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SPMIR Group 🧫🌿🔬

@spmir.bsky.social
220 followers 206 following 10 posts

Sensors for Plant–Microbe Interactions and Responses (SPMIR) Group at UMR5240 (Université de Lyon, UCBL, CNRS, INSA Lyon) #newPI Lead @mayurisadoine.bsky.social‬ spmir-group.academicwebsite.com

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Reposted by SPMIR Group 🧫🌿🔬
Ribbe Hu Labs @ribbehulab.bsky.social · 02/10/2026
Congrats, Yimo, on your first first-author paper! And a big thank you to everyone for the fantastic team effort! Also, a big thank you to Angewandte Chemie Int Ed for providing us with a fantastic platform to showcase our work! doi.org/10.1002/anie...
doi.org
Gain‐of‐Function Engineering of the NifEN Scaffold Into a Self‐Assembling Nitrogenase
From scaffold to enzyme: Systematic engineering of the cofactor maturation scaffold NifEN reconstructs the P→M electron relay along with cofactor coordination and proton gating at the S2B site, conve....
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Reposted by SPMIR Group 🧫🌿🔬
Gautier Langin @glangin.bsky.social · 18/09/2026
Very nice Spotlight article in @cp-trendscellbio.bsky.social about our recent @cp-molcell.bsky.social article (doi:10.1016/j.molcel.2026.04.004). If you want a summary of our findings and their implications for proteostasis control, please have a read !👇🤓 www.cell.com/trends/cell-...
cell.com
ER-associated sorting links proteostasis to photosynthesis
Proteotoxic stress challenges multiple organelles, but how plants coordinate proteasome capacity with organellar function remains unclear. Langin et al. reveal that endoplasmic reticulum (ER)-associat...
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Reposted by SPMIR Group 🧫🌿🔬
Snorre Sulheim @sulheim.bsky.social · 18/09/2026
Finally online! Cross-feeding enables robust coexistence between four bacterial species | PNAS www.pnas.org/doi/10.1073/... #microsky
pnas.org
Cross-feeding enables robust coexistence between four bacterial species | PNAS
Resource supply is generally considered a dominant driver of microbial diversity. Here, using a four-species bacterial consortium, we asked whether...
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Reposted by SPMIR Group 🧫🌿🔬
SPMIR Group 🧫🌿🔬 @spmir.bsky.social · 05/06/2026
Meet Amandine Achard! Master’s student of the SPMIR group, Amandine explores how bacteriophages interact with the plant pathogen Xanthomonas hortorum pv. vitians using microfluidics and biosensor imaging 🔬 🦠 🧫 Her next step 🎯: a PhD in microbiology! #PlantScience #ECR 👉 shorturl.at/YPQeF
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Reposted by SPMIR Group 🧫🌿🔬
SPMIR Group 🧫🌿🔬 @spmir.bsky.social · 08/05/2026
We are pleased to welcome Lydia Hamek to our group, a Master’s student in microbiology who recently joined us. Using real-time biosensor imaging, she studies how pathogens colonize plant hosts 🌱🦠 Her goal 🎯 is to pursue a PhD and a career in research. #PlantScience #ECR 👉 lnkd.in/eKqZFmhH
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Reposted by SPMIR Group 🧫🌿🔬
Jose M. Estevez @estevezjosem.bsky.social · 04/09/2026
Happy to share a joint work leaded by Hernan Salinas Grenet between Jose M. Alvarez´lab and my group on "GRNs acting on dual stress Low Pi and Salt stress in roots" using data mining and functional validation. Please take a look here www.biorxiv.org/content/10.6... #roots #multiplestresses
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Reposted by SPMIR Group 🧫🌿🔬
Guillaume Hummel 🌱 🇪🇺 🇫🇷 🥨 🇮🇹 @guillaumehummel.bsky.social · 01/09/2026
Can transfer RNA (tRNA) genes help reconstruct ~1.5 billion years of photosynthetic evolution? 🌊🦠🏞️🌱 In our new Review in @embojournal.org, we explore what tRNA biology can reveal about endosymbiosis, terrestrialization and the evolution of translation. link.springer.com/article/10.1...
link.springer.com
From water to land: evolution of tRNA gene repertoires in photosynthetic organisms - The EMBO Journal
Photosynthetic eukaryotes have undergone evolutionary shifts from aquatic to terrestrial habitats, accompanied by changes in genome organization and gene regulation. Yet, the evolution of transfer RNA...
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Reposted by SPMIR Group 🧫🌿🔬
Louise Fougere @louisefougere.bsky.social · 14/08/2026
Super happy to share with Magali Grison, @yohannboutte.bsky.social and Christel Poujol this amazing method of super-resolution in plant-cell microscopy 🤗 always further ! always more extraordinary !🔬 🪴 @lbm-bordeaux.bsky.social @bic-bordeaux.bsky.social @univbordeaux.bsky.social
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SPMIR Group 🧫🌿🔬 @spmir.bsky.social · 05/06/2026
Meet Amandine Achard! Master’s student of the SPMIR group, Amandine explores how bacteriophages interact with the plant pathogen Xanthomonas hortorum pv. vitians using microfluidics and biosensor imaging 🔬 🦠 🧫 Her next step 🎯: a PhD in microbiology! #PlantScience #ECR 👉 shorturl.at/YPQeF
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SPMIR Group 🧫🌿🔬 @spmir.bsky.social · 08/05/2026
We are pleased to welcome Lydia Hamek to our group, a Master’s student in microbiology who recently joined us. Using real-time biosensor imaging, she studies how pathogens colonize plant hosts 🌱🦠 Her goal 🎯 is to pursue a PhD and a career in research. #PlantScience #ECR 👉 lnkd.in/eKqZFmhH
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Reposted by SPMIR Group 🧫🌿🔬
Cecile Lorrain @ccilelorrain.bsky.social · 03/05/2026
New preprint out! We generated haplotype-phased genome assemblies for two poplar rust fungi. These resources open new opportunities to explore rust genome architecture, haplotype diversity, and TE-driven evolution. www.biorxiv.org/content/10.6...
biorxiv.org
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Cecile Lorrain @ccilelorrain.bsky.social · 15/04/2026
Thrilled to share our paper now out in Nature Plants 🎉 We developed a genome-host association (GHA) approach to study pathogen adaptation directly from field metadata by using the originating host cultivar as phenotype. www.nature.com/articles/s41...
nature.com
Genome–host association mapping reveals wheat pathogen genes involved in host specialization - Nature Plants
This study introduces genome–host association (GHA), leveraging natural epidemics to map the genetic landscape of host adaptation in the pathogen Zymoseptoria tritici. Applied to 832 wheat fungal stra...
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Reposted by SPMIR Group 🧫🌿🔬
SPMIR Group 🧫🌿🔬 @spmir.bsky.social · 09/03/2026
Imaging of plant–microbe interactions by the SPMIR group 😉 #FluorescentMonday #Microscopy #ScienceIsArt
Plant-microbes expressing biosensors interacting with plant roots.
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SPMIR Group 🧫🌿🔬 @spmir.bsky.social · 13/04/2026
We are pleased to offer a postdoctoral fellowship opportunity (MSCA-PF 2026) in our group. Interested? Have a look here 👉 shorturl.at/VYGHN
shorturl.at
SPMIR Group - Open position(s)
Postdoc Position(s) 1 MSCA Postdoctoral Fellowship 2026 PDF file PhD Position(s) No open positions at this time Master Project (s) No open positions ...
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SPMIR Group 🧫🌿🔬 @spmir.bsky.social · 09/03/2026
Imaging of plant–microbe interactions by the SPMIR group 😉 #FluorescentMonday #Microscopy #ScienceIsArt
Plant-microbes expressing biosensors interacting with plant roots.
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Reposted by SPMIR Group 🧫🌿🔬
James Barrett @james-r-barrett.bsky.social · 30/01/2026
How does molecular valency shape condensate assembly and function? We used the CO2-fixing organelle in algae—the pyrenoid—to find out… 🧵 Preprint here!: www.biorxiv.org/content/10.6... @cellarchlab.com @phaips.vd.st @biologyatyork.bsky.social #Rubisco #PhaseSeparation #Condensates #Pyrenoid
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Jo Hepworth @coolcabbage.bsky.social · 20/02/2026
ONE WEEK to the deadline! #PlantSciJobs #phd #plantsciphd email me jo.a.hepworth@durham.ac.uk for more information (I'm friendly and keen to meet you!) and tips on application documents. www.needl.org.uk
needl.org.uk
NEEDL - North East of England Doctoral Landscape
The North East of England Doctoral Landscape (NEEDL) is a cutting edge bioscience research training partnership, developing researchers for the future.
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SPMIR Group 🧫🌿🔬 @spmir.bsky.social · 04/01/2026
Happy New Year from the SPMIR Group! May this year bring you health, joy, and success.
Happy New Year from the SPMIR Group. The image shows an illustration of our research topics.
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SPMIR Group 🧫🌿🔬 @spmir.bsky.social · 21/12/2025
The SPMIR group wishes you a lovely end of 2025 and a happy New Year 2026! May the coming year be full of success and joy for all of you 🥂
The image displays fluorescent bacteria organized into a heart-shaped structure.
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SPMIR Group 🧫🌿🔬 @spmir.bsky.social · 23/11/2025
Optimizing our plant imaging protocol and having fun along the way 😜
It is an illustration of some of our plant transgenic lines imaged during the optimization of our protocol.
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Reposted by SPMIR Group 🧫🌿🔬
Aureliano Bombarely @bombarelya.bsky.social · 18/11/2025
We have done our first @protocolsio.bsky.social. Are you interested about #genome_annotation quality evaluation? We have developed a tool called #GAQET2 (github.com/victorgcb198...) which runs several tools like #AGAT, #BUSCO, and many other tools. You can find it at www.protocols.io/view/structu...
github.com
GitHub - victorgcb1987/GAQET2
Contribute to victorgcb1987/GAQET2 development by creating an account on GitHub.
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SPMIR Group 🧫🌿🔬 @spmir.bsky.social · 16/11/2025
Bethel Dereje attended with curiosity the 2025 colloquium of the Association Femmes et sciences. This organization that advocates for gender equality in science from preschool all the way to higher education. What an inspiring picture of a talented young scientist full of enthusiasm 🥰
Bethel at the 2025 colloquium of the Association Femmes et Sciences
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Reposted by SPMIR Group 🧫🌿🔬
SPMIR Group 🧫🌿🔬 @spmir.bsky.social · 17/10/2025
Our new protocol paper is out in JoVE. “Fluorophore-based Genetically Encoded Biosensors for Ratiometric Fluorescence Imaging in Microbes” Open access link: udl.hal.science/hal-05206336/
udl.hal.science
Fluorophore-based Genetically Encoded Biosensors for Ratiometric Fluorescence Imaging in Microbes
Investigating small-molecule dynamics within microbes is essential for comprehensive studies of microbial function. Both intra-organism and inter-organism small molecule dynamics play critical roles in microbial physiology, symbiosis, and disease. However, monitoring these dynamics remains highly challenging using most existing techniques. Fluorophore-based genetically encoded biosensors are powerful tools for tracking small-molecule dynamics in vivo and hold high potential for driving new discoveries. These biosensors are most commonly used in fluorescence imaging, often in combination with perfusion devices that allow precise control over environmental conditions. When integrated with advanced imaging techniques, this approach provides high-resolution, spatially and temporally resolved data, enabling insights into single-cell microbial responses. Despite their promise, implementing such biosensors remains technically challenging. Understanding the key steps is crucial for broader adoption. Here, we present a protocol designed to support the effective deployment of newly engineered biosensors into microbes for quantitative ratiometric fluorescence imaging under controlled conditions.
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Reposted by SPMIR Group 🧫🌿🔬
SPMIR Group 🧫🌿🔬 @spmir.bsky.social · 02/11/2025
We are currently (re)building ourselves…and making pictures for memories 😉 #NewTeam #NewPI
The pictures show the setup of our research group.
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SPMIR Group 🧫🌿🔬 @spmir.bsky.social · 02/11/2025
We are currently (re)building ourselves…and making pictures for memories 😉 #NewTeam #NewPI
The pictures show the setup of our research group.
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Reposted by SPMIR Group 🧫🌿🔬
Silvia Manrique @tank-silvia.bsky.social · 29/10/2025
🌱🧪 So thrilled to have contributed to this manifesto for #PlantScience #Education, published in @plantspeopleplanet.bsky.social, and instigated by the visionary and enthusiastic @katharinehubbard.bsky.social and co-led by @apaterlini.bsky.social and @lizalvey.bsky.social 🧶 1/3
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Natalia Guayazán Palacios @nataliagupa.bsky.social · 23/10/2025
I am thrilled to share the peer reviewed version of our work on how the circadian clock gates In11-induced responses to tightly regulate induced antiherbivore responses in legumes. onlinelibrary.wiley.com/doi/10.1111/pc…
onlinelibrary.wiley.com
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Reposted by SPMIR Group 🧫🌿🔬
Noémie Claveyroles @noemieclaveyroles.bsky.social · 22/10/2025
A worm among bacterial stars ✨️🪱 My picture of bacterial-nematode symbiosis made the cover of AEM with my first thesis paper !! journals.asm.org/doi/10.1128/... #SymbioSky
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Reposted by SPMIR Group 🧫🌿🔬
Ignacio Izeddin @izeddinresearch.bsky.social · 13/10/2025
SPT of DNA repair proteins after cell irradiation by Ashli Kobayashi @asaki-kobayashi.bsky.social and Romane Riou. Setup by Abbelight @abbelight.bsky.social and irradiator by Errol Laser @errol-laser.bsky.social. Look at that recruitment! #Mifobio2025 @gdrimabio.bsky.social
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SPMIR Group 🧫🌿🔬 @spmir.bsky.social · 17/10/2025
Our new protocol paper is out in JoVE. “Fluorophore-based Genetically Encoded Biosensors for Ratiometric Fluorescence Imaging in Microbes” Open access link: udl.hal.science/hal-05206336/
udl.hal.science
Fluorophore-based Genetically Encoded Biosensors for Ratiometric Fluorescence Imaging in Microbes
Investigating small-molecule dynamics within microbes is essential for comprehensive studies of microbial function. Both intra-organism and inter-organism small molecule dynamics play critical roles in microbial physiology, symbiosis, and disease. However, monitoring these dynamics remains highly challenging using most existing techniques. Fluorophore-based genetically encoded biosensors are powerful tools for tracking small-molecule dynamics in vivo and hold high potential for driving new discoveries. These biosensors are most commonly used in fluorescence imaging, often in combination with perfusion devices that allow precise control over environmental conditions. When integrated with advanced imaging techniques, this approach provides high-resolution, spatially and temporally resolved data, enabling insights into single-cell microbial responses. Despite their promise, implementing such biosensors remains technically challenging. Understanding the key steps is crucial for broader adoption. Here, we present a protocol designed to support the effective deployment of newly engineered biosensors into microbes for quantitative ratiometric fluorescence imaging under controlled conditions.
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Reposted by SPMIR Group 🧫🌿🔬
Maxence Lejars @mlejars.bsky.social · 15/10/2025
🤯
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