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Comunidad de Desarrolladores de Software en Bioinformática

@cdsbmexico.bsky.social
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🇲🇽 #RMB node: Community of Bioinformatics Software Developers #rstats @Bioconductor.bsky.social #bioinformatics Admins @lcolladotor.bsky.social @areyesq.bsky.social @nnb_unam

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Renee García-Flores @freneegf.bsky.social · 16/09/2026
Day 1 of talks at posit::conf(2026) started with keynote speakers @sara-altman.bsky.social and @simonpcouch.com They talked about Posit’s efforts on building AI tools that are correct (trustworthy) while staying convenient (straightforward and intuitive). slides: pos.it/keynote #PositConf2026
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Renee García-Flores @freneegf.bsky.social · 14/09/2026
Woo! posit::conf(2026) started this morning, and I am super happy and grateful to be a Posit Opportunity Scholar this year! I am starting the week attending the Modern R Workflow Workshop taught by @jennybryan.bsky.social and @hadley.nz #PositConf2026
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Posit @posit.co · 16/06/2026
Organizing a community data science event or workshop? Posit wants to help! If you need event funding, awesome swag, social media signal boosts, or guest speakers/mentors, please reach out. Learn more: opensource.posit.co/about/commun...
opensource.posit.co
Community event and initiative support
Posit is committed to supporting the open-source community through conferences, community events, and educational initiatives. The wide adoption of open-source tools depends on the people who organize...
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Jorge Miranda Barrientos @jorge-miranda.bsky.social · 30/07/2026
I am so thrilled to share that i was selected to received the 2026 BBRF young investigator grant from the @bbrfoundation.bsky.social. This is meaningful for me. Thanks so much to @martinowk.bsky.social and the @lieberinstitute.bsky.social for all the support.
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Molly Schumer @mollyschumer.bsky.social · 08/05/2026
@gpreising.bsky.social is a long read rock star and is looking for postdocs or industry positions! bsky.app/profile/lcol...
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🇲🇽 Leonardo Collado-Torres @lcolladotor.bsky.social · 07/05/2026
Mike @mikeschatz.bsky.social paid tribute to James P. Taylor who was one of the main champions of #OpenScience @jxtxfoundation.bsky.social carries on. Mike introduced the winners of the scholarship to attend #BoG2026 this year (sponsored by @pacbio.bsky.social this yr) 👏🏽 @cshlmeetings.bsky.social
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🇲🇽 Leonardo Collado-Torres @lcolladotor.bsky.social · 07/05/2026
Did you miss #BoG2026 or want to share your work or want to keep learning about great computational biology? Mike @mikeschatz.bsky.social invites us to #BDS26 later this year in November Check bit.ly/cshl-biodata26 for all the details! @cshlmeetings.bsky.social
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🇲🇽 Leonardo Collado-Torres @lcolladotor.bsky.social · 06/05/2026
Gabriel @gpreising.bsky.social #LFW shared work involving INECOL & Centro de Investigaciones Científicas de las Huastecas Aguazarca 🇲🇽 They studied swordtail fishes & their alternative reproductive tactics using long read data Earlier work doi.org/10.1093/evol... #BoG2026 @cshlmeetings.bsky.social
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🇲🇽 Leonardo Collado-Torres @lcolladotor.bsky.social · 08/05/2026
En #BoG2026 hubo varixs mexicanxs 🇲🇽 o científicxs trabajando con datos de México🇲🇽 Me da gusto 😊 aprender de sus contribuciones a la ciencia. Esta vez hubo proyectos del Mexican Biobank doi.org/10.1038/s415... @cshlmeetings.bsky.social @valenomics.bsky.social Ana @xavierrocarada.bsky.social Irepan
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Jorge Miranda Barrientos @jorge-miranda.bsky.social · 24/04/2026
Yesterday I had the privilege to give a virtual talk to undergrad and graduate students in Mexico about some of our work at @lieberinstitute.bsky.social. It was great to connect with the community, and giving it in spanish felt so special. #cienciaenespañol!
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Posit @posit.co · 20/02/2026
Apply to be an Opportunity Scholar at posit::conf(2026) in Houston! We’re offering 40 full-support scholarships for underrepresented groups in data science. Includes: 🎟️ Conference+Workshop pass 🏨 Hotel stay ✈️ Travel reimbursement Apply by March 13: posit.co/blog/apply-t... #positconf2026 #rstats
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rOpenSci @handle.invalid · 20/02/2026
La página que contiene el formulario para aplicar al programa de campeonas/es está experimentando problemas. Extendemos el llamado hasta el lunes 23. Si el problema persiste buscaremos una alternativa. Gracias a todas las personas que nos avisaron y que quieren aplicar! 💜🙏 #RStats @rstats@a […]
hachyderm.io
Original post on hachyderm.io
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Marina Mendoza Suárez @marinamendoza.bsky.social · 20/02/2026
Discovered miRBaseConverter (Bioconductor) this week and thought it was cool 🙌 It translates miRNA names across miRBase versions and retrieves sequence info programmatically, making dataset integration smoother. Already saving me future headaches. Thanks to Taosheng Xu 👏
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🇲🇽 Leonardo Collado-Torres @lcolladotor.bsky.social · 20/02/2026
Talk submission video for Posit Conf 2026 #RStats «Organizing your data science team to be efficient, adaptive to new developments, and resilient to turnover rate» URLs: 1. lcolladotor.github.io/bioc_team_ds/ 2. research.libd.org/rstatsclub/ 3. github.com/LieberInstit... #OpenSource #Bioconductor
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Yani Bellini Saibene @yabellini.bsky.social · 20/02/2026
La página que contiene el formulario para aplicar al programa de campeonas/es está experimentando problemas. Extendemos el llamado hasta el lunes 23. Si el problema persiste buscaremos una alternativa. Gracias a todas las personas que nos avisaron y que quieren aplicar! 💜🙏
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Yani Bellini Saibene @yabellini.bsky.social · 20/02/2026
🚨 Último día 🚨 Hoy 20/2 cierra la convocatoria del Programa de Campeon(a|e)s 12 meses de mentoría, formación y comunidad en software científico y ciencia abierta, con foco en América Latina y en español. ⏰ Aplicá hoy 👉 champions-program.ropensci.org Sumate a la próxima cohorte 💙 #RStats
champions-program.ropensci.org
rOpenSci
Nuestro programa busca identificar, reconocer y premiar a las personas líderes en una comunidad de ciencia abierta, ingeniería de software de investigación y la comunidad de programación R.
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Zyanya Velazquez Aldrete @zyanya-ald.bsky.social · 12/02/2026
If you study microbiome Time series (gut, soil or mangroves -> like me) you want to know this... #miaTime (new on #Bioconductor3.22) gives you: 🟢 Divergence 🟢 Short-term change 🟢 Bimodality Thanks to the devs: @antagomir.bsky.social @tuomasborman.bsky.social #RStats #Microbiome #Bioconductor
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Gabriel Ramírez-Vilchis @gabrielramirezv.bsky.social · 13/02/2026
Today I had the opportunity to teach as a guest instructor in a bioinformatics course at #LCG-UNAM 👨🏻‍💻. We built academic websites with #postcards (thanks @seankross.com!), inspired by @hadley.nz and @jtleek.bsky.social. Thanks to Dr. @lcolladotor.bsky.social for the invitation! 🚀 #RStats
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Gabriel Ramírez-Vilchis @gabrielramirezv.bsky.social · 10/02/2026
Looking forward to contributing to a course session this week at #LCG-UNAM 👨🏻‍💻 Grateful for the opportunity to learn through teaching! 😊
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🇲🇽 Leonardo Collado-Torres @lcolladotor.bsky.social · 03/02/2026
lcolladotor.github.io/rnaseq_LCG-U... is looking ready for next week! We'll have the most guest presenters ever this year with @meli-mq99.bsky.social @gabrielramirezv.bsky.social @mariagtac.bsky.social & @daiannaglez.bsky.social 🙌🏽 See you soon at LCG-UNAM! 🇲🇽 #RStats @bioconductor.bsky.social
@lieberinstitute.bsky.social @jhubiostat.bsky.social
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Selene FeRNAndez @selfdz.bsky.social · 11/12/2025
Last Friday, Irving Jair García López became the latest PhD graduate of the #RegRNALab. His work focused on characterising lncRNAs in response to light stress in Arabidopsis 🌓🌱 and was jointly advised by Stewart Gillmor. Huge congratulations Dr García López!!! 🎉🎓
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Selene FeRNAndez @selfdz.bsky.social · 11/12/2025
The #RegRNALab is now LEAF certified! LEAF, is an internationally recognised green lab accreditation that aims to build a culture of sustainable practice in laboratories around the 🌎♻️ We are currently just 🥉 but we have our eyes on🥇! Props to Billi Ilkovski & the whole team for getting this done!
Framed LEAF certificate awarded to the RegRNALabWoman in lab using pipette Woman in lab using pipette
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hcastelan.bsky.social @hcastelan.bsky.social · 26/12/2025
I’m happy to share a preprint I contributed to, analyzing the evolutionary “fingerprints” of protein-coding genes in RNA viruses. Surface-exposed proteins from enveloped viruses show patterns consistent with relaxed purifying selection rather than adaptive evolution.
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Jazmín Ramos Madrigal @jazminrm.bsky.social · 06/01/2026
Are you working on ancient plant DNA? 🌿 We are organising a symposium on Ancient plant genomics at #SMBE2026 in beautiful Copenhagen 🇩🇰 Join Nathan Wales, Shuya Zhang, Marcela Sandoval Velasco, me, and our fantastic speaker Logan Kistler from the Smithsonian Institution. Help us spread the word!
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Federica Gazzelloni @fgazzelloni.bsky.social · 20/01/2026
I’ve just published {typeR}, a small R package that lets you simulate live typing. It prints code To install: devtools::install_github("fgazzelloni/typeR") If you teach or demo R, I’d love your feedback on how it works for you. #rstats #rpackages
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Eugenia Zarza @eugeniazarza.bsky.social · 21/01/2026
Buscamos personas interesad@s en estudiar la biodiversidad de eucariontes con métodos basados en DNA ambiental #eDNA. Consulta la convocatoria de maestría en ECOSUR (México): www.ecosur.mx/posgrado/con... Para más información contacta a Dra. Eugenia Zarza: eugenia.zarza@ecosur.mx 🧪🌎🧬🐟🐜🪲🪱🍄🐭
An AI generated image showing a frog, a butterfly, plants and a cartoonish DNA molecule, with text in spanish, advertising an opportunity to get a masters degree studying environmental DNA in Mexico
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Ana Hernández-Ledesma @annhled.bsky.social · 22/01/2026
So...a week ago I finally got my PhD (with honours 🥳). It has been a wild ride & I'm so happy to finish it with such great commentaries & congratulations. I'm beyond grateful for all that I've learnt so far & the people I've met. And overall I'm SO excited for what's next to come 💜
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Luis Bolaños @lbolanos68.bsky.social · 22/01/2026
New preprint led by Ellie Tong! Using phages targeting the inner core of LPS in PAO1, we found that when bacteria evolved resistance to one phage via genomic deletions, they became vulnerable to another revealing a resistance trade-off. #Microbiology #PhageTherapy www.biorxiv.org/content/10.6...
biorxiv.org
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hcastelan.bsky.social @hcastelan.bsky.social · 23/01/2026
New paper out! Gut microbiota in Mexican adolescents is shaped by BMI, diet, and socioeconomic status. Obesity was linked to lower microbial diversity and higher Bacteroidetes and sugar-rich diets, and lower SES were associated with potential pathogens. onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
Gut Microbiota Composition in Adolescents From Mexico City, Associations With Nutritional and Socioeconomic Factors: Results From a Pilot Study
This study analyzed the gut microbiota composition of 95 adolescents and its relationship with body mass index, dietary habits, and socioeconomic status using 16S rRNA sequencing (V3-V4). The dominan...
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🇲🇽 Leonardo Collado-Torres @lcolladotor.bsky.social · 27/01/2026
I re-edited this 2020 video using Adobe Premier Pro's features for removing filler words, pauses, and text-based editing. In total it went down from 20:53 min to 12:41. I hope that you get to (re-)enjoy it ^_^. @jennybryan.bsky.social #RStats #reprex #reproducibility #JHPCE youtu.be/LfUFxHFhXTE
youtu.be
[2020-04-03] How to ask for R help by creating a small reproducible example (edited on 2026-01-27)
YouTube video by Leonardo Collado Torres
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🇲🇽 Leonardo Collado-Torres @lcolladotor.bsky.social · 05/12/2025
[2025-10-16] What Makes a Good Data Visualization? Here's a teaser video of @christinezhang.bsky.social's guest lecture for the "140.776 Statistical Computing" 💻 course that I instructed this year at @johnshopkinssph.bsky.social Watch Christine's full guest lecture for free at youtu.be/SeLucCb05Dk
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Steven Salzberg @stevensalzberg.bsky.social · 16/01/2026
very sad news. Peer Bork was one of the leaders of our field, a wonderful scientist, and he's much too young to be gone. www.embl.org/news/embl-an...
embl.org
In remembrance of Peer Bork  | EMBL
EMBL and its community are deeply saddened by the death of Peer Bork, the organisation’s Interim Director General.
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Comunidad de Desarrolladores de Software en Bioinformática @cdsbmexico.bsky.social · 18/12/2025
Cynthia @cynthiasc.bsky.social pasó de alumna de un curso de la CDSB a trabajar con uno de nuestros co-fundadores por 3 años en EEUU. Ahora Cynthia está de regreso en México 🇲🇽 y disponible para dar cursos, colaborar, proyectos como consultora, y mucho más lcolladotor.github.io/es/authors/c...
lcolladotor.github.io
Cynthia S. Cardinault | L. Collado-Torres
R/Bioconductor-powered Team Data Science
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Nick Eagles @nick-eagles.bsky.social · 13/11/2025
Hot take: ggplot2 is better than any plotting option available in Python-- but I discuss a couple options in Python at an R Stats Club session @libdrstats.bsky.social linked below. I personally use plotnine, since it's essentially a port of ggplot2 for Python. youtu.be/xK9UNcOfjnI
youtu.be
[2025-07-18] Plots in Python with seaborn and plotnine
YouTube video by Leonardo Collado Torres
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Jorge Miranda Barrientos @jorge-miranda.bsky.social · 07/11/2025
Happy to share that our paper characterizing PrL dynamics during sustained attention is finally out. This work was a collaboration between the @martinowk.bsky.social and Greg Carr groups at @lieberinstitute.bsky.social . www.nature.com/articles/s41... #Calicumimaging #miniscopes #rCPT #PrL
nature.com
Patterns of neural activity in prelimbic cortex neurons correlate with attentional behavior in the rodent continuous performance test - Translational Psychiatry
Translational Psychiatry - Patterns of neural activity in prelimbic cortex neurons correlate with attentional behavior in the rodent continuous performance test
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🇲🇽 Leonardo Collado-Torres @lcolladotor.bsky.social · 07/11/2025
I just completed my first radio 📻 interview ^_^ You'll be able to listen to it next Friday or so at www.iheart.com/podcast/269-.... Thanks Clau from iHeartRadio Miami's "Estamos Contigo" podcast for reaching out! I'll be talking in Spanish about our recent #HabenulaLIBD 📜 bsky.app/profile/lcol...
Photo of Leonardo Collado Torres during a radio interview by Claudia Mendoza https://www.instagram.com/claudiamonair for iHeartRadio Miami's "Estamos Contigo" podcast. 

Leonardo works at LIBD https://bsky.app/profile/lieberinstitute.bsky.social and JHU Biostatistics https://bsky.app/profile/jhubiostat.bsky.social.
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Sur Herrera Paredes @surh.bsky.social · 05/11/2025
Para preparamos para los carteles Alberto Issac Aguilar Hernández de la UAEM nos plática de como diferenciar entre tipos de dinámicas determinists y estocásticas #RedMexBioMate
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🇲🇽 Leonardo Collado-Torres @lcolladotor.bsky.social · 05/11/2025
Acá va en español 🇲🇽 --- o --- "¡Estamos orgullosos de anunciar que nuestro artículo ‘Análisis Transcriptómico de la Habénula Humana en Esquizofrenia’ es el artículo de portada de la edición de noviembre del American Journal of Psychiatry!" 🧠 #HabenulaLIBD #snRNAseq #Habénula doi.org/10.1176/appi...
doi.org
Transcriptomic Analysis of the Human Habenula in Schizophrenia | American Journal of Psychiatry
Objective: The objective of this study was to define the molecular neuroanatomy of the human habenula (Hb) and identify transcriptomic differences between brains of individuals with schizophrenia and ...
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Renee García-Flores @freneegf.bsky.social · 05/11/2025
Excited to share that the second project from my time at @lieberinstitute.bsky.social with @lcolladotor.bsky.social is now published! This was such a rewarding collaboration to be part of. 💡🧠 Huge congrats to @lahuuki.bsky.social and all co-authors!
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Cynthia | Multiomics specialist | Founder of El Arkhe @cynthiasc.bsky.social · 05/05/2025
¡Hola! 👋 Avances en nuestra investigación sobre la habenula humana, clave en motivación y estrés. Usamos single-cell, epigenomics y spatial data para estudiarla. Presentado en el 2025 Epigenomics Sciences Symposium (JHU). 🧠✨ #SingleCell #Epigenomics #LIBD
Poster-Session-Epigenomics-Sciences-Cluster
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Daniela Robles-Espinoza @daniela-oaks.bsky.social · 08/05/2025
We have a new preprint out! Led by brilliant PhD student @estefvazquez.bsky.social. here we investigate through transcriptomics and proteomics the microenvironment of ulcerated #acral #melanoma 👇🏾
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Alejandra Medina-Rivera @alemedinarivera.bsky.social · 13/05/2025
Our New perspective explores breakthroughs & challenges in regulatory & systems genomics: from cis-regulatory code & 3D chromatin to spatial omics & AI models. 🔗 doi.org/10.1093/bioa... #Genomics #Bioinformatics #RegulatoryGenomics
doi.org
Perspective on recent developments and challenges in regulatory and systems genomics
Abstract. Predicting how genetic variation affects phenotypic outcomes at the organismal, cellular, and molecular levels requires deciphering the cis-regul
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Daniel Blanco-Melo @dbm003.bsky.social · 16/05/2025
HVTN 25th Anniversary: The journey to an HIV vaccine 💪🏼 Full movie of this incredible 25yr effort 👇🏼 www.helpendhiv.org/25-anniversa...
helpendhiv.org
25 Anniversary - HelpEndHIV
https://vimeo.com/1080978050
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Rodrigo Pérez Ortega @rpocisv.bsky.social · 16/05/2025
Massive DNA sequencing effort reveals how colonization shaped Brazil’s genetic diversity. My new story in @science.org. www.science.org/content/arti...
science.org
Massive DNA sequencing effort reveals how colonization shaped Brazil’s genetic diversity
New study identifies thousands of new variants related to diseases
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Selene FeRNAndez @selfdz.bsky.social · 23/05/2025
Today, I joined the @bioinfoedsummit.bsky.social, discussing: #Bioinformatics in 🇲🇽: Addressing Challenges in Education for Tomorrow’s Scientists 🔑 takeaways: focus on data integration + interpretation, strengthen local + international networks & create jobs outside of academia. 🙏 for the invite!
Zoom call of panelist for Bioinformatics Education Summit, discussing challenges in Bioinformatics Education in Mexico
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Louise Huuki-Myers @lahuuki.bsky.social · 11/04/2025
This paper was an exciting culmination of a lots of exploration with #deconvolution ! Check-out my blog post on this work for the TL;DR version: lahuuki.github.io/posts/2025-0...
lahuuki.github.io
Deconvolution Benchmark: TL;DR – Louise A. Huuki-Myers
A high level overview of the Deconvolution Benchmark project, now published in Genome Biology!
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Louise Huuki-Myers @lahuuki.bsky.social · 11/04/2025
We also propose and evaluate a new method for selecting cell type specific #markergenes for deconvolution: #MeanRatio implemented in #DeconvoBuddies @bioconductor.bsky.social #rstats 🛠️ research.libd.org/DeconvoBuddi...
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Louise Huuki-Myers @lahuuki.bsky.social · 11/04/2025
Hey #deconvolution fans! 👀 We’ve got an exciting new publication for you: a benchmark of 6 popular deconvolution methods on a multimodal human brain #DLPFC dataset 🧠🧬 Now out in Genome Biology: doi.org/10.1186/s130... @lieberinstitute.bsky.social @jhubiostat.bsky.social
doi.org
Benchmark of cellular deconvolution methods using a multi-assay dataset from postmortem human prefrontal cortex - Genome Biology
Cellular deconvolution of bulk RNA-sequencing data using single cell/nuclei RNA-seq reference data is an important strategy for estimating cell type composition in heterogeneous tissues, such as the h...
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EMBL-EBI Training @training.ebi.embl.org · 27/03/2025
If you’re looking to gain hands-on training in the basics of mass spectrometry and proteomics bioinformatics, then this course is for you! Make sure you’ve submitted your application by 6 April: www.ebi.ac.uk/training/eve... Some financial assistance is available - see the course website. 🧪🧶🧬🖥️
Course at EMBL-EBI
Proteomics bioinformatics
14 - 18 July 2025
Hinxton, United Kingdom
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Comunidad de Desarrolladores de Software en Bioinformática @cdsbmexico.bsky.social · 27/03/2025
¿Quieres que te paguen y te entrenen para desarrollar un paquete 📦 de #RStats por un año? ¿Quieres ser mentor? Manda tu solicitud antes del 30 de abril. Es para gente de Latino América ropensci.org/blog/2025/03...
ropensci.org
rOpenSci Champions Program 2025: In Spanish!
The call is open for a new cohort of our Champions Program with a focus on Latin America. Apply!
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