Reposted by Yi-Chia Huang 黃怡嘉Berta Verd @bertaverd.bsky.social · 21/04/2026New Pre-Print Alert! Evolving initial conditions: an alternative developmental route to morphological diversity with Shannon Taylor and @jamesehammond.bsky.social www.biorxiv.org/content/10.6... 613051
Reposted by Yi-Chia Huang 黃怡嘉Yen-Chung Chen 陳彥中 @ycchentw.bsky.social · 20/04/2026I am giving a talk this Tuesday at @Harvard Neural Development Club about how minimal memory of spatial patterning confers flexible neuronal fates, thanks to @yichiahuang.bsky.social for the invitation. Thrilled to meet folks in Boston. Food provided. Apr 21, 5:30 PM, Warren Alpert 236 121
Reposted by Yi-Chia Huang 黃怡嘉Joy Franco, PhD @engineeringjoy.bsky.social · 27/01/2026I don’t regret doing a postdoc in Boston but a little foresight into the weather when experiment planning MAY have saved me some trouble 🥶 Celebrating a successful day in lab thanks to my amazing labmates @cynthiamoncadareid.bsky.social @yichiahuang.bsky.social 🫶 #SequencingScienceSisters 141
Reposted by Yi-Chia Huang 黃怡嘉EPIGENETIC HULK @epigenetichulk.bsky.social · 09/09/2025🎵WHY DO ENHANCER! SUDDENLY APPEAR! EVERY TIME! THEY ARE NEAR!?! JUST LIKE ME! THEY LONG TO BE! CLOSE TO POLII! 🎵 www.nature.com/articles/s41...nature.comDistal enhancers loop to proximal enhancers, not to promoters - Nature Reviews Molecular Cell BiologyThis Comment posits that enhancers stimulate the transcription machinery only through short-range interactions and, therefore, that enhancer activity at a distance is mediated by chromatin loops betwe... 13612
Reposted by Yi-Chia Huang 黃怡嘉kuangtse.bsky.social @kuangtse.bsky.social · 17/04/2025🎓 After 5 years, the heart of my thesis is finally live! Pluripotent Stem Cell Plasticity is Sculpted by a Slit‑Independent Robo Pathway in a Regenerative Animal 🧬🧠 Read it here 👉https://www.biorxiv.org/content/10.1101/2025.04.14.648795v1 More details in the🧵👇biorxiv.orgPluripotent Stem Cell Plasticity is Sculpted by a Slit-Independent Robo Pathway in a Regenerative AnimalWhole-body regeneration requires adult stem cells with high plasticity to differentiate into missing cell types. Planarians possess a unique configuration of organs embedded in a vast pool of pluripot... 182
Reposted by Yi-Chia Huang 黃怡嘉Genes & Development @genesdev.bsky.social · 16/04/2025In this Review, Mätlik et al. discuss the influence of histone bivalency (activating H3K4me3 + repressive H3K27me3) on neuronal development and maturation. #openaccess Learn more here: ➡️ tinyurl.com/gd352306 094
Reposted by Yi-Chia Huang 黃怡嘉Carrie Adler @carrieadler.bsky.social · 17/04/2025👇👇👇 New preprint dropped! Where we dive deep into the factors that restrict pluripotent stem cells to make the RIGHT cell types in the RIGHT place in planarians. Many surprises in this very exciting story. @kuangtse.bsky.social 2197
Reposted by Yi-Chia Huang 黃怡嘉Dr. B. Duygu Özpolat (she/her) @biyolokum.bsky.social · 17/04/2025We made it to the cover! :) 117015
Reposted by Yi-Chia Huang 黃怡嘉Marine Biological Laboratory @mblscience.bsky.social · 14/03/2025Happy National Learn About Butterflies Day! 🦋 MBL Director Nipam Patel showed students from The Hockaday School and Wareham High School his collection this week! 📷: An emerald swallowtail butterfly. Credit: Nipam Patel 📷: Patel teaches Hockaday students. Credit: Alex Megerle 0255
Reposted by Yi-Chia Huang 黃怡嘉Stowers Institute @stowersinstitute.bsky.social · 03/03/2025In honor of #WorldHearingDay, explore the focus of the Piotrowski Lab – understanding the development & regeneration of the #zebrafish lateral line & the potential applications for promoting mammalian hair cell #regeneration to restore #hearingloss or #deafness.stowers.orgPiotrowski LabThe primary focus of our lab is understanding the development and regeneration of the zebrafish lateral line and the potential applications for promoting… 0123
Reposted by Yi-Chia Huang 黃怡嘉Lauren Kreeger @laurenkreeger.bsky.social · 11/01/2025Perfect way to start the new lab and the new year! Excited to talk about octopus cells with everyone 0195
Reposted by Yi-Chia Huang 黃怡嘉Seungsoo Kim @seungsookim.bsky.social · 20/01/2025Hello Bluesky friends! I am a #newPI starting at UC Irvine in April, interested in gene regulation and functional genomics in stem cell models of development (esp neural crest). We are hiring at all levels – please reach out/spread the word! sskimlab.orgsskimlab.orgKim Lab at UC IrvineVisit the post for more. 411552
Reposted by Yi-Chia Huang 黃怡嘉Gabby Palomo, PhD @gabspalomo.bsky.social · 26/12/2024Ok people. I’m drawing silhouettes this afternoon. If you have a paper coming up and you are in need of a #silhouette please let me know and I will have it ready today. As always I upload all my silhouettes to phylopic.org I also have tutorials on how to put a silhouette in a plot in R.phylopic.orgPhyloPicPhyloPic is an open database of free silhouette images of animals, plants, and other life forms, available for reuse under Creative Commons licenses. Download silhouettes for use in educational materi... 17444157
Reposted by Yi-Chia Huang 黃怡嘉Development @dev-journal.bsky.social · 30/12/2024To mark the 40th year since the homeobox discovery, we've commissioned a series of articles from leaders in the field demonstrating the impact of the discovery on different disciplines. Check out the full collection: journals.biologists.com/dev/collect… 07536
Reposted by Yi-Chia Huang 黃怡嘉Wolfgang Huber @wkhuber.bsky.social · 03/01/2025How to do differential expression with scRNAseq data? State of the art is "pseudo-bulk" analysis with RNA-seq methods like edgeR or DESeq2, where "cell type" is encoded as discrete categories. Biologically, discrete categories are not always the most appropriate concept.(1/3) doi.org/10.1038/s415...doi.orgAnalysis of multi-condition single-cell data with latent embedding multivariate regression - Nature GeneticsLatent embedding multivariate regression models multi-condition single-cell RNA-seq using a continuous latent space, enabling data integration, per-cell gene expression prediction and clustering-free ... 724793
Reposted by Yi-Chia Huang 黃怡嘉eLife @elife.bsky.social · 19/12/2024Change is rarely easy, but the right changes are worth it. As the year comes to a close, we’re showcasing some research and publishing highlights from the year with the hashtag #12DaysOfeLife Follow along over the next 12 days or check out our blog now! buff.ly/3Dhn21zbuff.lyA look back at 2024We take a look back at some of the key milestones and announcements of 2024. 0173
Reposted by Yi-Chia Huang 黃怡嘉James Briscoe @jamesbriscoe.bsky.social · 19/12/2024Our latest: how to generate the notochord "Timely TGFβ signalling inhibition induces notochord" A thread: www.nature.com/articles/s41...nature.comTimely TGFβ signalling inhibition induces notochord - NatureThrough analysis of developing chick embryos and in vitro differentiation of embryonic stem cells, a study develops a method to generate a model of the human trunk with a notochord. 724467
Reposted by Yi-Chia Huang 黃怡嘉Kalki Kukreja @kkukreja.bsky.social · 12/12/2024My first post on bluesky!! Excited to see my PhD work featured on the cover of NCB @naturecellbiology.bsky.social December issue! This image shows a gorgeous #zebrafish embryo undergoing cell division (the green cells with condensed chromatin)—a fundamental process we study in development. 🧵1/2 2306
Reposted by Yi-Chia Huang 黃怡嘉Nick Desnoyer @nickdesnoyer.bsky.social · 12/12/2024In one year, I genetically engineered the boring Arabidopsis into a beautiful ornamental flower 🧬🌹 Here is how and why I gave this model organism a visual upgrade 🧵(1/7) 22474181
Reposted by Yi-Chia Huang 黃怡嘉Tomàs Montserrat Ayuso @tmontsay.bsky.social · 03/12/2024 Not checking nuclear markers like MALAT1 or intronic reads in your scRNA-seq data?🚨 We show their power to flag low-quality cells—even in top public datasets. It’s time to prioritize better QC for cleaner, more reliable genomics research! Read more: bmcgenomics.biomedcentral.com/articles/10.... 1/8bmcgenomics.biomedcentral.comHigh content of nuclei-free low-quality cells in reference single-cell atlases: a call for more stringent quality control using nuclear fraction - BMC GenomicsThe advent of droplet-based single-cell RNA-sequencing (scRNA-seq) has dramatically increased data throughput, enabling the release of a diverse array of tissue cell atlases to the public. However, we... 4244126
Reposted by Yi-Chia Huang 黃怡嘉Igor Adameyko @adameykolab.bsky.social · 01/12/2024We are interested in all aspects globally connecting the neural crest to evolution, biomedicine and specific sub-field of developmental biology. In this study we show the role of motor circuits in shaping neural crest-derived sympathetic nervous system: www.nature.com/articles/s41...nature.comMotor innervation directs the correct development of the mouse sympathetic nervous system - Nature CommunicationsHow tissues interact to help each other grow is a major question for biologists. Here, the authors show that motor innervation controls positioning of sympathetic progenitor cells to ensure correct sh... 03312
Reposted by Yi-Chia Huang 黃怡嘉bioRxiv Genomics @biorxiv-genomic.bsky.social · 02/12/2024Identification and developmental profiling of microRNAs in the acoel worm Hofstenia miamia www.biorxiv.org/content/10.1101/202… biorxiv.orgIdentification and developmental profiling of microRNAs in the acoel worm Hofstenia miamia https://www.biorxiv.org/content/10.1101/2024.12.01.626237v1 The acoel worm Hofstenia miamia (H. miamia) has recently emerged as a model organism for studying wh 042
Reposted by Yi-Chia Huang 黃怡嘉John Wallingford @jbwallingford.bsky.social · 02/12/2024Welcome to the #devbiolwriteclub Bluesky Boot Camp! I’ll be posting here regularly with thoughts and exercises to help scientists become better writers. Let’s start by managing expectations: I will NOT help you write better. I WILL help you become a better writer. 🧵 1/10 38640
Reposted by Yi-Chia Huang 黃怡嘉Mitch Guttman @mitchguttman.bsky.social · 27/11/2024Gene regulation involves thousands of proteins that bind DNA, yet comprehensively mapping these is challenging. Our paper in Nature Genetics describes ChIP-DIP, a method for genome-wide mapping of hundreds of DNA-protein interactions in a single experiment. www.nature.com/articles/s41...nature.comChIP-DIP maps binding of hundreds of proteins to DNA simultaneously and identifies diverse gene regulatory elements - Nature GeneticsChIP-DIP (ChIP done in parallel) is a highly multiplex assay for protein–DNA binding, scalable to hundreds of proteins including modified histones, chromatin regulators and transcription factors, offe... 9382150
Reposted by Yi-Chia Huang 黃怡嘉Kim Cooper @ucsdcooperlab.bsky.social · 21/11/2024Excited to share work that @ceriweber.bsky.social started and drove in my lab. Tails!! We know a lot about limb bone growth, but vertebrae have completely different embryonic and evolutionary origins. What controls growth and proportion in the vertebral skeleton? www.biorxiv.org/content/10.1...biorxiv.orgCellular and molecular mechanisms that shape the development and evolution of tail vertebral proportion in mice and jerboasDespite the functional importance of the vertebral skeleton, little is known about how individual vertebrae elongate or achieve disproportionate lengths as in the giraffe neck. Rodent tails are an abu... 05721
Reposted by Yi-Chia Huang 黃怡嘉Dr. B. Duygu Özpolat (she/her) @biyolokum.bsky.social · 21/11/2024"It's a worm's world" a lovely article by Maddy Frank about our lab's work! biology.wustl.edu/news/its-wor...biology.wustl.eduIt's a worm's world: regeneration and regrowth in the Özpolat LabInside a corner lab in the basement of Busch, thousands of worms lay in wait. The windowless room stays at a cool 18 degrees Celsius. Small plastic containers (think the ones you might have put some c... 37414
Reposted by Yi-Chia Huang 黃怡嘉Axel Visel @axelvisel.bsky.social · 27/05/2024REX - a mammalian "range extender" element that can turn short-distance enhancers into long-distance enhancers. New preprint from a collaboration led by Grace Bower and Evgeny Kvon. doi.org/10.1101/2024... 25421
Reposted by Yi-Chia Huang 黃怡嘉Kim Cooper @ucsdcooperlab.bsky.social · 19/11/2024Please read and share this ⬇️ journals.biologists.com/dev/article/...journals.biologists.comThe case against simplistic genetic explanations of evolutionSummary: Extreme traits in animals, from the origin of limbs to the loss of tails, capture public attention. This Review argues that scientists should not seek simple explanations for how they evolved... 46231
Reposted by Yi-Chia Huang 黃怡嘉bioRxiv Developmental Biology @biorxiv-devbio.bsky.social · 17/11/2024Unbiased profiling of multipotency landscapes reveals spatial modulators of clonal fate biases www.biorxiv.org/content/10.1101/202… biorxiv.orgUnbiased profiling of multipotency landscapes reveals spatial modulators of clonal fate biases https://www.biorxiv.org/content/10.1101/2024.11.15.623687v1 Embryogenesis is commonly viewed through a tree model of cell differentiation, which does not adequa 033
Reposted by Yi-Chia Huang 黃怡嘉闵娅(Min Ya; Minya) PhD @minyaaa.bsky.social · 16/11/2024*Highly recommend* a simple plug in called Color Oracle: colororacle.org It’s a free color blindness simulator. Just one click, it shows you in real time what people with common color vision impairments will see on your screen. I use it to doublecheck everything! #microscopy #figures #academicskycolororacle.orgColor Oracle | Color Oracle 57838