neuroscience (Area: Social Cognition). Excellent infrastructure with a leading scientific network. Apply by 13 July: recruitingapp-5218.de.umantis.com/Vacancies/44...?
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Caswell Barry @caswell.bsky.social · 23/06/2026
Really excited about this work with the awesome Will de Cothi & @shipleysj.bsky.social, out in Nature Reviews Neuroscience. We propose acetylcholine is an analogue of dopamine — tracking not reward prediction errors but state-transition prediction errors. doi.org/10.1038/s41583-026-01058-w
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Steve Fleming @smfleming.bsky.social · 20/06/2026
Get submitting to OpenMind!! Not a bad deal :-)
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Tim Viney @vineytj.bsky.social · 10/06/2026
New paper out in Current Biology. We define thalamic head direction (HD) cells based on the combination of neurochemical identity, physiology, sensorimotor responses, and connectivity, suggesting cell types. Great work led by Sara Hijazi and Shan Jiang from the lab. www.cell.com/current-biol...
cell.com
Diversity and sensorimotor specialization of head direction cells in the mouse thalamus
Hijazi and Jiang et al. identify distinct head direction (HD) cell subpopulations in the mouse anterodorsal thalamic nucleus, based on the combination of firing patterns, connectivity, and neurochemic...
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Roddy Grieves @roddy-grieves.bsky.social · 05/06/2026
Ever wonder how your brain navigates the real world? 🧠 Most spatial navigation studies use flat, 2D mazes. But the real world is hilly, irregular, and bumpy! ⛰️ Our new paper in #ScienceAdvances asked a simple question: How does the brain map uneven terrain? 📄 doi.org/10.1126/scia... 🧵👇️️️ 1/
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Andrej Bicanski @andrejbicanski.bsky.social · 17/06/2026
Clearly I should log into Bluesky more regularly :). Very interesting work @roddy-grieves.bsky.social !
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Andrej Bicanski @andrejbicanski.bsky.social · 05/06/2026
Great postdoc opportunity.
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Doeller Lab @doellerlab.bsky.social · 05/05/2026
🧠 Next Mind Meeting Talk! Jennifer Li and Drew Robson from the RoLi Lab at @mpicybernetics.bsky.social will give a talk titled: Uncovering the neural mechanisms of spatial cognition with behavior-aware autonomous microscopes.
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Andrej Bicanski @andrejbicanski.bsky.social · 02/05/2026
Been thinking about this topic for a while but never seen it expressed this well. Thank you @tonyzador.bsky.social www.thetransmitter.org/machine-lear...
thetransmitter.org
Can AI do neuroscience without understanding?
Prediction without understanding sustained astronomy through a thousand years of epicycles. Artificial intelligence is now offering neuroscience the same deal.
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Kate Jeffery @katejj.bsky.social · 21/04/2026
Job alert! We are seeking a rodent in vivo electrophysiologist to work on coordination between anterior thalamus and hippocampus in rats using Neuropixels. Beautiful Scotland, leading university (Glasgow) and vibrant intellectual setting. Post is 23 months but hopefully extensible. Details here 👇
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Simon Kern @skjerns.de · 10/04/2026
Can we really measure replay in humans using MEG with current methods? In our most recent paper we simulated replay under realistic conditions via a novel hybrid approach with astonishing results. we're delighted that it has now been published @elife.bsky.social! elifesciences.org/articles/108...
cimh-clinical-psychology.github.io
TDLM-Resting-State Simulation
How sensitive is TDLM really? Can we actually find replay when we know it is present?
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Andrej Bicanski @andrejbicanski.bsky.social · 08/04/2026
New paper from the Neural Computation Group: "A theory of subicular function and generalized vector coding." by @ffeiwang.bsky.social. Link to preprint and a quick overview in Fei's short thread.
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Andrej Bicanski @andrejbicanski.bsky.social · 06/04/2026
Arguably spending "years of my training learning to translate scientific thinking into models and code" is part of what made you a capable. Question is, does something go missing when one relies on AI from the get-go? This article sums that notion up pretty well. ergosphere.blog/posts/the-ma...
ergosphere.blog
The machines are fine. I'm worried about us.
On AI agents, grunt work, and the part of science that isn't replaceable.
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Andrej Bicanski @andrejbicanski.bsky.social · 03/04/2026
New book on navigation (open access). The result of the Ernst Strüngemann Forum 2024. Was great to be there and discuss for a week with 50+ wonderful colleagues. Many thanks to the organizers, Julia Lupp + ESF team, the editors @noranewcombe.bsky.social, Ken Cheng link.springer.com/book/10.1007...
link.springer.com
Challenges in Navigation Research
This open access book explores navigation across species using a multidisciplinary approach to address challenges in research and clinical applications.
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Tommaso Patriarchi @tpatriarchi.bsky.social · 27/03/2026
Wait… localized norepinephrine transients in the awake visual cortex?! Who would have guessed this neuromodulatory signal is that spatially precise, right where visual processing is happening. Brain state control just got a lot more local. @ruedigersarah.bsky.social www.nature.com/articles/s41...
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Andrej Bicanski @andrejbicanski.bsky.social · 27/03/2026
"The digital sphinx produces highly realistic fly walking - yet it is biologically meaningless. This exercise teaches us nothing about either animal and exposes a core peril of connectome-body models: behavioral fidelity is achievable without biological fidelity..." www.biorxiv.org/content/10.6...
biorxiv.org
The digital sphinx: Can a worm brain control a fly body?
Animal intelligence is not purely a product of abstract computation in the brain, but emerges from dynamic interactions between the nervous system and the body. New connectome datasets and musculoskeletal models now enable integrated, closed-loop simulations of the neural and biomechanical systems of the fruit fly Drosophila, an ideal model organism to investigate embodied intelligence. However, many biological parameters of the nervous system and the body, as well as how they interface, remain unknown. To fill such gaps, researchers are turning to deep reinforcement learning (DRL), a data-driven optimization framework, to create virtual animals that imitate the behavior of real animals. Here, we provide a cautionary tale about the interpretation of such models. We constructed a virtual chimera of two phylogenetically distant species: a connectome of the C. elegans nematode worm and a biomechanical model of the fly body. The worm connectome receives sensory information from the fly body, and an artificial neural network is trained with DRL to map worm motor neuron activations to the fly's leg actuators. The resulting digital sphinx produces highly realistic fly walking - yet it is biologically meaningless. This exercise teaches us nothing about either animal and exposes a core peril of connectome-body models: behavioral fidelity is achievable without biological fidelity, making such models easy to overinterpret. Done carefully, virtual animals can be powerful partners to biological experiments, but only if their components and interfaces are grounded in biology. ### Competing Interest Statement The authors have declared no competing interest. NIH, U01NS136507, R01NS14543
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Matteo Guardamagna @matteoguardamagna.bsky.social · 11/03/2026
1/7 🧠 My journey into development begins with this work and question: how does the brain's spatial navigation system develop? We found that the neural networks for spatial navigation (tori and rings) are preconfigured and only later anchor gradually to the world with experience! 🧵
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Edvard I Moser @edvardmoser.bsky.social · 11/03/2026
Is spatial navigation innate 🧠? Using #NeuroPixels we show that the #torus 🍩 underlying the #GridCell map exists already on day 10 in rats — before pups open eyes and ears and before they start upright walking. 🧵1:4 👇 www.biorxiv.org/content/10.6...
biorxiv.org
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Andrej Bicanski @andrejbicanski.bsky.social · 10/03/2026
Sure. Maybe we can have a brief chat at Cosyne.
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Andrej Bicanski @andrejbicanski.bsky.social · 09/03/2026
19/N: Finally, you’ll all be glad to hear this is – for once – a short paper ;). I hope people find it interesting.
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Andrej Bicanski @andrejbicanski.bsky.social · 09/03/2026
19/N: Massive thanks to @doellerlab.bsky.social at @mpicbs.bsky.social for the scientific environment in which these ideas could mature, and to @vigano.bsky.social, @stephanie-theves.bsky.social, @vstudenyak.bsky.social, @keckjanis.bsky.social, and my group for discussions.
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Andrej Bicanski @andrejbicanski.bsky.social · 09/03/2026
18/N: The reliance on extant spatial navigation architectures also means we get all the machinery of spatial memory for free. Replay, remapping, the role of theta, etc. Post learning adjustment … though not modeled here.
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Andrej Bicanski @andrejbicanski.bsky.social · 09/03/2026
17/N – D3: The model works with discontinuous stimulus spaces (OASIS being positive proof that this is needed) but would also be compatible with morphing/continuous navigation in abstract space. In the BB model paper @NeilBurgess10 and I proposed a model of mental navigation that could be used.
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Andrej Bicanski @andrejbicanski.bsky.social · 09/03/2026
16/N - D2: I see this as in line with Eichenbaum & Cohen’s (also articulated by others) conjecture that we can unify the spatial navigation view of the hippocampal formation with the memory view. The present model makes this explicit for abstract cognition.
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Andrej Bicanski @andrejbicanski.bsky.social · 09/03/2026
15/N: A bit of mini discussion - D1: Here grid cells are not latent variables in an ML architecture, but rather pre-existing, re-purposed from spatial navigation with minimal (plausible) assumptions (like velocity scaling).
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Andrej Bicanski @andrejbicanski.bsky.social · 09/03/2026
14/N: What I personally find satisfying here: the same mechanisms that are used to build the map (VNA and PIN) are the ones that subsequently operate on it to implement reasoning (e.g., the analogies above). No additional machinery. Different combination for different operations that could transfer
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Andrej Bicanski @andrejbicanski.bsky.social · 09/03/2026
13/N: Similarly we can combine PIN and VNA in various ways to compute the key quantities for perspective taking in abstract space (similar to the 2023 study by @vigano.bsky.social) or Subspace construction. Like a composable set that could transfer. More types of reasoning outlined in the paper.
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Andrej Bicanski @andrejbicanski.bsky.social · 09/03/2026
12/N: Now the fun part. Once we have anchored stimuli to the map we can do abstract reasoning. Say we have grid cell PVs for points A and B and the displacement vector. Then we pick a random point C. Do PIN(C,d) = D. Now we know C is to (a stimulus near) D as A is B. We got an analogy.
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Andrej Bicanski @andrejbicanski.bsky.social · 09/03/2026
11/N To check that mapping is successful, we recover grid cells from memorized PVs and bin them. Recovered grids are a proxy for what one would record. This works if, and only if, the mapping respects stimulus relations. Scrambling similarities breaks these recovered grids, as it should.
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