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Sebastiaan (Seb) Vanuytven

@svanuytven.eurosky.social
919 followers 372 following 227 posts

Computational postdoc @cedric-blanpain.bsky.social Lab | Tackling cancer one cell at the time | Science, Coffee, Chess, Running & Bouldering | Views are my own behindthebioinformatics.substack.com

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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 30/09/2026
Weekly reads 21/09/26: How tumors exploit cell states and how we're learning to engineer our own behindthebioinformatics.substack.com/p/weekly-rea... #CancerResearch #SingleCell #TumorMicroenvironment #SyntheticBiology
behindthebioinformatics.substack.com
Weekly reads 21/09/26
How tumors exploit cell states and how we're learning to engineer our own
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Reposted by Sebastiaan (Seb) Vanuytven
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 22/09/2026
DeepSCENIC: transfer learning from sequence-to-function models enables causal gene regulatory network inference www.biorxiv.org/content/10.64898/20…
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 20/09/2026
Weekly reads 14/09/26 : Spatial multiomics, scarless editing, and xenocortical mice: advances across scales and systems behindthebioinformatics.substack.com/p/weekly-rea... #SpatialMultiomics #SingleCell #CRISPR #LineageTracing #Neuroscience #CancerResearch
behindthebioinformatics.substack.com
Weekly reads 14/09/26
Spatial multiomics, scarless editing, and xenocortical mice: advances across scales and systems
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 13/09/2026
Weekly reads 7/9/26 : How spatial transcriptomics, metastasis secrets, and yeast are redefining cancer research behindthebioinformatics.substack.com/p/weekly-rea... #SpatialOmics #CancerResearch #SyntheticBiology #Metastasis #DrugProduction
behindthebioinformatics.substack.com
Weekly reads 7/9/26
How spatial transcriptomics, metastasis secrets, and yeast are redefining cancer research
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 07/09/2026
Weekly reads 31/08/26: How AI, organoids, and GLP-1 agonists are unlocking new frontiers in biology and medicine behindthebioinformatics.substack.com/p/weekly-rea... #Genomics #SingleCell #Ageing #CancerResearch #ComputationalBiologyy
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Inigo Martincorena @imartincorena.bsky.social · 03/09/2026
Big paper alert! This project has been years in the making. A comprehensive description of somatic mutation rates and signatures across 53 tissues or cell types using NanoSeq. A large collective effort led by Mimy Pham, Mike Stratton and @r-rahbari.bsky.social. www.biorxiv.org/content/10.6...
biorxiv.org
A comprehensive atlas of somatic mutation rates and mutational signatures in normal human cells
Over the course of a lifetime, somatic mutations accrue in normal human cells, causing variation in cell phenotype and engendering somatic evolution with outcomes ranging from the adaptive immune syst...
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 23/08/2026
Weekly reads 17/08/26: Uncovering cancer’s hidden architectures, and how to target them behindthebioinformatics.substack.com/p/weekly-rea... #CancerResearch #SpatialOmics #Immunotherapy #ComputationalBiology
behindthebioinformatics.substack.com
Weekly reads 17/08/26
Uncovering cancer’s hidden architectures, and how to target them
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 16/08/2026
Weekly reads 10/08/26 From enhancer atlases to spatial multi-omics: decoding cancer’s epigenetic and microenvironmental complexity behindthebioinformatics.substack.com/p/weekly-rea... #CancerResearch #Epigenetics #SpatialBiology #ComputationalBiology #SingleCell #AIinScience
behindthebioinformatics.substack.com
Weekly reads 10/08/26
From enhancer atlases to spatial multi-omics: decoding cancer’s epigenetic and microenvironmental complexity
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 09/08/2026
Weekly reads 3/08/26: How tumors talk to their surroundings, and how we’re learning to listen behindthebioinformatics.substack.com/p/weekly-rea... #SpatialTranscriptomics #SingleCell #CancerResearch #ComputationalBiology #FoundationModels
behindthebioinformatics.substack.com
Weekly reads 3/08/26
How tumors talk to their surroundings, and how we’re learning to listen
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bioRxiv Genomics @biorxiv-genomic.bsky.social · 05/08/2026
Multi-scale modeling of human tissues from spatial transcriptomics with TERRA www.biorxiv.org/content/10.64898/20…
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 19/07/2026
Weekly reads 13/07/26: From neural memory to microbial manipulation: how sex, epigenetics, and bacteria redefine resilience and disease open.substack.com/pub/behindth... #Epigenetics #CancerResearch #SpatialTranscriptomics #Microbiome #AntibioticResistance
open.substack.com
Weekly reads 13/07/26
From neural memory to microbial manipulation: how sex, epigenetics, and bacteria redefine resilience and disease
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Luca Pinello @lucapinello.bsky.social · 17/07/2026
1/ I'm excited to share that we're launching NECB 2026, the inaugural New England Computational Biology Symposium. Oct 1-2 at Microsoft Research New England, Cambridge. Two days of keynotes,talks, and posters to bring our community together across institutions.Space is limited. newenglandcompbio.org
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Ming Tommy Tang @tommytang.bsky.social · 13/07/2026
Single cell multiomics unravel the transcription networks controlling the different EMT tumor states www.nature.com/articles/s4...
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 13/07/2026
Beyond proud to share our new paper, out in @natcomms.nature.com, where I'm co-last author 🎉 We mapped the transcription factors that control distinct EMT states in cancer and found some surprising new regulators along the way. 🧵 www.nature.com/articles/s41... (1/20)
nature.com
Single cell multiomics unravel the transcription networks controlling the different EMT tumor states - Nature Communications
Epithelial-to-mesenchymal transition (EMT) involves cancer cells shifting between different states linked to tumor progression. Here, the authors use single-cell multiomics and CRISPR/Cas9-mediated lo...
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 13/07/2026
Weekly reads 06/07/26: From cell competition to genetic edges: how intercellular interactions redefine disease and discovery open.substack.com/pub/behindth... #CellBiology #Neuroscience #ComputationalBiology #Alzheimers #CancerResearch
open.substack.com
Weekly reads 06/07/26
From cell competition to genetic edges: how intercellular interactions redefine disease and discovery
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 28/06/2026
Weekly reads 22/6/26 How spatial context, summary statistics, and scalable frameworks are transforming biology open.substack.com/pub/behindth... #SpatialTranscriptomics #SingleCell #ComputationalBiology #DrugDiscovery #Genomics
open.substack.com
Weekly reads 22/6/26
How spatial context, summary statistics, and scalable frameworks are transforming biology
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 21/06/2026
Weekly reads 15/06/26: From spatial counterfactuals to tumor microbiomes: how context reshapes biology open.substack.com/pub/behindth... #SpatialTranscriptomics #SingleCell #CancerResearch #ComputationalBiology #Microbiome
open.substack.com
Weekly reads 15/06/26
From spatial counterfactuals to tumor microbiomes: how context reshapes biology
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 14/06/2026
Weekly reads 8/06/26: The invisible foundations of cancer: early malignancy, epigenetic plasticity, and the tools to see it all open.substack.com/pub/behindth... #CancerResearch #SingleCell #Epigenetics #SpatialOmics #ComputationalBiology
open.substack.com
Weekly reads 8/06/26
The invisible foundations of cancer: early malignancy, epigenetic plasticity, and the tools to see it all
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 07/06/2026
Weekly reads 1/06/26 : Spatial screens, communication maps, and a pancreatic cancer milestone open.substack.com/pub/behindth... #SpatialBiology #SingleCell #CancerResearch #SpatialOmics
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 31/05/2026
Weekly reads 25/05/26: Mapping biology across space, time, and scale with AI-powered discovery open.substack.com/pub/behindth... #CancerResearch #SpatialBiology #SingleCell #ComputationalBiology #SystemsBiology
open.substack.com
Weekly reads 25/05/26
Mapping biology across space, time, and scale with AI-powered discovery
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 24/05/2026
Weekly reads 18/05/26 : Twin tumors, spatial maps, and stromal rewiring open.substack.com/pub/behindth... #SpatialTranscriptomics #CancerResearch #SingleCell #ComputationalBiology
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 17/05/2026
Weekly reads 11/05/26: How cells communicate, adapt, and age across space and time open.substack.com/pub/behindth... #SpatialOmics #CancerResearch #SingleCell #ComputationalBiology
open.substack.com
Weekly reads 11/05/26
How cells communicate, adapt, and age across space and time
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Laura Cantini @cantinilab.bsky.social · 12/05/2026
📢 We are recruiting! We are looking for postdoctoral researchers to join my team at @pasteur.fr (research.pasteur.fr/en/team/mach...). We develop AI methods to infer cellular dynamics and gene regulation. If you are interested, send me an email with your CV. We look forward to hearing from you!
research.pasteur.fr
Machine Learning for integrative genomics – Research
Single-cell high-throughput sequencing, a major breakthrough in life sciences, allows to access the integrated molecular profiles of thousands of cells in a single experiment. This abundance of data p...
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Reposted by Sebastiaan (Seb) Vanuytven
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 11/05/2026
InterScale reveals multi-scale cellular interaction programs in spatial transcriptomics www.biorxiv.org/content/10.64898/20…
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 10/05/2026
Weekly reads 04/05/26: Virtual spatial transcriptomes, tumor ecotypes, and the hidden logic of cell communication open.substack.com/pub/behindth... #SpatialTranscriptomics #CancerResearch #SingleCell #ComputationalBiology (1/3)
open.substack.com
Weekly reads 04/05/26
Virtual spatial transcriptomes, tumor ecotypes, and the hidden logic of cell communication
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 03/05/2026
Weekly reads 27/4/36: Reference-free discovery, spatial resolution, and targeting tumor states open.substack.com/pub/behindth... #SingleCell #SpatialOmics #CancerResearch #ComputationalBiology
open.substack.com
Weekly reads 27/4/36
Reference-free discovery, spatial resolution, and targeting tumor states
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 26/04/2026
Weekly reads 20/4/26: From metastatic clones to synthetic DNA: how cell fate is written and rewritten open.substack.com/pub/behindth... #CancerResearch #SingleCell #SpatialOmics #Immunology #Genomics
open.substack.com
Weekly reads 20/4/26
From metastatic clones to synthetic DNA: how cell fate is written and rewritten
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 19/04/2026
Weekly reads 13/04/26: From mutation mapping to mitochondrial therapy: rethinking cell State and resistance open.substack.com/pub/behindth... #CancerResearch #SingleCell #SpatialOmics #PrecisionMedicine
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Stein Aerts @steinaerts.bsky.social · 16/04/2026
Very proud of this and so cool that enhancer-level models can predict the effect of genetic variation. There is so much personal variation in terms of gene regulation in the human brain, it is fantastic to uncover this thanks to technology (whole-genome sequencing and single-cell multiomics) and AI
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Johanna Joyce @johannajoyce.bsky.social · 16/04/2026
What does it take to truly understand #cancer in all of its complexity? Delighted to share our Review in Cell "Cancer ecosystems: A dynamic interplay across scales" with Daniela Quail, where we propose a multi-scale framework connecting tumor ecology with physiology 🧪⚕️ www.cell.com/cell/fulltex...
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Reposted by Sebastiaan (Seb) Vanuytven
Inigo Martincorena @imartincorena.bsky.social · 15/04/2026
Excited to share our latest work in Nature. Applying single-molecule and single-cell DNA sequencing methods, we uncover an extraordinary landscape of somatic mutations in immune checkpoint genes in autoimmune B cells, suggesting that somatic mutations may be key to autoimmunity [1/n] rdcu.be/fdqbr
rdcu.be
Polyclonal selection of immune checkpoint mutations in thyroid autoimmunity
Nature - Polyclonal selection of immune checkpoint mutations in thyroid autoimmunity
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 12/04/2026
Weekly reads 06/04/26: When cells compete, learn, and communicate open.substack.com/pub/behindth... #SingleCell #CancerResearch #SpatialBiology #ComputationalBiology
open.substack.com
Weekly reads 06/04/26
When cells compete, learn, and communicate
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Reposted by Sebastiaan (Seb) Vanuytven
Richard Sever @richardsever.bsky.social · 10/04/2026
Why bioRxiv exhibit 10000001
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Stein Aerts @steinaerts.bsky.social · 09/04/2026
We launched a new Group Leader vacancy in our Center for AI & Computational Biology - VIB.AI @vibai.bsky.social - with a Professorship at Ghent University. Join us with your most creative AI+Biology research plan! Apply before 31st May vib.ai/en/group-lea...
vib.ai
Group leader vacancy
We are looking for a Group Leader in applied artificial intelligence in (bio)medical research at VIB.AI & UGent, Belgium
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 05/04/2026
Weekly reads 30/3/26 : From synthetic genomes to multi-omics cells: integrating and rewriting biology open.substack.com/pub/behindth... #SyntheticBiology #SingleCell #SpatialOmics #Genomics #ComputationalBiology
open.substack.com
Weekly reads 30/3/26
From synthetic genomes to multi-omics cells: integrating and rewriting biology
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Stegle Lab @steglelab.bsky.social · 31/03/2026
Join us for a postdoc in AI in human genetics at @embl.org in close collaboration with Adrian Cortes (GSK) and @brianfclarke.bsky.social - exploring the effects of rare variants using population-scale cohorts and single-cell readouts. 🔗 Apply now: embl.wd103.myworkdayjobs.com/en-US/EMBL/d...
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Reposted by Sebastiaan (Seb) Vanuytven
Chris Tape @christophertape.bsky.social · 31/03/2026
We are recruiting! We are searching for an exceptional postdoctoral fellow to lead the single-cell phenoscaping efforts of the REWIRE-CAN Cancer Grand Challenge @cancergrand.bsky.social For more information and to apply please visit: www.ucl.ac.uk/work-at-ucl/...
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Reposted by Sebastiaan (Seb) Vanuytven
Steven Salzberg @stevensalzberg.bsky.social · 30/03/2026
In my latest column, I explain some of my reasons for being deeply skeptical about AI models that claim to understand DNA, genes, and genomes: stevensalzberg.substack.com/p/ai-is-star...
stevensalzberg.substack.com
AI is starting to look like pseudoscience
Not all of it, but some scientists are too eager to believe their own hype
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 29/03/2026
Weekly reads 23/3/26: Memory, models, and massive data: rethinking cancer across scales open.substack.com/pub/behindth... #CancerResearch #SingleCell #SpatialOmics #ComputationalBiology #SystemsBiology
open.substack.com
Weekly reads 23/3/26
Memory, models, and massive data: rethinking cancer across scales
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 22/03/2026
Weekly reads 16/3/26: Rewiring cancer biology across scales: from 3D genomes to microbial niches open.substack.com/pub/behindth... #CancerResearch #SingleCell #SpatialOmics #Immunology #ComputationalBiology #AI
open.substack.com
Weekly reads 16/3/26
Rewiring cancer biology across scales: from 3D genomes to microbial niches
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 16/03/2026
Weekly reads 9/3/26: How tumors adapt and how new tools are helping us see it open.substack.com/pub/behindth... #Cancer #SingleCell #Immunotherapy #ComputationalBiology
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 08/03/2026
Weekly reads 23/2/26: When context controls cancer: oxygen, space, niches and chromatin open.substack.com/pub/behindth... Cancer isn’t just mutations: it’s metabolism, space, niches, and chromatin. #CancerResearch #SingleCell #SpatialBiology #TumorMicroenvironment #PrecisionOncology
open.substack.com
Weekly reads 23/2/26
When context controls cancer: oxygen, space, niches and chromatin
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Maria Alcolea @mariapalcolea.bsky.social · 04/03/2026
🚨 New paper from our lab just published in Nature🚨 www.nature.com/articles/s41... Discover how 🌱 tumour formation is shaped by tissue context from the very beginning. Cancer is not driven by genetics alone ✨Fantastic team led by Greta Skrupskelyte, Eduardo Rojo, @hariajith.bsky.social
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Dr. Jean Fan @jef.works · 02/03/2026
As an alternative to the h-index, I made the Mentorship Index (M-index) to proxy a scientist's contribution to mentoring junior scientists. Ex. M10-index = # last-author publications where the first author had < 10 pubs. Calculate yours: jef.works/Mentorship-I... Blog: jef.works/blog/2026/03... 🧵👇
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 28/02/2026
This week I’ve been thinking about what matters most in science. For me, it’s mentoring. I wrote a short reflection on the people who shaped me, and the lessons I hope to pass forward someday: open.substack.com/pub/behindth...
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 22/02/2026
Weekly reads 16/2/26: From ecDNA to epigenomic priming: modeling what averages miss open.substack.com/pub/behindth... Overall theme: Averages hide, structure reveals. #SingleCell #SpatialOmics #CancerBiology #ComputationalBiology #MultiOmics #AIinBiology
open.substack.com
Weekly reads 16/2/26
From ecDNA to epigenomic priming: modeling what averages miss
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 15/02/2026
Weekly reads 9/2/25: Systemic programs and structured models across cancer and aging open.substack.com/pub/behindth... Mechanism + structure > scale alone. #CancerBiology #SingleCell #Genomics #Aging #Immunology #AIinBiology #LineageTracing
open.substack.com
Weekly reads 9/2/25
Systemic programs and structured models across cancer and aging
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Jonas Demeulemeester @jdemeul.bsky.social · 09/02/2026
🧬 We're hiring a postdoc! Come chart somatic evolution with us using cutting-edge long-read & single-cell tech 🔬 Computational bio background + love for complex cancer genomics = perfect fit 📍 Leuven, Belgium 📧 jobs.vib.be/j/129915/ #postdoc #genomics #hiring
jobs.vib.be
Postdoctoral Researcher in Cancer Genomics - VIB
Chart tumour evolution using cutting-edge long-read and single-cell multiomics Who we are The Integrative Cancer Genomics lab (Jonas Demeulemeester) is embedded within the VIB – KU Leuven Center for ...
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Sebastiaan (Seb) Vanuytven @svanuytven.eurosky.social · 08/02/2026
Weekly reads 2/2/26 : How space, context, and uncertainty reshape cancer and single-cell biology open.substack.com/pub/behindth... Big theme: space + context + mechanism > black-box scale alone. #SpatialOmics #SingleCell #CancerBiology #TumorMicroenvironment #AIinBiology #Immunology
open.substack.com
Weekly reads 2/2/26
How space, context, and uncertainty reshape cancer and single-cell biology
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Fabian Theis @fabiantheis.bsky.social · 03/02/2026
🚀 Interested in a postdoc in computational biology & AI for neuroscience? The NOMIS Synergy Fellowship offers a great opportunity to develop such a position in my lab within the interdisciplinary Synergy excellence cluster. 🔗 www.synergy-munich.de/news-events/...
synergy-munich.de
NOMIS–SyNergy Fellowship Program in Systems Neurology (Munich, Germany) | SyNergy - Munich Cluster for Systems Neurology
The NOMIS Foundation, in collaboration with the DFG-funded Munich Cluster for Systems Neurology (SyNergy), invites exceptional early-career scientists from around the world to apply for elite…
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