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Vince Arafiles

@vincearafiles.bsky.social
60 followers 193 following 24 posts

#AsstProf at @KyotoUniversity #Postdoc at The Hackenberger Group @fmp-berlin.de @AvHStiftung| PhD Futaki Lab #KyotoUniversity| @lindaunobel #LINO22 #drugdelivery #microscopy #photoproximitylabeling #pinoyscientists 🇵🇭

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Reposted by Vince Arafiles
Journal of the American Chemical Society (JACS) @jacs.acspublications.org · 21/08/2026
"Chemical Synthesis of Mirror-Image Proteins Reveals Chirality-Dependent Cellular Uptake Mediated by a Cell-Penetrating Peptide" has made it onto the cover of this week's #JACS! Explore the science behind the artwork: buff.ly/ZIlL4Mm
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Vince Arafiles @vincearafiles.bsky.social · 14/08/2026
How can #chemistry help us deliver proteins into cells? 🤔Excited to share our new @acs.org article in Chemical Reviews 🎉 Protein Modifications for Cellular Protein Delivery pubs.acs.org/chreay/artic...
pubs.acs.org
Protein Modifications for Cellular Protein Delivery
Abstract. Intracellular delivery of functional proteins is emerging as a powerful strategy to interrogate and control cellular pathways with high spatial a
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Vince Arafiles @vincearafiles.bsky.social · 11/02/2026
Happy to contribute to a great work from my colleague and friend @cestieger.bsky.social @fmp-berlin.de @jacs.acspublications.org Modular Vinyl Phosphonamidates for Cysteine-Directed Protein Targeting | Journal of the American Chemical Society pubs.acs.org/doi/10.1021/...
pubs.acs.org
Modular Vinyl Phosphonamidates for Cysteine-Directed Protein Targeting
Covalent inhibitors and chemical probes targeting ligandable cysteine residues have emerged as powerful tools for drug discovery and proteomics. In this study, we introduce vinyl phosphonamidates (VPA...
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Vince Arafiles @vincearafiles.bsky.social · 03/02/2026
A great article to remind oneself that academia's purpose is to satisfy personal egos but to encourage and bring the best out of the next generation while balancing the pressure to perform 👨🏾‍🏫👨🏾‍🔬
science.org
I needed a culture shift in my lab. I’m grateful one student spoke up
“I was transferring the stress I was under onto my graduate students,” this professor writes
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Reposted by Vince Arafiles
Kai Johnsson @kjohnsson.bsky.social · 31/12/2025
A good end to 2025: rhodamine-binders for bioimaging in JACS: pubs.acs.org/doi/10.1021/...
pubs.acs.org
Fast, Bright, and Reversible Fluorescent Labeling of Rhodamine-Binding Proteins
Rhodamine dyes conjugated to targeting ligands can yield exceptionally bright fluorescent probes for live-cell imaging. However, the limited permeability of such rhodamine derivatives restricts their ...
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Vince Arafiles @vincearafiles.bsky.social · 01/01/2026
“This is the beauty of global-south scholars: they are the connectors of the two worlds,” resonates with our decision so much, while never allowing the global north underestimate the potential and capacity of the global south
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Reposted by Vince Arafiles
Science News @scinews.bsky.social · 21/12/2025
Exceptional young performers reached their peak quickly but narrowly mastered only one interest. By contrast, exceptional adults reached peak performance gradually with broader, multidisciplinary practice. However, elite programs are designed to nurture younger talent.
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Reposted by Vince Arafiles
Shinya Tsukiji @shinyatsukiji.bsky.social · 16/12/2025
One more paper from our lab! This ACS Synthetic Biology paper reports bottom-up construction of eukaryotic-like synthetic cells with an artificial nucleus-like organelle, enabling on-demand protein localization control by a small molecule. 💊 pubs.acs.org/doi/full/10....
pubs.acs.org
Eukaryotic-like Synthetic Cells with Chemically Controlled Protein Localization
Compartmentalization by organelles and the dynamic control of protein localization within these compartmentalized spaces are key mechanisms for regulating biological processes in eukaryotic cells. Here, we present a bottom-up approach for constructing cell-sized liposomes (giant unilamellar vesicles, GUVs) encapsulating an artificial organelle with chemically controlled protein localization. In this system, proteins fused to Escherichia coli dihydrofolate reductase are rapidly recruited on demand from the inner solution to the interior of a DNA-droplet-based (“nucleus”-like) organelle within GUVs upon addition of a synthetic, DNA-binding trimethoprim derivative to the external solution. By coupling this system with a sequence-specific protease, we constructed a synthetic cell platform that enables chemically induced, multistep cascade reactions─including protein relocalization, organelle-specific enzymatic activity, and product release from the organelle─that culminate in the control of synthetic-cell phenotypes, such as pore formation in the GUV membrane. This work provides a versatile platform for the bottom-up creation of eukaryotic-like synthetic cells with sophisticated and programmable functions.
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Vince Arafiles @vincearafiles.bsky.social · 14/11/2025
Lovely summary of our 🎯 DarT-labelling technology! We are hoping to see this applied to a more basic cell biology and biochem applicationsn link to the original @natureportfolio.nature.com @natchem.nature.com article: www.nature.com/articles/s41...
nature.com
Energy-transfer photoproximity labelling in live cells using an organic cofactor - Nature Chemistry
Current photoproximity labelling methods often require metal-based catalysts to map protein interactomes but, owing to their toxicity, they have limited intracellular applicability. A deazaflavin cofa...
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Reposted by Vince Arafiles
Kathrin Lang @klanglab.bsky.social · 16/10/2025
🚨Our paper is out! 🥳 Hijacking a bacterial ABC transporter for efficient genetic code expansion. Many congrats to everyone involved - a multi-year effort led by @taruniype.bsky.social @maxfottner.bsky.social www.nature.com/articles/s41... it all started years ago with a failed experiment 🧵👇 1/9
nature.com
Hijacking a bacterial ABC transporter for genetic code expansion - Nature
Bacterial ATP-binding cassette (ABC) transporters can be utilized and engineered to transport non-canonical amino acids into Escherichia coli for highly efficient synthesis of proteins with novel func...
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Vince Arafiles @vincearafiles.bsky.social · 17/09/2025
🔥After years of hard work, it's finally out in @natchem.nature.com🔥 The Hackenberger group @fmp-berlin.de developed #🎯DarT-labeling, a #photocatalyticproximitylabeling method using deazaflavin - a ✅ biocompatible ✅ easily synthesized ✅ chemically benign #photocatalyst www.nature.com/articles/s41...
nature.com
Energy-transfer photoproximity labelling in live cells using an organic cofactor - Nature Chemistry
Current photoproximity labelling methods often require metal-based catalysts to map protein interactomes but, owing to their toxicity, they have limited intracellular applicability. A deazaflavin cofa...
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Reposted by Vince Arafiles
Sigrid Milles @millessigrid.bsky.social · 21/08/2025
I am happy to share our new article on dynamic Eps15 and Dab2 networks in endocytosis studied by #NMR, and forming #LLPS. Research was done at @fmp-berlin.de and at the Institut de Biologie Structurale (IBS). www.nature.com/articles/s41...
nature.com
Promiscuous and multivalent interactions between Eps15 and partner protein Dab2 generate a complex interaction network - Nature Communications
Eps15, a protein involved in endocytosis initiation, uses small folded EH domains to bind disordered partner proteins and its own disordered tail, thus forming a dynamic network via phase separation t...
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Reposted by Vince Arafiles
Wennemers Group @wennemersgroup.bsky.social · 19/08/2025
New from our group: proline-rich peptides that target mitochondria & stay there! Tuning hydrophobicity and rigidity provided design rules for CPPs that enter cells and redistribute for long-term mitochondrial residency. Now out in ACS Chemical Biology: pubs.acs.org/doi/10.1021/...
lnkd.in
LinkedIn
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Vince Arafiles @vincearafiles.bsky.social · 25/07/2025
Another beautiful cover image by @barthvanrossum.bsky.social highlighting both our recent BioRAM intracellular delivery platform together and the CPP-additive technology is now an Outside Back Cover in @angewandtechemie.bsky.social ! @fmp-berlin.de onlinelibrary.wiley.com/doi/10.1002/...
BioRAM platform together with the CPP-additive technology allows the direct translocation of native proteins into cells! An easy, biocompatible, and efficient innovation for intracellular delivery of proteins
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Vince Arafiles @vincearafiles.bsky.social · 10/07/2025
#BioRAM is the new #celldelivery platform in town! Everyone can now access the full version of this game-changing work from Jonathan Franke! Ecstatic to share my experience in #peptide - based #proteindelivery #intracellulardelivery @fmp-berlin.de @humboldt-foundation.de doi.org/10.1002/anie...
doi.org
Intracellular Delivery of Native Proteins by BioReversible Arginine Modification (BioRAM) on Amino Groups
Bioreversible Arginine Modification of amine-containing protein residues (termed BioRAM) allows the serum-compatible, readily accessible, and efficient delivery of native proteins into live cells. Co....
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Vince Arafiles @vincearafiles.bsky.social · 09/07/2025
Sent! It's done! Can't wait to see our work in print 😌 #photoproximity #proteomics #cellpenetratingpeptides
media.tenor.com
a close up of a man 's face with the words `` it 's done '' written on the bottom .
ALT: a close up of a man 's face with the words `` it 's done '' written on the bottom .
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Reposted by Vince Arafiles
Nature Chemical Biology @natchembio.nature.com · 08/07/2025
Also check out the associated News & Views by Masayasu Taki and Masayoshi Nakamura highlighting the work from @kjohnsson.bsky.social lab on SNAP-tag2 www.nature.com/articles/s41...
nature.com
SNAP-Tech 2.0 - Nature Chemical Biology
Self-labeling protein tags (SLPs) have revolutionized bioimaging by enabling precise protein tracking. A next-generation SLP, SNAP-tag2, has now been developed with improved labeling kinetics, fluores...
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Vince Arafiles @vincearafiles.bsky.social · 03/07/2025
Beautiful work by the @matilegroup.bsky.social! I'm following their thiol-mediated uptake stories and feel happy that #photocatalyticproximitylabeling is opening new doors to discover the mechanism of this fascinating cellular entry mechanism! #drugdelivery #cellularuptake
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Reposted by Vince Arafiles
Mark de Geus @mardegeus.bsky.social · 10/06/2025
Excited to see this beautiful cover art by @barthvanrossum.bsky.social, which clearly illustrates our new bioconjugation chemistry for precise antibody modification in @jacs.acspublications.org! A big thank you to all co-authors @fmp-berlin.de & Tubulis GmbH and @humboldt-foundation.de for funding!
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Vince Arafiles @vincearafiles.bsky.social · 03/06/2025
Huge development to protein delivery platforms from the Hackenberger lab in @fmp-berlin.de! An awesome collaboration with #JonathanFranke to get this science out in @angewandtechemie.bsky.social BioReversible Arginine Modification (BioRAM) on Amino Groups onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
Intracellular Delivery of Native Proteins by BioReversible Arginine Modification (BioRAM) on Amino Groups
Protein-based tools are emerging as innovative solutions to interfere with biological pathways in molecular biology and medicine. They offer advantages over traditional small molecules due to their a...
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Vince Arafiles @vincearafiles.bsky.social · 05/05/2025
Great and meticulous work by my colleagues @mar_degeus @PhosphorusFive @fmp-berlin.de Orthogonal Site-Specific Dual Bioconjugation of Aryl and Alkyl Thiols | Journal of the American Chemical Society pubs.acs.org/doi/10.1021/...
pubs.acs.org
Orthogonal Site-Specific Dual Bioconjugation of Aryl and Alkyl Thiols
We introduce aryl thiols as nucleophiles for site-specific protein and antibody bioconjugation, which allows the orthogonal labeling of native cysteines for double modification strategies. In a high-y...
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Reposted by Vince Arafiles
Sarah McAnulty, Ph.D. @sarahmackattack.bsky.social · 06/03/2025
Transgenic means that genes from 1 organism have been put into another. We make transgenic mice to understand how genes influence biological processes. We make transgenic plants to make them more nutrient rich. We make transgenic bacteria so they make medicine for us. It's wide-ranging & v. useful.
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Reposted by Vince Arafiles
Ruben Ragg @rubenragg.bsky.social · 28/02/2025
Beyond excited to announce our in-person symposium to celebrate the 25th anniversary of ChemBioChem/ChemPhysChem! Advances in Structural Analysis of Biomolecules From Subcellular Imaging to Drug Design October 23-24, 2025, Berlin Please like and share: cbc-cpc2025.org
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Reposted by Vince Arafiles
Stephan Hacker @stephanhacker2.bsky.social · 03/03/2025
Very much looking forward to the 25th anniversary symposium of ChemBioChem and ChemPhysChem #CBCCPC2025 in Berlin on October 23rd and 24th, 2025. There is an ever growing list of amazing speakers confirmed for this event. (1/2) #chemsky #ChemBio @chemistryeurope.bsky.social www.cbc-cpc2025.org
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