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Angelos Amyntas

@amyntas.bsky.social
1.3K followers 1.1K following 191 posts

amynang.github.io/ ecologist, postdocing in Anne McLeod's Computational Ecology group @igb-berlin.de Stechlin #FoodWebs, #CommunityEcology keeping an ear on the ground for anything #Bayes, #OpenScience, #MetaScience Neustrelitz, Germany

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Reposted by Angelos Amyntas
Itai Yanai @itaiyanai.bsky.social · 10/10/2026
1. CRISPR came from basic research on bacteria. 2. Optogenetics started with a discovery in algae. 3. The GFP protein comes from jellyfish. The biggest breakthroughs all trace to scientists following their curiosity, and this is one huge reason why we must keep funding basic research!
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Paul Fairie @paulisci.bsky.social · 09/10/2026
Whenever I see people saying that generative AI art is great because it can satisfy your exact personal preferences, I think of this: en.wikipedia.org/wiki/The_Peo...
en.wikipedia.org
The People's Choice Music - Wikipedia
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Jess Keating @jesskeatingbooks.bsky.social · 05/10/2026
Hey yeah, friendly reminder that men denying or minimizing the work of women and taking credit for it themselves happens so much we have a NAME for it. (It’s the Matilda Effect.) 2nd fun fact: I’ve written many bios of women in STEM at this point and this is *always a factor in their history*
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worm @rfksbrainworm.bsky.social · 02/10/2026
If you ever wondered why visible light is those particular wavelengths, it's because life evolved to see in the narrow range where water is transparent
Diagram of absorption of emf by water. There's a gap right that dips in the 500 nm range
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Jonathan Dushoff @jdushoff.bsky.social · 02/10/2026
Our department is looking for a tenure-track plant biologist! See www.academicwork.ca/jobs/tenure-.... Vibrant department; liveable city; friendly country (Canada); new greenhouse facility ...
academicwork.ca
Tenure-Track Assistant Professor in Plant Biology
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Angelos Amyntas @amyntas.bsky.social · 29/09/2026
Yep. I frequently thing about thinks.
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Angelos Amyntas @amyntas.bsky.social · 27/09/2026
Perhaps @alkistiseg.bsky.social might have some suggestions more focused on ecology?
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Angelos Amyntas @amyntas.bsky.social · 27/09/2026
Weisberg's Simulation and Similarity is not "intro"; it's about the role of models of various forms in science. It gets a bit hairy at places.
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Angelos Amyntas @amyntas.bsky.social · 27/09/2026
The Golem by Collins and Pinch is not quite what you are asking but falls within the more general HPS category and was really interesting.
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Angelos Amyntas @amyntas.bsky.social · 27/09/2026
Chalmer's What Is This Thing Called Science? was accessible and had fairly good coverage of various schools of thought.
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Joe Brennan @biologyjoe87.bsky.social · 24/09/2026
Anyone have recommendations for intro philosophy of science books (open to general science or biology specifically, and pop sci or technical)?
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Angelos Amyntas @amyntas.bsky.social · 27/09/2026
@anthonymoser.com I think this one would fit nicely in your growing thread...
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Angelos Amyntas @amyntas.bsky.social · 27/09/2026
"The greatest contributions to humanity — art, inventions, even products — show evidence of people who got lost in a problem and came out the other side with an idea they would not have found otherwise. That does not happen by taking a shortcut to the center. It happens in the detours."
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Jelena Pantel @jhpantel.bsky.social · 25/09/2026
Consider joining the great group at Young Modellers in Ecology --> Lunchbox Models seminar series. You can hear a bit more about what I've been up to for the last few years in terms of mathematical / statistical models to identify eco-evo dynamics, and also hang out for the exchange session after.
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Dan Lewer @danlewer.bsky.social · 25/09/2026
Debating with colleagues about the practice of "deseasoning and deweathering" air pollution data before use in time series analysis. I can't see why you don't use the raw pollution data and model season/weather variables like normal confounders (independent variables). Can anyone defend this?
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Angelos Amyntas @amyntas.bsky.social · 25/09/2026
I was wrong. Also, now I get what you meant by "the mean across your levels"; in contrast to the mean of the population the levels are assumed to be sampled from. I guess the difference between these two does not matter if we are interested in contrasting the levels themselves.
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Angelos Amyntas @amyntas.bsky.social · 25/09/2026
During my phd, I had to deal with an excel sheet from someone who did that before it was cool, separating individual values with ; except when they occasionally used , just to keep things interesting. So perhaps this new functionality might make it easier for us to unfuck this?
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Elisabeth Bik @elisabethbik.bsky.social · 19/06/2026
I don't want a Reader Environment. I just want to see the PDF.
Screenshot. 
"Reader environment loading"
and a spinning wheel.
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Mattan S. Ben-Shachar @mattansb.msbstats.info · 24/09/2026
This quote by haunts me. From Wilcox's "Introduction to Robust Estimation and Hypothesis Testing" #stats
To begin, distributions are never normal. For some this seems obvious, hardly worth mentioning, but an aphorism given by Cram´er (1946) and attributed to the mathematician Poincar´e remains relevant: “Everyone believes in the [normal] law of errors, the experimenters because they think it is a mathematical theorem, the mathematicians because they think it is an experimental fact.”
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Systems Ecology @systems-ecology.bsky.social · 21/09/2026
🌱 Systems Ecology is now live! A new independent, researcher-run, diamond OA journal for ecological research through systems science. Free to read. Free to publish. No APCs. We are now open for submissions: systems-ecology.org Please help spread the word!
systems-ecology.org
Systems Ecology
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Smooth Dunk @smoothdunk2.bsky.social · 20/09/2026
when ai leaves u behind
7 panel comic.

Panel 1:
A Red Guy with AI across his chest looks like he’s about to run away. A Yellow Guy stands next to him. Red Guy says “I’m the future, buddy. You comin’?”
Yellow Guy replies “Nah”

Panel 2: 
Red Guy is almost out of the panel. He leans in and says “Enjoy getting left behind, pal”
Yellow Guy replies “ok”

Panel 3:
Yellow Guy stands alone.

Panel 4: 
Close up on Yellow Guy, there is a quiet “huff-huff-huff” noise coming from behind him

Panel 5:
Yellow Guy turns to look behind him

Panel 6: 
Close up on Yellow Guy’s face as if from the point of view of an attacker.
Yellow Guy yells “Jesus Christ”

Panel 7:
AI Red Guy is now chasing the Yellow Guy. 
Red Guy: “Use me”
Yellow Guy “No”
Red Guy “USE ME”
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Richard McElreath 🐈‍⬛ @rmcelreath.bsky.social · 18/09/2026
Happy to see others emphasizing traceability (Nachvollziehbarkeit) over simple reproducibility. Let’s make fetch happen!
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Francisco Rodriguez-Sanchez @frodsan.bsky.social · 18/02/2026
Periodic reminder that we should avoid testing the Normality of the response variable. For a linear model, what matters is the Normality of residuals (and not that much). Visual checks better than test. #statistics
A Shapiro-Wilk test of the response variable concludes very significant deviation of Normality. But residuals of linear model consistent with Normal distribution.Visual check of the linear model with DHARMa
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Angelos Amyntas @amyntas.bsky.social · 13/09/2026
I don't get the coffee beans. Whose armpits smell like that?
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Angelos Amyntas @amyntas.bsky.social · 13/09/2026
Always were.
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Angelos Amyntas @amyntas.bsky.social · 13/09/2026
There's a pitfall; student feels insecure to share draft/code with experienced colleague so uses LLM to spruce it up before. But editing prose extruded by an LLM can be lot harder than editing a flawed human text (similar for debugging code) + you can often tell. Which can alienate said colleague.
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Angelos Amyntas @amyntas.bsky.social · 13/09/2026
With the non-centered param. you anyway estimate group level means with reference to the population one.
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Angelos Amyntas @amyntas.bsky.social · 13/09/2026
How is melancholic nostalgia different from vanilla nostalgia? I'd say the melancholy is already baked in. 😉
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Angelos Amyntas @amyntas.bsky.social · 13/09/2026
I think the source of my confusion was that brms already does that so it did not occur to me this is a choice you can do without.
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Angelos Amyntas @amyntas.bsky.social · 13/09/2026
OK but that's for the non-hierarchcal case. Which is is not what @matthollanders.bsky.social was talking about.
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Angelos Amyntas @amyntas.bsky.social · 13/09/2026
@matthollanders.bsky.social @benrosenbaum.bsky.social oh btw, McElreath does this in 13.4 of Rethinking. Here is @solomonkurz.bsky.social's brms version: solomon.quarto.pub/sr2/13.html#...
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Angelos Amyntas @amyntas.bsky.social · 13/09/2026
@benrosenbaum.bsky.social I was under the impression that, in brms, y ~ (1|treat) already does what Gelman/McElreath propose. What's the added benefit of the sum-to-zero constraint?
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Jago Hazzard @jagohazzard.bsky.social · 07/09/2026
When the war against the machines happens, I volunteer as a berserker. While I am normally a very calm person, an uncooperative piece of technology can somehow drive me into a near-volcanic rage.
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Angelos Amyntas @amyntas.bsky.social · 13/09/2026
Glad to find it's not only me!
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Angelos Amyntas @amyntas.bsky.social · 12/09/2026
I still remember the anxiety I felt watching this as a kid.
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Angelos Amyntas @amyntas.bsky.social · 12/09/2026
Best Star Trek crew, wrong answers only
Bugs Bunny, about to be plonked on the head by the gremlin in Falling Hare.
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Gregor Kalinkat @gkalinkat.bsky.social · 12/09/2026
„… solving problems is only a tool and proxy for achieving the primary goal of conceptual understanding and insight. Forgetting this in the world of AI may turn the tool against the primary goal.“ Urging everyone to read and share this
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Paul Smaldino @psmaldino.bsky.social · 11/09/2026
It's baffling how many "rah-rah AI" types seem to forget that (a) the process of solving a problem is often good for you, and (b) it's nice to have people around who have the experience of solving problems, (c) especially communities of such people.
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Angelos Amyntas @amyntas.bsky.social · 11/09/2026
This had been a dealbreaker for me on an otherwise great browser!
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Catherine Sheard @sheardcat.bsky.social · 10/09/2026
Susanne Fritz, who is great, is advertising a macroevolution/macroecology/biogeography postdoc at iDiv in Leipzig: jobs.uni-jena.de/jobposting/c...
jobs.uni-jena.de
Postdoctoral Researcher in Macroevolution and Macroecology
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Hanna Kokko @kokkonut.bsky.social · 26/08/2026
Come and work with us (the Kokkonuts) as a postdoc! Our research within (theory-evo-eco) is broad; let's say it's implicitly defined by the journal club papers we read. Which is why the application process includes a JC-related task, I hope it'll be a fun one for you! www.evoldir.net/brian/evoldi...
evoldir.net
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Ele Willoughby @minouette.bsky.social · 02/07/2025
Happy birthday to #physicist Harriet Brooks (1876 - 1933) who discovered atomic recoil, Radon & recognized radioactive elements could undergo chains of transmutations into a series of new elements. 🧪🐡👩🏼‍🔬🎢 #histsci ⁠ She was Rutherford’s 1st grad student at McGill. After publishing her results in 1899
My 9.25" x 12.5" linocut portrait of physicist Harriet Brooks (1876 - 1933) in a gradient of turquoise to green, shows her and her discovery of atomic recoil in gold (Radon gives off an alpha particle and daughter nucleus goes in opposite direction).   A series of diagrams at the bottom shows how the Rutherford research group understood chains of radioactive active transmutations at the time.
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Aaditya Narasimhan @aaditya320.bsky.social · 20/08/2026
postdoc position at the University of Basel in my old group on selection and adaptation across species' elevational ranges. there are 2 datasets available: 1) a climate chamber expt on 4 Brassicaceae herbs, 2) from a field transplant expt at different elevations. please share! #EvoSky
jobs.unibas.ch
Universität Basel: Postdoc fellowship in Phenotypic Plasticity & Selection Analysis (100%)
The group of Plant Ecology and Evolution at the University of Basel, Switzerland (https://duw.unibas.ch/en/ecoevo/), is looking for a postdoc to lead the analyses and publishing of data collected in a...
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Erich Fischer @erichfischer.bsky.social · 21/08/2026
Projection has become reality 22 years ago, Christoph Schär et al. published a landmark paper in Nature explaining that the 2003 heatwave was a harbinger of things to come. The study featured an iconic figure - shown in countless lectures - illustrating how outlandish the event was at the time
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Mary Dudziak @marydudziak.bsky.social · 18/08/2026
Beginning my research seminar, as always, with Lynn Hunt's essay How Writing Leads to Thinking (and Not the Other Way Around). Should be mandatory reading in light of the impact of AI. www.historians.org/perspectives...
Writing is stressful. Sitting in my computer chair my neck and shoulder muscles almost immediately tense up as I dig around in my brain for the best phrase or even any coherent string of words, whether I am writing an essay like this one, a book chapter, a letter of recommendation, or an email message to a friend. Writing is time-consuming. It’s a great way to pass the time on a long airplane flight because you lose track of the passage of time altogether. It’s even better, from that point of view exclusively, than watching an episode of Mad Men on your laptop. Writing means many different things to me but one thing it is not: writing is not the transcription of thoughts already consciously present in my mind. Writing is a magical and mysterious process that makes it possible to think differently.
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Aki Vehtari @avehtari.bsky.social · 13/08/2026
All four books I've co-authored are freely available online for non-commercial use: - Bayesian Workflow at avehtari.github.io/Bayesian-Wor... Links to other three books are in the quoted post 👇 (too many books to fit in one post!)
avehtari.github.io
Bayesian Workflow book: Website – Bayesian Workflow book
Website for the Bayesian Workflow book by Gelman, Vehtari, McElreath, et al. — case studies, code, and exercises in R and Stan.
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Angelos Amyntas @amyntas.bsky.social · 09/08/2026
Your experience sounds similar to copy editors', who've said it can be impossible to unfuck genAI extruded prose, in contrast to flawed human prose.
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Owen Smith @owensmithguitar.bsky.social · 09/08/2026
As the guy who is being brought in to cleanup the mess left by other developers who use GenAI: I can assure you, mimicing the output of a developer is not the same thing as being able to think, design and implement like a developer.
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Systems Ecology @systems-ecology.bsky.social · 08/08/2026
We're pleased to share that Systems Ecology has now received its eISSN (3143-5769) and is a Crossref member with DOI prefix 10.67837. These are important steps as we prepare for our public launch in September. Free to read. Free to publish. systems-ecology.org
systems-ecology.org
Systems Ecology
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Michael Meyer @mishafredmeyer.bsky.social · 06/08/2026
Very excited to share that our Zooplankton International Geospatial (ZIG) data paper is out in @aslo.org LO Letters! We harmonized data across decades from 311 lakes and released it to the wild for folks to dream up their own analyses! doi.org/10.1002/lol2...
doi.org
The Zooplankton International Geospatial dataset: A global repository of spatiotemporal freshwater zooplankton community composition data from lakes and reservoirs to support ecological research
Zooplankton transfer substantial energy in aquatic food webs and are used as indicators of environmental change. Syntheses of zooplankton community dynamics globally require datasets that span a wide...
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