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Prateek Yadav

@prateekjaiyadav.bsky.social
86 followers 122 following 0 posts

Biologist in the making| BS-MS @iiserpune| MSCA @Cell2_Cell PhD student @siegel-lab.bsky.social in @bmc-lmu.bsky.social | Part of @crc1064.bsky.social Trying to visualize genome architecture during antigenic variation

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Reposted by Prateek Yadav
Faria Tryps Lab @fariatrypslab.bsky.social · 04/02/2026
1/5 How do parasites "shape-shift" to evade our immune system? It’s all about gene selection. Our latest work in @pnas.org identifies a new key player: ESBX. @york.ac.uk @ybri-uoy.bsky.social
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kinetoplastids papers @kinetoplastpapers.bsky.social · 04/02/2026
A factor integrating transcription and repression of surface antigen genes in African trypanosomes pubmed.ncbi.nlm.nih.gov/41632842/
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Jiménez-Ruiz Lab @jimenezruizlab.bsky.social · 08/08/2025
Hi there! Our group at LMU Munich is hiring a postdoc to work on Toxoplasma and Plasmodium. Start: from Oct 1, 2025 | Location: Munich, Germany 1-year contract with extension possible Apply by Aug 31: bit.ly/LMUpostdoc Contact: elena.jimenez@lmu.de
bit.ly
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Siegel Lab @siegel-lab.bsky.social · 18/07/2025
We’re very excited about the potential of IACS for advancing infectious disease research and believe this review from the Goda lab and its collaborators in @natrevbioeng.nature.com highlights its many powerful applications. Check out the full paper here: www.nature.com/articles/s44...
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Jessica Bryant @jessmbryant.bsky.social · 30/06/2025
June was a productive month: brought two things into this world, both of which were great collaborative efforts and about nine months in the making. Check out where we map P. falciparum genome architecture at high resolution with Micro-C here: www.nature.com/articles/s41...
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Siegel Lab @siegel-lab.bsky.social · 23/06/2025
We’re excited to share our review: "Next-generation genetic screens in kinetoplastids", now published in NAR! It covers a range of perturbation methods—from RNAi to prime editing—as well as emerging assay technologies like scRNA-seq and image-activated cell sorting. academic.oup.com/nar/article/...
academic.oup.com
Next generation genetic screens in kinetoplastids
Abstract. The genomes of all organisms encode diverse functional elements, including thousands of genes and essential noncoding regions for gene regulation
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Reposted by Prateek Yadav
kinetoplastids papers @kinetoplastpapers.bsky.social · 19/06/2025
Next generation genetic screens in kinetoplastids pubmed.ncbi.nlm.nih.gov/40530689/
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Sebastian Shaw @millseba.bsky.social · 22/05/2025
🚨 Preprint Alert 🚨 We performed genetic crosses between phenotypically different Cryptosporidium strains and identified genomic loci responsible for their differences! #Cryptosporidium #Genomics #Parasitology #InfectiousDiseases #Preprint #BioRxiv www.biorxiv.org/content/10.1...
biorxiv.org
Genetic crosses reveal genomic loci responsible for virulence in Cryptosporidium parvum infection
The relationship between parasite genotype and pathogenesis is largely unknown for Cryptosporidium, a leading cause of diarrheal disease in children. An array of parasites with similar genomes produce...
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Reposted by Prateek Yadav
<interact> Munich 2025 @interactmunich.bsky.social · 28/03/2025
Just a reminder, if you haven’t already signed up for the workshops to please do so – the link to do so is in your ticket confirmation. Do get in touch with us by email if you encounter any issues with registrations. 📌For more info and to register: www.munich-interact.de
munich-interact.de
Interact Munich 2025
PhD conference, interact 2025, organised in Munich, Germany. Great opportunity for PhD candidates to network with fellow early career researchers and learn about their future career opportunities.
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<interact> Munich 2025 @interactmunich.bsky.social · 28/03/2025
⏳The work week may be almost over but the countdown to (and the registration for 👀) <interact> is in its final stages! We're less than a week away from the big event, and we couldn't be more excited!✨🎉
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Faria Tryps Lab @fariatrypslab.bsky.social · 24/03/2025
Delighted to have been part of this great work driven by @marketanovotna.bsky.social in the Horn lab, showing the power of precision editing to study the direct role of histone modifications on gene expression regulation! Check it out! www.biorxiv.org/content/10.1...
biorxiv.org
Precision-edited histone tails disrupt polycistronic gene expression controls in trypanosomes
Transcription of protein coding genes in trypanosomatids is atypical and almost exclusively polycistronic. In Trypanosoma brucei, approximately 150 polycistrons, and 8000 genes, are constitutively tra...
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<interact> Munich 2025 @interactmunich.bsky.social · 19/03/2025
📢Workshop registrations also open this week on Thursday the 20th of March 2025. Information and link for workshop registrations will be also on our website and spots will be given out on a first-come-first-serve basis (and of course, only to people with a valid ticket 😉).
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<interact> Munich 2025 @interactmunich.bsky.social · 19/03/2025
⏳We've started the countdown to <interact>! Get excited🎉 📢The deadline for ticket sales is next Friday on the 28th of March 2025. There are limited numbers of tickets left - be sure to register early on our website!
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Biomedical Center Munich / LMU Munich @bmc-lmu.bsky.social · 18/03/2025
How Pathogens Outsmart the Immune System! 💡 A new @nature.com study by Maria Colomé-Tatché and @siegel-lab.bsky.social shows how #pathogens control changes in their #cell #surface to evade the #immune #system. 🧪 ➡️ www.med.lmu.de/bmc/en/news/... @lmumuenchen.bsky.social @www.helmholtz-munich.de
med.lmu.de
Antigenic variation: decoding the mechanism controlling antigen activation in trypanosomes
A new study by Maria Colomé-Tatché and Nicolai Siegel shows how pathogens control changes in their cell surface to evade the immune system.
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Helmholtz Munich @helmholtzmunich.bsky.social · 13/03/2025
Antigenic Variation: How Parasites Outsmart the Immune System 🦠 A new study by #HelmholtzMunich & LMU reveals how Trypanosoma brucei controls antigen switching to evade the immune system. 👉 t1p.de/n37tm @lmumuenchen.bsky.social #AntigenicVariation #Trypanosomes #Genomics #InfectiousDiseases
Decoding Antigen Activation in Trypanosomes
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Hopfner Lab @hopfnerlab.bsky.social · 17/03/2025
Happy to share our latest pre-print! We solved the cryoEM structures of human DNA repair factor MRN bound to DNA and to TRF2. Main work of Yilan, Filiz @filizkuybu.bsky.social and Hengjun. Great collab within the @sfb1361.bsky.social and @genecenter-lmu.bsky.social 🧬🔨 www.biorxiv.org/content/10.1...
biorxiv.org
Structural basis for DNA double-strand break sensing by human MRE11-RAD50-NBS1 and its TRF2 complex
The MRE11-RAD50-NBS1 (MRN) complex is a central, multifunctional factor in the detection, signaling and nucleolytic processing of DNA double-strand breaks (DSBs). To clarify how human MRN binds generi...
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Raúl Cosentino @raulcosentino.bsky.social · 12/03/2025
Our paper sheding light on the antigenic selection mechanism in Trypanosoma brucei is out! 🥳 Check it out!🤓
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Siegel Lab @siegel-lab.bsky.social · 12/03/2025
If you are interested in antigenic variation, you may have wondered how parasites ‘select’ which antigen to express next. Our manuscript, just published in Nature, provides some answers! www.nature.com/articles/s41... @lmumuenchen.bsky.social @erc.europa.eu a.eu @nature.com
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Biomedical Center Munich / LMU Munich @bmc-lmu.bsky.social · 12/03/2025
Yesterday, we did a quick spot check, asking our colleagues if they were concerned about current events affecting research freedom. The response was huge-most passers-by expressed their solidarity with the global scientific community 🧪 Imagine if we'd asked more... #StandUpForScience #ScienceMatters
32 BMC scientists each, holding the sign "Stand up for Science"
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Robin Allshire 🇮🇪 🇪🇺✊🏿 ⬆️ Zak’s favourite nucleosome: K9me @allshire-lab.bsky.social · 25/02/2025
Epigenetics Gordon Research Conference. Consider joining us for what will be an excellent, exciting meeting and will be held in Europe for the first time: 10-15 Aug25 Barcelona, Spain. Please repost and apply early - this meeting is popular! www.grc.org/epigenetics-...
grc.org
2025 Epigenetics Conference GRC
The 2025 Gordon Research Conference on Epigenetics will be held in Castelldefels, Barcelona Spain. Apply today to reserve your spot.
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Calvin Tiengwe @tiengwe-tryplab.bsky.social · 26/02/2025
Here it is... an amazing team effort from 3 Masters students and collaborators! Thanks to reviewers for constructive comments. Plasmids available here: www.addgene.org/search/catal... royalsocietypublishing.org/doi/10.1098/...
royalsocietypublishing.org
A high-throughput protein tagging toolkit that retains endogenous untranslated regions for studying gene regulation in kinetoplastids | Open Biology
Kinetoplastid parasites cause diseases that threaten human and animal health. To survive transitions between vertebrate hosts and insect vectors, these parasites rely on precise regulation of gene exp...
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Reposted by Prateek Yadav
<interact> Munich 2025 @interactmunich.bsky.social · 24/02/2025
📢 Abstract submissions for student talks for <Interact>2025 have officially closed! We'd like to massively thank you for all your submissions! By popular request, we have extended the submissions for posters abstracts by an extra week! Sign up by visiting us at: www.munich-interact.de/register
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Reposted by Prateek Yadav
Meissner Lab @meissnerlab.bsky.social · 19/02/2025
Happy to share this with you! Together with the Längst lab (Uni Regensburg) we characterized PfSnf2L as essential regulator for „just in time“ transcription. A big thanks to our collaboration partners (Marti lab) and Llinas lab (@llinaslab.bsky.social). www.nature.com/articles/s41...
nature.com
Plasmodium blood stage development requires the chromatin remodeller Snf2L - Nature
Plasmodium falciparum Snf2L is an ISWI-related ATPase that actively repositions P. falciparum nucleosomes in vivo.
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<interact> Munich 2025 @interactmunich.bsky.social · 21/02/2025
Don’t miss out on this deep dive into protein structure, design, and function—where science meets innovation! 💡 🔗 More info: www.munich-interact.de #proteindesign #ai #biophysics #deeplearning #keynote #scienceinnovation
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<interact> Munich 2025 @interactmunich.bsky.social · 21/02/2025
From computational design to wet lab biophysical characterization, he’ll break down how machine learning is revolutionizing protein science—pushing the boundaries of what’s possible beyond nature! 🌍
munich-interact.de
Interact Munich 2025
PhD conference, interact 2025, organised in Munich, Germany. Great opportunity for PhD candidates to network with fellow early career researchers and learn about their future career opportunities.
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<interact> Munich 2025 @interactmunich.bsky.social · 21/02/2025
We’re thrilled to welcome Prof. Dr. Lukas Milles (@lfmilles.bsky.social) as our keynote speaker! With a background in de novo protein design, deep learning, and biophysics, his talk will dive into the cutting-edge world of AI-driven protein engineering. 🧪
munich-interact.de
Interact Munich 2025
PhD conference, interact 2025, organised in Munich, Germany. Great opportunity for PhD candidates to network with fellow early career researchers and learn about their future career opportunities.
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Biomedical Center Munich / LMU Munich @bmc-lmu.bsky.social · 12/02/2025
📣 Deadline coming up soon! Don't forget to register for the INTERACT MUNICH 2025 conference! 📅 3 - 4 April 2025 📍 Biomedical Center (BMC), LMU 💬 Young life scientists 📝 Abstract deadline: 24.02.2025 ➡️ lnkd.in/eKcwZJwV #interact #munich #interact2025 #conference #PhD #Master #Postdoc
Blue picture with text, saying registration is open and researchers can sign up for a poster or talk at the Interact Munich Conference 2025 at the Biomedical Center Munich.
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<interact> Munich 2025 @interactmunich.bsky.social · 29/01/2025
🌟 <interact> 2025 Registration Now Open! 🌟 Prepare to meet our fantastic keynote speakers while enjoying inspiring networking with the participants 🧬✨ Explore and celebrate the impact of our research on the world around us alongside like-minded scientists. Let the <interact>ion begin!!
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Meghana Oak @meghana-oak.bsky.social · 22/01/2025
✨ Excited to share my latest preprint on how H3K4 methylation promotes transcriptional memory from gametes to embryos across a transcriptionally silent window — crucial for proper zygotic genome activation and development. 🐸🧬✨ 📄 Check it out here:
doi.org/10.1101/2025... 👇 Highlights below
doi.org
H3K4 methylation-promoted transcriptional memory ensures faithful zygotic genome activation and embryonic development
In the life of a vertebrate embryo, gene expression is initiated for the first time at zygotic genome activation (ZGA). Maternally expressed transcription factors present in the embryo are essential f...
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Siegel Lab @siegel-lab.bsky.social · 27/12/2024
Our paper is out! We used Micro-C to study the 3D genome organization at high resolution in trypanosomes and revealed an extensive network of inter-chromosomal transcription hubs. read more at doi.org/10.1038/s414... 🧬 Great work from @claudiarabu.bsky.social @naturecomms.bsky.social
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Claudia Rabuffo @claudiarabu.bsky.social · 24/12/2024
Looking for a nice read over the holidays? Check out my paper, out now in @naturecomms.bsky.social! Using Micro-C in trypanosomes, we found an extensive network of interactions between polymerase-class specific loci. doi.org/10.1038/s414... 🧬
doi.org
Inter-chromosomal transcription hubs shape the 3D genome architecture of African trypanosomes - Nature Communications
Decoding the role of inter-chromosomal DNA-DNA interactions remains challenging. Here, the authors use Micro-C to study the T. brucei genome architecture at high resolution and reveal an intricate net...
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CRC 1064 Chromatin Dynamics @crc1064.bsky.social · 09/12/2024
Join us for the Paris-Munich Epigenetics Workshop & Symposium, April 9-11, 2025, Université Paris Cité. The symposium is open for experts and newcomers in the field. Newcomers are encouraged to apply for the one-day WORKSHOP, April 9. See program and registration, free of charge: shorturl.at/mAaWn
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<interact> Munich 2025 @interactmunich.bsky.social · 05/12/2024
🔍 Stay tuned for updates on: ✨ Keynote speakers ✨ Workshops & sessions ✨ Networking opportunities Join us for a celebration of creativity, collaboration, and discovery! 🌐 🔗 Learn more: munich-interact.de
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<interact> Munich 2025 @interactmunich.bsky.social · 05/12/2024
<interact> is a unique international scientific conference organised by PhD candidates for early career researchers - Master students, PhD students and PostDocs! We aim to bring together highly dedicated young life sciences researchers from the Munich area and wider.
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<interact> Munich 2025 @interactmunich.bsky.social · 05/12/2024
🌟 Welcome to <interact> 2025 🌟 We’re thrilled to announce the most exciting student-organised scientific conference is back in 2025! 🎉 📅 Mark your calendars: 🗓️ April 3-4, 2025 📍 Venue: Biomedical Center (BMC), LMU Munich
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