Sign in

Rafał Szabla

@rafal-szabla.bsky.social
231 followers 361 following 27 posts

Theoretical Chemist; Group leader at the Wrocław University of Science and Technology; interested in biomolecular (photo)chemistry, photoinduced electron transfer and prebiotic chemistry; avid runner; iam.pwr.edu.pl/people/rafal-szabla

PostsRepliesMedia
Reposted by Rafał Szabla
Narodowe Centrum Nauki @ncn.gov.pl · 10/09/2026
W 10. odcinku serii #pokolenieNCN gościem jest @rafal-szabla.bsky.social, który bada, jak z prostych związków chemicznych mogły powstać cegiełki życia na młodej Ziemi. ncn.gov.pl/aktualnosci/... Premiera o 15.00. Zapraszamy! @wroclaw-tech.bsky.social
021
Reposted by Rafał Szabla
Narodowe Centrum Nauki @ncn.gov.pl · 24/08/2026
#pokolenieNCN Czy szczury w Warszawie różnią się od tych w Krakowie, czy Gdańsku? Czy mogą przenosić inne patogeny? Zapraszamy do obejrzenia rozmowy w cyklu #pokolenieNCN z udziałem prof. Macieja Grzybka, epidemiologa i parazytologa. youtu.be/ArR0gGV-mS0?...
011
Reposted by Rafał Szabla
Q-Chem @qchemsoftware.bsky.social · 20/05/2026
Q-Chem's Δ-ALMO(MSDFT2) combines ΔSCF with ALMO to generate diabatic states, then uses MSDFT2 to obtain their couplings with charge-transfer states. Here, developers test Δ-ALMO(MSDFT2) on systems ranging from singlet fission to DNA repair: doi.org/10.1063/5.00...
011
Reposted by Rafał Szabla
Simons Foundation @simonsfoundation.org · 25/04/2026
On his birthday, we're remembering our late co-founder Jim Simons — a true visionary in mathematics, investing and philanthropy. #science #math
0114
Rafał Szabla @rafal-szabla.bsky.social · 18/04/2026
Looking for a Post-doc in QM and MD simulations of RNA? Join us! <2 days left to apply: euraxess.ec.europa.eu/jobs/424962 We are working on nonenzymatic RNA self-replication and the development of machine learning potentials for the simulation of nucleic acids :).
011
Rafał Szabla @rafal-szabla.bsky.social · 17/04/2026
Previously, we characterized the self-repair of DNA photolesions for sequences as GATT. We just discovered that RNA exhibits different yields because of its secondary structure. Relative arrangement of nuleobases determines the photochemistry. @acs.org @ncn.gov.pl pubs.acs.org/doi/full/10....
030
Rafał Szabla @rafal-szabla.bsky.social · 11/02/2026
The International Day of Women and Girls in Science is an excellent opportunity to share with you some info about the outstanding female PhD students that I have the privilege to work with. Below, Róża Okoń, 1st year PhD student working on kinetics of complex (photo)chemical reactions 🙂. 1/2
100
Rafał Szabla @rafal-szabla.bsky.social · 11/02/2026
I am looking for a Postdoctoral Researcher who will focus on computational studies of RNA. Topics include studying non-enzymatic RNA self-replication with MD and QM/MM methods, and applying/developing machine learning potentials for RNA. Full info under: euraxess.ec.europa.eu/jobs/405129
euraxess.ec.europa.eu
Research associate/visiting researcher in computational chemistry
Faculty/Unit/Organizational unit: Faculty of Chemistry/ Wroclaw University of Science and Technology
032
Rafał Szabla @rafal-szabla.bsky.social · 10/02/2026
Have you ever wondered what happens to DNA after absorption of light? It could lead to photoinduced electron transfer. Our new approach to the calculation of photoinduced electron timescales was just published! pubs.acs.org/doi/10.1021/... See our simulation of this process: youtu.be/eSzKTzZJgmo
pubs.acs.org
Accurate Prediction of Photoinduced Electron Transfer Timescales with Nonadiabatic Microcanonical Rate Theory
Photoinduced electron transfer (PET) lies at the heart of energy conversion from light into chemical reactions. It governs a variety of biological processes including DNA damage and repair and biological photosynthesis. Quantifying PET rates and optimizing them is also crucial for selective photoredox catalysis. However, commonly used rate theories break down for PET operating in the strong coupling and nonequilibrium regimes, while excited-state dynamics simulations are computationally demanding and require complex analysis to extract PET times. Here, we employed surface-hopping nonadiabatic excited-state dynamics simulations and statistical rate theories to characterize ultrafast PET in a dimer of stacked adenine nucleobases. We show that the widely used classical Marcus Theory and Fermi’s Golden Rule fail to describe ultrafast PET or even reproduce qualitative rate trends. Instead, we propose a chromophore-localized variant of nonadiabatic Rice–Rampsperger–Kassel–Marcus (NA-RRKM) theory, which yields PET timescales that are in excellent agreement with excited-state dynamics simulations.
030
Rafał Szabla @rafal-szabla.bsky.social · 16/01/2026
Nonenzymatic self-replication of nucleic acids is driven by helicity type A! The unique structure of RNA is predisposed to nonenzymatic copying, and DNA can be copied on an RNA template. Is this why nature chose RNA? Great work by Barbara, from my group! pubs.rsc.org/en/content/a...
pubs.rsc.org
A-type helicity controls efficient nonenzymatic template copying of nucleic acids
We performed classical molecular dynamics simulations for DNA self-replication on an RNA template with phosphoroimidazole activation. We demonstrate that the RNA template imposes A-type helicity on th...
151
Rafał Szabla @rafal-szabla.bsky.social · 10/06/2025
Zinc can stabilize the smallest functional protein motifs. In our @chemicalscience.rsc.org article, we also showed that Zn2+ protects small potentially prebiotic peptides from photodegradation involving photoinduced electron transfer. pubs.rsc.org/en/content/a...
151
Rafał Szabla @rafal-szabla.bsky.social · 30/05/2025
I had a great pleasure to collaborate with @biomimetic-chem.bsky.social , develop and characterize a previously poorly understood reaction - quinol-enedione rearrangement. See the excellent experimental work with a small support of my DFT calculations😉 ! pubs.acs.org/doi/full/10....
pubs.acs.org
Quinol–Enedione Rearrangement
The quinol–enedione rearrangement enables the synthesis of 2-cyclohexene-1,4-diones from readily available para-quinol substrates. Building on sporadic early reports of this transformation, we have op...
041
Rafał Szabla @rafal-szabla.bsky.social · 27/05/2025
We evaluated the binding of activated dinucleotides in nonenzymatic RNA self-replication scenarios using molecular dynamics simulations. See the 1st paper by Basia, a 2nd year PhD student in my lab🥳! chemistry-europe.onlinelibrary.wiley.com/doi/abs/10.1... Preprint: chemrxiv.org/engage/chemr...
131
Reposted by Rafał Szabla
Chemical Science @chemicalscience.rsc.org · 23/05/2025
Check out our 2024 #ChemSciMostPopular chemical biology collection, which is online now! Read the collection here: pubs.rsc.org/en/jour... #ChemBio #ChemSky 🧪
122
Reposted by Rafał Szabla
Guldi Group @guldi-group.bsky.social · 30/04/2025
📣 The abstract submission deadline for the 32nd International Conference on Photochemistry has been extended to 12 May 2025! 🔬Join us in Aachen, 13–18 July 2025, for great science in a historic setting!
042
Reposted by Rafał Szabla
Giulia Palermo @giuliapalermo.bsky.social · 02/04/2025
New paper from our lab just out @pnas.org! 🚀 Using free energy simulations, #AIphaFold and #cryoEM refinement, we uncovered a key conformational change in a paradigm-shifting #CRISPR-associated #transposon capable of precise gene knock-ins. 🔍🧬 www.pnas.org/doi/epub/10....
0295
Reposted by Rafał Szabla
BejaLabTechnion @bejalab.bsky.social · 21/04/2025
Signs of life on a distant planet? Not so fast, say these astronomers www.nature.com/articles/d41...
nature.com
Signs of life on a distant planet? Not so fast, say these astronomers
Bold claims of ‘biosignature’ molecules trigger an outpouring of scepticism.
012
Rafał Szabla @rafal-szabla.bsky.social · 07/04/2025
Our research article about photoinduced electron transfer in DNA was selected as one of the most popular Chemical Science papers in chemical biology! pubs.rsc.org/en/content/a... @chemicalscience.rsc.org @wroclaw-tech.bsky.social
pubs.rsc.org
Photoinduced charge separation and DNA self-repair depend on sequence directionality and stacking pattern
Charge separation is one of the most common consequences of the absorption of UV light by DNA. Recently, it has been shown that this process can enable efficient self-repair of cyclobutane pyrimidine ...
062
Reposted by Rafał Szabla
Sandra Gómez @quimicafisica1.bsky.social · 06/03/2025
Are you using nonadiabatic dynamics for complex systems? Join us in sunny Spain for the "Future Directions in Non-Adiabatic Dynamics" workshop (Sept 2-5, 2025) at CECAM-Zaragoza! Register by June 3. Check out the event page: tinyurl.com/2nvnanf2 #NAMD #NonAdiabaticDynamics #CECAM
0227
Reposted by Rafał Szabla
Magdalena Skipper @magdalenaskipper.bsky.social · 20/02/2025
Trump’s siege of science: how the first 30 days unfolded & what’s next Once upon a time leaders believed that science was essential to nation’s security, to better health, to more jobs, to a higher standard of living & to cultural progress 🧪 #academicSky @nature.com www.nature.com/articles/d41...
nature.com
Trump’s siege of science: how the first 30 days unfolded and what’s next
The breakneck pace and devastating impact of the administration’s policy changes has shocked researchers.
37845
Reposted by Rafał Szabla
Sandra Gómez @quimicafisica1.bsky.social · 23/01/2025
Last week to register to the 11th Winter School in Computational Chemistry (27-31 Jan)! take a look at our great program, register for free and come along to learn a lot about #theochem 😊 winterschool.cc/program
winterschool.cc
Virtual Winter School on Computational Chemistry - Program 2025
Online congress discussing state of the art computational chemistry
051
Reposted by Rafał Szabla
Zeke Hausfather @zekehausfather.com · 15/01/2025
I have a new paper in Dialogues on Climate Change exploring climate outcomes under current policies. I find that we are likely headed toward 2.7C by 2100 (with uncertainties from 1.9C to 3.7C), and that high end emissions scenarios have become much less likely. journals.sagepub.com...
14361140
Rafał Szabla @rafal-szabla.bsky.social · 18/01/2025
With ERC grants it's best to celebrate the submission, because you never know if you get it. This week I submitted a ERC proposal for the 4th time (5th time counting Synergy). This time a CoG. Then, I took Thursday off to do some snowboarding, for the 1st time in 10 years 🙂.
130
Rafał Szabla @rafal-szabla.bsky.social · 11/01/2025
A very nice news item was recently released by the service Science in Poland (in English). It describes our work on the identification of a new type of photoredox reactions, which can be enabled by sulfur-sulfur (chalcogen bonding) interactions 🙂. scienceinpoland.pl/en/news/news...
scienceinpoland.pl
Polish scientists describe new type of chemical reaction in formation of DNA building blocks
Quantum chemists from the Wrocław University of Science and Technology have described the principles of a completely new class of chemical reactions. It was discovered during research on the formation...
000
Reposted by Rafał Szabla
Science Magazine @science.org · 08/01/2025
"[My adviser] told me that instead of focusing on finding a dream job, I should think about what I am good at and what makes me happy at least 80% of the time. This advice surprised me at first, but it ended up being exactly what I needed to hear." scim.ag/3DHtLCc
scim.ag
To choose a career, I needed to do more than ‘follow my dream’
Practical advice helped this international scientist figure out her post-Ph.D. direction
011624
Reposted by Rafał Szabla
Jean-Philip Piquemal @jppiquem.bsky.social · 06/01/2025
#compchem Good read: Good Practices in Database Generation for Benchmarking Density Functional Theory #compchemsky doi.org/10.1002/wcms...
doi.org
Good Practices in Database Generation for Benchmarking Density Functional Theory
Advancements in DFT over the past three decades have been driven by extensive benchmarking studies. This review outlines best practices in database generation, offering guidance on key methodological...
072
Reposted by Rafał Szabla
Janine George @molecularxtal.bsky.social · 04/01/2025
Okay, can now perform iterative automatic ML potential fitting and finetuning including benchmark (for certain properties). Looks like I can also easily use both GPUs and CPUs in the same workflow despite the fact that they don't have access to the same hard drive. 🙃 But more on Monday.
2232
Rafał Szabla @rafal-szabla.bsky.social · 04/01/2025
We finally had some snowfall and with 5 cm thicker layer I would be nordic skiing already. Still nordic walking in these conditions is a lot of fun ;).
030
Rafał Szabla @rafal-szabla.bsky.social · 31/12/2024
I took a 10 day break from running, but here I am back on the trails for my every year New Year's Eve run. Freezy but fun ;). Legs always feel nice after a break🙂
110
Rafał Szabla @rafal-szabla.bsky.social · 31/12/2024
Does anyone have an easy to use program or web interface for generating simple, yet appealing Gantt charts for grant proposals? I'm playing around with TikZ, albeit with mixed results... The outcome is clear and readable, yet the interface is a bit of pain...
110
Reposted by Rafał Szabla
Philip Bulsink 🇨🇦 @philip.bulsink.ca · 31/12/2024
Saddened to hear of the passing of Sir Fraser Stoddart. I was inspired by a plenary talk he did at a conference a few years back... His embrace of diversity of ideas and scientists should guide us all in our work. #ChemSky
Photo of a slide from a presentation. Text says:

To achieve something that is... ...impactful in contemporary science... ...and to be singled out as a scientist... ...who leaves their mark on science... ...and ultimately technologies, you need to become recognized... ...widely as having...

DONE YOUR OWN THING

This goal means that you make... ...a conscious decision... ...to summon up enough courage... ...to tackle a big problem... ...for which no one has provided... ...a satisfactory scientific answer.

Tackle a BIG PROBLEMPhoto of presentation slide:

Stoddart Research Group

1967-2017

Six Universities

Sheffield, Birmingham, UCLA, Northwestern, Tianjin, University of New South Wales

One Company

ICI Corporate Laboratory

Two Start-Up Companies

Four Countries

UK/US/China / Australia

During 50 years

50 Different Nationalities

among

500 Grad Students / Postdocs

SCIENCE IS GLOBAL / SCIENCE KNOWS NO BOUNDARIES
1268
Reposted by Rafał Szabla
Caroline Lynn Kamerlin ☀️ @lynnkamerlin.bsky.social · 31/12/2024
Really saddened by the news that Sir Fraser Stoddard has just passed away. He was still at Birmingham when I was just starting out as an undergraduate almost 30 years ago. He will be very missed by many.
1232
Rafał Szabla @rafal-szabla.bsky.social · 29/12/2024
Successfully applying for an ERC grant has been one of the biggest challenges that have hoped to overcome. So far, I tried ERC StG 3 times: 1st (perhaps) too early, 2nd unlucky (got funding from another source). I reached the interview stage this year, but my proposal had a couple of weak spots.
130
Reposted by Rafał Szabla
Maren Podewitz @podewitzlab.bsky.social · 15/09/2023
Ever wondered how to generate conformers in explicit solvent? Check out our python tool! pubs.acs.org/doi/10.1021/...
pubs.acs.org
PyConSolv: A Python Package for Conformer Generation of (Metal-Containing) Systems in Explicit Solve...
We introduce PyConSolv, a freely available Python package that automates the generation of conformers of metal- and nonmetal-containing complexes in explicit solvent, through classical molecular dynam...
0133
Rafał Szabla @rafal-szabla.bsky.social · 28/12/2024
So far, Bluesky has been a very refreshing experience 🙂. Nice to see the activity of fellow academics here instead of the content filtered by X's algorithms.
040
Reposted by Rafał Szabla
Narodowe Centrum Nauki @ncn.gov.pl · 27/12/2024
We present a preliminary timeline for calls operated by the National Science Centre in the year 2025. www.ncn.gov.pl/en/aktualnos...
052
Reposted by Rafał Szabla
Forum Akademickie @forumakademickie.bsky.social · 05/12/2024
#3ProcentNaNaukę Dość spychania nauki na margines! Wydatki na ten cel to polska racja stanu. Rząd powinien przedstawić jasny harmonogram dojścia do 3% PKB na naukę i wprowadzić mechanizmy dyscyplinujące, aby nie było łatwo tego planu odrzucić – mówi dla FA @jemielniak.bsky.social
forumakademickie.pl
„Nauka nie może być ukrytym systemem pomocy społecznej” - Forum Akademickie
Dekadami mówiono nam, że nie wypada, że nie jesteśmy górnikami, byśmy wychodzili na ulice. Skończyło się tak, że górnicy wywalczyli swoje kosztem wszystkich obywateli, tymczasem nasze postulaty, gdyby...
0122
Reposted by Rafał Szabla
Raphael Viscarra Rossel @ravr19.bsky.social · 26/12/2024
Good piece by @natureportfolio.bsky.social. The erosion of thinking time—driven by admin, bureaucracy, industry agendas, and unrealistic output targets—stifles curiosity-led science. These pressures undermine innovation and the intellectual freedom vital for real progress. 🧪🌱🌍 #ScienceIsNotBusiness
Scientists need more time to think
14379116
Reposted by Rafał Szabla
Claudia Bonfio @claudiabonfio.bsky.social · 10/12/2024
PhD alert! I have two ERC-funded PhD positions to uncover the chemical origins of life (Oct 2025). *UK fees only*. Projects described here: www.lclu.cam.ac.uk/studentship-... Email me if interested - deadline (PhD in Biochemistry, Uni of Cambridge): Jan 7th! Please share within your networks!
lclu.cam.ac.uk
LCLU PhD Studentships | Leverhulme Centre for Life in the Universe
Applications are now open. The Leverhulme Centre for Life in the Universe and the University of Cambridge are committed to widening participation in postgraduate students at the University of Cambridg...
02216
Rafał Szabla @rafal-szabla.bsky.social · 26/12/2024
Together with Miko Janicki, we showed for the 1st time that S...S chalcogen bonds can act as proxies for directional & selective electron transfer. This could lead to new photoredox chemical reactions! See our work in @angewandtechemie.bsky.social onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
Chalcogen Bonds Enable Efficient Photoreduction of Sulfur‐Containing Heterocycles
Using ab initio molecular dynamics and excited-state calculations we demonstrate that the formation of chalcogen bonds between hydrosulfide anions and an organic heteroaromatic chromophore containing...
030