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Ali Shariati

@ali-shariati.bsky.social
59 followers 70 following 19 posts

Assistant Professor of Biomolecular Engineering at UCSC shariatilab.sites.ucsc.edu

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Reposted by Ali Shariati
UC Santa Cruz @ucsantacruz.bsky.social · 22/09/2026
For more than three decades, El Centro and the Dolores Huerta Research Center have fostered joy, opportunities, and community for Chicane and Latine students. From volunteering to donating, you can support our students this Hispanic Heritage Month. Follow the link: bit.ly/3Tmg3wT
Smiling graduates at the 2026 UCSC Chicane/Latiné Year-End Celebration.
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Reposted by Ali Shariati
Estefania Sanchez-Vasquez @niasv.bsky.social · 21/09/2026
I am absolutely thrilled to share that my K99/R00 has officially been funded by NIGMS! 🥳 Huge thanks to @ali-shariati.bsky.social and my peers in the lab, all my incredible mentors, and the MCD and BME community at UCSC. So excited for this next chapter! 🧬✨
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Kate Cavanaugh @katecavanaugh.bsky.social · 25/08/2026
And finally—a bit of personal news: 🔬 I’m on the faculty job market this year! I’m looking for tenure-track opportunities where I can build a lab at the intersection of developmental biology, mechanobiology, reproductive biology & aging.
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Miki Ebisuya @ebisuyamiki.bsky.social · 13/08/2026
New paper from the lab! authors.elsevier.com/sd/article/S... We find that protein degradation is broadly slower in human segmentation clock cells than in mouse cells, regardless of the degradation pathway or protein category! 1/
authors.elsevier.com
Systematic differences in protein stability underlie species-specific developmental tempo
Human embryonic development proceeds more slowly than in mice. The segmentation clock offers a tractable model for studying species-specific developme…
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Vincent Pasque @pasquelab.bsky.social · 13/08/2026
Delighted to see our book on Stem Cell-Based Human Embryo Models published in Methods in Molecular Biology. link.springer.com/book/10.1007...
link.springer.com
Stem Cell-Based Human Embryo Models
This book covers diverse aspects of stem cell research and exemplifies some of the developments and improvements in the field.
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Stirling Churchman @stirlingchurchman.bsky.social · 28/07/2026
RNA-seq tells us how much RNA is present in the cell. But to understand gene regulation, we need to easily measure the synthesis and decay rates driving this abundance. We introduce AIR-seq: analog intrinsic recoding sequencing. (1/6) www.biorxiv.org/content/10.6...
biorxiv.org
Analog intrinsic recoding measures RNA dynamics without chemical conversion
Steady-state RNA abundance measurements mask the synthesis and decay rates that shape gene expression. Analog intrinsic recoding sequencing (AIR-seq) repurposes the base-pairing properties of N4-hydro...
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Ali Shariati @ali-shariati.bsky.social · 21/05/2026
It is CDK2 season in our lab: two preprints linking CDK2 to cell fate decisions. In one study, we mapped the CDK2 substrate network in mouse ESCs & uncovered a new CDK2 link to genome integrity via HMCES. A collaboration with my friend Mardo Koivomagi: www.biorxiv.org/content/10.6...
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Olivia Guest · Ολίβια Γκεστ @olivia.science · 14/05/2026
Published with some minor changes! Please share widely. 😊 Guest, O., Suarez, M., ... & van Rooij, I. (2026). Against the Uncritical Adoption of 'AI' Technologies in Academia. Digital Culture & Education, 16(2), 85–118. doi.org/10.5281/zeno... Journal: www.digitalcultureandeducation.com/volume-162
digitalcultureandeducation.com
Volume 16.2 — Digital Culture & Education (ISSN: 1836-8301)
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Molecular Biology and Evolution @molbioevol.bsky.social · 03/03/2026
@russcd.bsky.social ushers in a new era of academic metrics with the core-pivotal author index, which assigns all credit to authors that occupy the exact center of the author list, while non-central peripheral authors receive no credit whatsoever. 🔗 doi.org/10.1093/molbev/msag026 #evobio #molbio
doi.org
The core-pivotal index: a geometry-first approach to academic impact
The defining goal of the academic endeavor is to establish a single perfect value that completely summarizes entire careers’ achievements. Such an index wo
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Reposted by Ali Shariati
ISSCR @isscr.org · 24/02/2026
Ali Shariati (Ali Shariati), a Stem Cell Reports Early Career Editor, highlights the value of ISSCR membership! Join us to access year‑round scientific content, member‑only savings on meetings and publishing, and more 👉 bit.ly/4eOL2H1
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Ali Shariati @ali-shariati.bsky.social · 30/12/2025
This meeting is going to be awesome! Sign up for great science on an epically beautiful campus nestled among towering redwoods with views of the Pacific Ocean 🌲🌊
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Ali Shariati @ali-shariati.bsky.social · 05/12/2025
Genomics #postdocs: applications are open for our Next Wave of Faculty in Genomics Symposium (due Jan 15)!. Come share your science in Santa Cruz, home of redwoods, ocean views, and the world’s most unbothered mascot:🐌🌲🌊. Link: genomics.ucsc.edu/calendar_eve... @baskinengineering.bsky.social
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Mehdi Jafarnejad @rnanomad.bsky.social · 03/10/2025
@alf-castello.bsky.social & I are inviting applications for a competitive PhD studentship to study the mechanisms of translational regulation of the host response to RNA virus infections. The student will be based at Uni. Glasgow. Please spread the word. #RNASky www.gla.ac.uk/postgraduate...
gla.ac.uk
University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - Our Projects - Understanding Pathogens, from Molecules to Phenotypes - Alfredo Castello
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Ali Shariati @ali-shariati.bsky.social · 26/09/2025
Together with the Rubin lab @ucsantacruz.bsky.social , we found a surprise: E2F1 drives cells from G0 through the full cell cycle by activating many genes without altering chromatin accessibility! Brilliant work by first author Gerrald Lodewijk, now on the faculty job market,an exceptional scientist
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Reposted by Ali Shariati
Stem Cell Reports @stemcellreports.bsky.social · 02/10/2025
Stem Cell Reports welcomes new researchers to its Editorial Board. Their appointments reinforce the Board’s commitment to championing the journal, raising its global visibility, and ensuring rigorous, high-quality peer review. Read more: ow.ly/YicL50X5QJF
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Ali Shariati @ali-shariati.bsky.social · 26/09/2025
Together with the Rubin lab @ucsantacruz.bsky.social , we found a surprise: E2F1 drives cells from G0 through the full cell cycle by activating many genes without altering chromatin accessibility! Brilliant work by first author Gerrald Lodewijk, now on the faculty job market,an exceptional scientist
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Reposted by Ali Shariati
Trends in Cell Biology @cp-trendscellbio.bsky.social · 03/09/2025
Understanding human embryogenesis by building programmable stem cell-based models
dlvr.it
Understanding human embryogenesis by building programmable stem cell-based models
Stem cell-based embryo models provide an alternative system to study an elusive period of development. Programmed mouse embryo models have recently been generated by activating two endogenous regulatory elements via epigenome editing. In this forum article, we discuss this achievement along with the potential of translating it to engineering models of human embryogenesis.
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Ali Shariati @ali-shariati.bsky.social · 03/09/2025
In this short article, we share our thoughts on how integrating synthetic biology tools 🛠️ into stem cell–based embryo models can improve their controllability and enhance their capabilities; cell.com/trends/cell-... 🧵1/2
cell.com
Understanding human embryogenesis by building programmable stem cell-based models
Stem cell-based embryo models provide an alternative system to study an elusive period of development. Programmed mouse embryo models have recently been generated by activating two endogenous regulato...
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Ali Shariati @ali-shariati.bsky.social · 03/07/2025
Hard to fully celebrate anything these days with so much happening around the world. Still, I’m grateful for the chance to support our stem cell community @isscr.org ‬as a new early career editor @stemcellreports.bsky.social. Looking forward to receiving your stem cell manuscripts! #stemcells
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Ali Shariati @ali-shariati.bsky.social · 05/06/2025
Really grateful to @bernasozen.bsky.social and @harrymcnamara.bsky.social for their thoughtful preview of our CRISPRa-programmed embryo model in @cp-cellstemcell.bsky.social. Love the title and the insight. means a lot to us!🙏🏾
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Ali Shariati @ali-shariati.bsky.social · 31/05/2025
We wrote this step-by-step method to make it easier for more labs to use CRISPRa to program early embryonic development. Happy to help if you want to start with this or refine your system. Huge thanks to our coauthors and editors link.springer.com/protocol/10.... #stemcells #embryo #crispr
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Reposted by Ali Shariati
Baskin Engineering at UC Santa Cruz @baskinengineering.bsky.social · 30/05/2025
[1] Expert in cell segmentation @ali-shariati.bsky.social said that the field of spatial transcriptomics has advanced rapidly in recent years, but accurately defining cell boundaries so that transcripts can be assigned to the correct cell with high precision has remained a key bottleneck.
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Stem Cell Podcast @stemcellpodcast.com · 07/04/2025
New from Dr. @ali-shariati.bsky.social's lab: Dr. Gerrald Lodewijk and Sayaka Kozuki used #CRISPR activation to enable the self-organization of mouse ESCs into pre-gastrulation embryo models! 📃 @cp-cellstemcell.bsky.social - bit.ly/3QYzW8x 🎙️- bit.ly/3R0KMuB
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Ali Shariati @ali-shariati.bsky.social · 26/03/2025
Human cells differ in size by ~5 orders of magnitude! Interesting read on how surface to volume ration and diffusion determines limits of a cell's size! www.asimov.press/p/cell-size?... #CellBiology
asimov.press
What Limits a Cell’s Size?
Two physical constraints help explain why cells are so tiny: surface area-to-volume ratios and diffusion. The first article in our new Data Series.
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Ali Shariati @ali-shariati.bsky.social · 25/03/2025
To my 12 followers: please spread the word about this exciting teaching faculty #job opportunity! #AcademicChatter #Facultyjob
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Reposted by Ali Shariati
Cell Stem Cell @cp-cellstemcell.bsky.social · 21/03/2025
Online Now! Lodewijk et al. develop a CRISPRa-programmed embryo model using mouse pluripotent cells. By introducing controllable CRISPR activation tools into pluripotent cells, they enabled the efficient generation of a reproducible model. These tools were also used to disrupt… #stemcells
dlvr.it
Self-organization of mouse embryonic stem cells into reproducible pre-gastrulation embryo models via CRISPRa programming
Lodewijk et al. develop a CRISPRa-programmed embryo model using mouse pluripotent cells. By introducing controllable CRISPR activation tools into pluripotent cells, they enabled the efficient generation of a reproducible model. These tools were also used to disrupt developmental pathways, offering a method to study mechanisms of developmental disorders.
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Ali Shariati @ali-shariati.bsky.social · 20/03/2025
👋 first post here! I’m excited to start by sharing our work on CRISPRa-programmed embryo models! We show that CRISPR activation of 2 elements is sufficient to form an embryo model similar to a natural embryo www.sciencedirect.com/science/arti... @cp-cellstemcell.bsky.social @ucscgenomics.bsky.social
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