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Yi-Chia Huang 黃怡嘉

@yichiahuang.bsky.social
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Reposted by Yi-Chia Huang 黃怡嘉
Berta Verd @bertaverd.bsky.social · 21/04/2026
New Pre-Print Alert! Evolving initial conditions: an alternative developmental route to morphological diversity with Shannon Taylor and @jamesehammond.bsky.social www.biorxiv.org/content/10.6...
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Yen-Chung Chen 陳彥中 @ycchentw.bsky.social · 20/04/2026
I am giving a talk this Tuesday at @Harvard Neural Development Club about how minimal memory of spatial patterning confers flexible neuronal fates, thanks to @yichiahuang.bsky.social for the invitation. Thrilled to meet folks in Boston. Food provided. Apr 21, 5:30 PM, Warren Alpert 236
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Joy Franco, PhD @engineeringjoy.bsky.social · 27/01/2026
I don’t regret doing a postdoc in Boston but a little foresight into the weather when experiment planning MAY have saved me some trouble 🥶 Celebrating a successful day in lab thanks to my amazing labmates @cynthiamoncadareid.bsky.social @yichiahuang.bsky.social 🫶 #SequencingScienceSisters
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EPIGENETIC HULK @epigenetichulk.bsky.social · 09/09/2025
🎵WHY DO ENHANCER! SUDDENLY APPEAR! EVERY TIME! THEY ARE NEAR!?! JUST LIKE ME! THEY LONG TO BE! CLOSE TO POLII! 🎵 www.nature.com/articles/s41...
nature.com
Distal enhancers loop to proximal enhancers, not to promoters - Nature Reviews Molecular Cell Biology
This Comment posits that enhancers stimulate the transcription machinery only through short-range interactions and, therefore, that enhancer activity at a distance is mediated by chromatin loops betwe...
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kuangtse.bsky.social @kuangtse.bsky.social · 17/04/2025
🎓 After 5 years, the heart of my thesis is finally live! Pluripotent Stem Cell Plasticity is Sculpted by a Slit‑Independent Robo Pathway in a Regenerative Animal 🧬🧠 Read it here 👉https://www.biorxiv.org/content/10.1101/2025.04.14.648795v1 More details in the🧵👇
biorxiv.org
Pluripotent Stem Cell Plasticity is Sculpted by a Slit-Independent Robo Pathway in a Regenerative Animal
Whole-body regeneration requires adult stem cells with high plasticity to differentiate into missing cell types. Planarians possess a unique configuration of organs embedded in a vast pool of pluripot...
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Genes & Development @genesdev.bsky.social · 16/04/2025
In this Review, Mätlik et al. discuss the influence of histone bivalency (activating H3K4me3 + repressive H3K27me3) on neuronal development and maturation. #openaccess Learn more here: ➡️ tinyurl.com/gd352306
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Reposted by Yi-Chia Huang 黃怡嘉
Carrie Adler @carrieadler.bsky.social · 17/04/2025
👇👇👇 New preprint dropped! Where we dive deep into the factors that restrict pluripotent stem cells to make the RIGHT cell types in the RIGHT place in planarians. Many surprises in this very exciting story. @kuangtse.bsky.social
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Dr. B. Duygu Özpolat (she/her) @biyolokum.bsky.social · 17/04/2025
We made it to the cover! :)
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Marine Biological Laboratory @mblscience.bsky.social · 14/03/2025
Happy National Learn About Butterflies Day! 🦋 MBL Director Nipam Patel showed students from The Hockaday School and Wareham High School his collection this week! 📷: An emerald swallowtail butterfly. Credit: Nipam Patel 📷: Patel teaches Hockaday students. Credit: Alex Megerle
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Stowers Institute @stowersinstitute.bsky.social · 03/03/2025
In honor of #WorldHearingDay, explore the focus of the Piotrowski Lab – understanding the development & regeneration of the #zebrafish lateral line & the potential applications for promoting mammalian hair cell #regeneration to restore #hearingloss or #deafness.
stowers.org
Piotrowski Lab
The primary focus of our lab is understanding the development and regeneration of the zebrafish lateral line and the potential applications for promoting…
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Reposted by Yi-Chia Huang 黃怡嘉
Lauren Kreeger @laurenkreeger.bsky.social · 11/01/2025
Perfect way to start the new lab and the new year! Excited to talk about octopus cells with everyone
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Seungsoo Kim @seungsookim.bsky.social · 20/01/2025
Hello Bluesky friends! I am a #newPI starting at UC Irvine in April, interested in gene regulation and functional genomics in stem cell models of development (esp neural crest). We are hiring at all levels – please reach out/spread the word! sskimlab.org
sskimlab.org
Kim Lab at UC Irvine
Visit the post for more.
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Gabby Palomo, PhD @gabspalomo.bsky.social · 26/12/2024
Ok people. I’m drawing silhouettes this afternoon. If you have a paper coming up and you are in need of a #silhouette please let me know and I will have it ready today. As always I upload all my silhouettes to phylopic.org I also have tutorials on how to put a silhouette in a plot in R.
phylopic.org
PhyloPic
PhyloPic is an open database of free silhouette images of animals, plants, and other life forms, available for reuse under Creative Commons licenses. Download silhouettes for use in educational materi...
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Reposted by Yi-Chia Huang 黃怡嘉
Development @dev-journal.bsky.social · 30/12/2024
To mark the 40th year since the homeobox discovery, we've commissioned a series of articles from leaders in the field demonstrating the impact of the discovery on different disciplines. Check out the full collection: journals.biologists.com/dev/collect…
40 years of the homeobox
A large family of developmental genes share a 180 bp DNA sequence, called the homeobox, which encodes a DNA-binding domain. This year, 2024, marks the 40th year since the discovery of the homeobox in 1984, a landmark that fundamentally impacted several fields including genetics, developmental biology, neuroscience and evolution.

To celebrate this anniversary, Development has commissioned a series of articles from leaders in the field demonstrating the impact of the homeobox discovery on different disciplines. These review-type articles will be published throughout 2024, starting with an introductory Editorial and collated here. We hope you find these articles interesting and we welcome your future submissions detailing how this remarkable family functions in development, stem cells and regeneration.
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Reposted by Yi-Chia Huang 黃怡嘉
Wolfgang Huber @wkhuber.bsky.social · 03/01/2025
How to do differential expression with scRNAseq data? State of the art is "pseudo-bulk" analysis with RNA-seq methods like edgeR or DESeq2, where "cell type" is encoded as discrete categories. Biologically, discrete categories are not always the most appropriate concept.(1/3) doi.org/10.1038/s415...
doi.org
Analysis of multi-condition single-cell data with latent embedding multivariate regression - Nature Genetics
Latent embedding multivariate regression models multi-condition single-cell RNA-seq using a continuous latent space, enabling data integration, per-cell gene expression prediction and clustering-free ...
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eLife @elife.bsky.social · 19/12/2024
Change is rarely easy, but the right changes are worth it. As the year comes to a close, we’re showcasing some research and publishing highlights from the year with the hashtag #12DaysOfeLife Follow along over the next 12 days or check out our blog now! buff.ly/3Dhn21z
buff.ly
A look back at 2024
We take a look back at some of the key milestones and announcements of 2024.
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Reposted by Yi-Chia Huang 黃怡嘉
James Briscoe @jamesbriscoe.bsky.social · 19/12/2024
Our latest: how to generate the notochord "Timely TGFβ signalling inhibition induces notochord" A thread: www.nature.com/articles/s41...
nature.com
Timely TGFβ signalling inhibition induces notochord - Nature
Through analysis of developing chick embryos and in vitro differentiation of embryonic stem cells, a study develops a method to generate a model of the human trunk with a notochord.
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Kalki Kukreja @kkukreja.bsky.social · 12/12/2024
My first post on bluesky!! Excited to see my PhD work featured on the cover of NCB @naturecellbiology.bsky.social December issue! This image shows a gorgeous #zebrafish embryo undergoing cell division (the green cells with condensed chromatin)—a fundamental process we study in development. 🧵1/2
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Nick Desnoyer @nickdesnoyer.bsky.social · 12/12/2024
In one year, I genetically engineered the boring Arabidopsis into a beautiful ornamental flower 🧬🌹 Here is how and why I gave this model organism a visual upgrade 🧵(1/7)
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Tomàs Montserrat Ayuso @tmontsay.bsky.social · 03/12/2024
Not checking nuclear markers like MALAT1 or intronic reads in your scRNA-seq data?🚨 We show their power to flag low-quality cells—even in top public datasets. It’s time to prioritize better QC for cleaner, more reliable genomics research! Read more: bmcgenomics.biomedcentral.com/articles/10.... 1/8
bmcgenomics.biomedcentral.com
High content of nuclei-free low-quality cells in reference single-cell atlases: a call for more stringent quality control using nuclear fraction - BMC Genomics
The advent of droplet-based single-cell RNA-sequencing (scRNA-seq) has dramatically increased data throughput, enabling the release of a diverse array of tissue cell atlases to the public. However, we...
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Igor Adameyko @adameykolab.bsky.social · 01/12/2024
We are interested in all aspects globally connecting the neural crest to evolution, biomedicine and specific sub-field of developmental biology. In this study we show the role of motor circuits in shaping neural crest-derived sympathetic nervous system: www.nature.com/articles/s41...
nature.com
Motor innervation directs the correct development of the mouse sympathetic nervous system - Nature Communications
How tissues interact to help each other grow is a major question for biologists. Here, the authors show that motor innervation controls positioning of sympathetic progenitor cells to ensure correct sh...
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Reposted by Yi-Chia Huang 黃怡嘉
bioRxiv Genomics @biorxiv-genomic.bsky.social · 02/12/2024
Identification and developmental profiling of microRNAs in the acoel worm Hofstenia miamia www.biorxiv.org/content/10.1101/202…
biorxiv.org
Identification and developmental profiling of microRNAs in the acoel worm Hofstenia miamia https://www.biorxiv.org/content/10.1101/2024.12.01.626237v1
The acoel worm Hofstenia miamia (H. miamia) has recently emerged as a model organism for studying wh
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Reposted by Yi-Chia Huang 黃怡嘉
John Wallingford @jbwallingford.bsky.social · 02/12/2024
Welcome to the #devbiolwriteclub Bluesky Boot Camp! I’ll be posting here regularly with thoughts and exercises to help scientists become better writers. Let’s start by managing expectations: I will NOT help you write better. I WILL help you become a better writer. 🧵 1/10
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Mitch Guttman @mitchguttman.bsky.social · 27/11/2024
Gene regulation involves thousands of proteins that bind DNA, yet comprehensively mapping these is challenging. Our paper in Nature Genetics describes ChIP-DIP, a method for genome-wide mapping of hundreds of DNA-protein interactions in a single experiment. www.nature.com/articles/s41...
nature.com
ChIP-DIP maps binding of hundreds of proteins to DNA simultaneously and identifies diverse gene regulatory elements - Nature Genetics
ChIP-DIP (ChIP done in parallel) is a highly multiplex assay for protein–DNA binding, scalable to hundreds of proteins including modified histones, chromatin regulators and transcription factors, offe...
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Kim Cooper @ucsdcooperlab.bsky.social · 21/11/2024
Excited to share work that @ceriweber.bsky.social started and drove in my lab. Tails!! We know a lot about limb bone growth, but vertebrae have completely different embryonic and evolutionary origins. What controls growth and proportion in the vertebral skeleton? www.biorxiv.org/content/10.1...
biorxiv.org
Cellular and molecular mechanisms that shape the development and evolution of tail vertebral proportion in mice and jerboas
Despite the functional importance of the vertebral skeleton, little is known about how individual vertebrae elongate or achieve disproportionate lengths as in the giraffe neck. Rodent tails are an abu...
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Reposted by Yi-Chia Huang 黃怡嘉
Dr. B. Duygu Özpolat (she/her) @biyolokum.bsky.social · 21/11/2024
"It's a worm's world" a lovely article by Maddy Frank about our lab's work! biology.wustl.edu/news/its-wor...
biology.wustl.edu
It's a worm's world: regeneration and regrowth in the Özpolat Lab
Inside a corner lab in the basement of Busch, thousands of worms lay in wait. The windowless room stays at a cool 18 degrees Celsius. Small plastic containers (think the ones you might have put some c...
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Reposted by Yi-Chia Huang 黃怡嘉
Axel Visel @axelvisel.bsky.social · 27/05/2024
REX - a mammalian "range extender" element that can turn short-distance enhancers into long-distance enhancers. New preprint from a collaboration led by Grace Bower and Evgeny Kvon. doi.org/10.1101/2024...
Schematic overview of the proposed mode of action of the newly discovered REX element. Top: An enhancer can activate a gene at a short distance, but not at at long range. Middle: Presence of (C/T)AATTA motifs within an enhancer enable it to act over long distances. Bottom: Coupling a short-range enhancer to the REX element containing the same motifs turns it into a long-range enhancer.
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Kim Cooper @ucsdcooperlab.bsky.social · 19/11/2024
Please read and share this ⬇️ journals.biologists.com/dev/article/...
journals.biologists.com
The case against simplistic genetic explanations of evolution
Summary: Extreme traits in animals, from the origin of limbs to the loss of tails, capture public attention. This Review argues that scientists should not seek simple explanations for how they evolved...
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bioRxiv Developmental Biology @biorxiv-devbio.bsky.social · 17/11/2024
Unbiased profiling of multipotency landscapes reveals spatial modulators of clonal fate biases www.biorxiv.org/content/10.1101/202…
biorxiv.org
Unbiased profiling of multipotency landscapes reveals spatial modulators of clonal fate biases https://www.biorxiv.org/content/10.1101/2024.11.15.623687v1
Embryogenesis is commonly viewed through a tree model of cell differentiation, which does not adequa
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Reposted by Yi-Chia Huang 黃怡嘉
闵娅(Min Ya; Minya) PhD @minyaaa.bsky.social · 16/11/2024
*Highly recommend* a simple plug in called Color Oracle: colororacle.org It’s a free color blindness simulator. Just one click, it shows you in real time what people with common color vision impairments will see on your screen. I use it to doublecheck everything! #microscopy #figures #academicsky
colororacle.org
Color Oracle | Color Oracle
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