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Dr Simon Goodman

@phoca-sapiens.bsky.social
3.4K followers 2.1K following 274 posts

Evolutionary & conservation genomics, eDNA, parasites, disease ecology, marine mammal conservation. Seal nerd, co-chair IUCN Pinniped specialist group. University of Leeds, UK. 🦭🐳🧬🧪🌍 www.goodmanlab.org

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Reposted by Dr Simon Goodman
Global Food and Environment Institute @globalfoodleeds.bsky.social · 30/09/2026
Dr Alan Javier Hernandez Alvarez & Dr Oscar Abel Sánchez-Velázquez, University of Leeds have written a blog on their exciting new research project 'AquaRoots'. 👇
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ERGA - European Reference Genome Atlas @ergabiodiv.bsky.social · 28/09/2026
📘 Are you curious about biodiversity genomics? Check our Connections Booklet - a friendly starting point for discovering the field. Developed together with @iboleurope.bsky.social @biogeneurope.bsky.social 🔗 www.erga-biodiversity.eu/post/connect... @ebpgenome.bsky.social
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Reposted by Dr Simon Goodman
Alison Fisk @alisonfisk.bsky.social · 26/09/2026
An ancient and magical amber bear 🐻 ✨ Carved some 10,000 years ago, it washed up on a beach at Fanø in Denmark from a submerged Mesolithic settlement under the North Sea. National Museum of Denmark in Copenhagen 📷 by me #Archaeology
My photo shows a small and ancient figurine of an amber bear carved some 10,000 years ago during the Danish Mesolithic period. The museum lighting makes the amber glow translucent orange against a dark display case background. The bear is displayed on a small metal stand viewed in profile facing right. The ears, muzzle, and mouth are defined. The neck has a polished groove suggesting it was once suspended on a cord. The characteristic shoulder hump of a brown bear is clearly defined. There are some finely incised horizontal lines along the belly. The legs are incomplete. Length 6.5cm. Amber has many properties which may have been associated with 'magic' for ancient peoples. For example, when rubbed against fur, amber produces static electricity which can give off sparks in the dark, make hair stand on end, and attract small things towards it.
The bear was found in 1991 on a west coast beach of the Danish North Sea island of Fanø. It is one of a small number of amber animal figurines from the Baltic Sea region which have been assigned to the Mesolithic period by means of a typo-chronological approach and /or other contextual information.
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Rob Knell @robknell.bsky.social · 24/09/2026
If you’re a scientist then you *must* watch The Love Hypothesis on Amazon Prime: a fascinating documentary about what *really* goes on in our labs. This educational clip is likely to feature in stats lectures for years to come. 🧪
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Communications Earth & Environment @commsearth.nature.com · 22/09/2026
🌊Combining #Indigenous Knowledge with #ArcticOcean modelling can strengthen climate science while supporting community needs, creating ongoing, two-way partnerships.🧪 👉Read more here: www.nature.com/articles/s43...
nature.com
Indigenous Knowledge and observations improve Arctic Ocean model skill and relevance - Communications Earth & Environment
Combining Indigenous Knowledge with Arctic Ocean modeling can strengthen climate science while supporting community needs, creating ongoing, two-way partnerships.
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Reposted by Dr Simon Goodman
Corey Callaghan @coreytcallaghan.bsky.social · 23/09/2026
Do you use #iNaturalist data in research—or advise students who do? We put together a practical guide to using iNaturalist data in scientific research, covering how to access, acquire, analyze, and attribute the data, with examples in R and Python. Paper: doi.org/10.1093/bios... #ecology
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Colin Carlson @colincarlson.bsky.social · 23/09/2026
What's behind this tidal wave of epidemics? In the largest study ever conducted on emerging infectious diseases, we show that the popular explanation - "our relationship with nature is out of balance" - doesn't hold up. Out now in Nature, after half a decade of work: www.nature.com/articles/s41...
nature.com
The anthropogenic fingerprint on emerging infectious diseases - Nature
Emerging infectious disease outbreak risks are ubiquitous worldwide, and highest in landscapes where people, livestock and fragmented natural ecosystems coexist, but detection and data ...
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Bart⚓️ @bartgonnissen.bsky.social · 23/09/2026
The Facial Expressions of Tethys by artist Julius von Bismarck. A suspended high-sea buoy that moves in real time. Sensors on a twin buoy out in the Atlantic Ocean send live satellite data to motors inside the museum. This makes the indoor buoy copy the exact, real-time movements of the ocean waves.
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Michael Hiller @hillermich.bsky.social · 23/09/2026
Happy to share results of the @bat1kgenomes.bsky.social phase 1, providing reference genomes covering 21 bat families. New insights into bat phylogeny, ancestral genome reconstruction, European origin & ancestral echolocation. Great work by a team of 100+ colleagues www.nature.com/articles/s41...
nature.com
Reference genomes and fossils revise bat family phylogeny and biogeography - Nature
An updated phylogeny of bats is presented, based on new genome assemblies and many ancient fossils and including all known bat families.
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Methods in Ecology and Evolution @methodsinecoevol.bsky.social · 21/09/2026
New blog post! 🚨 Read our new blog post 'From replicate detection to DNA concentration: What can ddPCR tell us about sedaDNA metabarcoding?' 🧬🐟️ 🧪 Find it here 🌏️ 👇️ buff.ly/q4r1ASq
methodsblog.com
From replicate detection to DNA concentration: What can ddPCR tell us about sedaDNA metabarcoding?
Post provided by Elena Baños Lara I am currently completing my PhD at the Centre for Advanced Studies of Blanes (CEAB-CSIC) in Spain, where I use environmental and sedimentary ancient DNA to explor…
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Reposted by Dr Simon Goodman
Martin Pacesa @martinpacesa.bsky.social · 21/09/2026
ʙɪɴᴅᴄʀᴀꜰᴛ2 is out, and we're not waiting for the paper. The full code drops today, free for academic and industry use. We're releasing it early so you can start designing right now, and bring its full power to the current Adaptyv competition. github.com/PacesaLab/Bi...
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Proceedings of the National Academy of Sciences @pnas.org · 18/09/2026
How local is local adaptation? Researchers transplanted more than 700 lab-raised stickleback fish among lake and stream environments, finding that adaptation to specific sites can outweigh adaptation to broader habitat differences. In PNAS: ow.ly/yTOk50ZP97o
Two threespine stickleback fish. Image credit: Marius Roesti.
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Annie Leymarie @annieleymarie.bsky.social · 19/09/2026
Where you'll learn about some of the most adorable of spiders, who can look back at you with their two large front-facing SpongeBob eyes...
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Climate Risk Economics @climateeconomics.bsky.social · 16/09/2026
On climate change, "The choice is not between paying or not paying. It is between paying earlier for mitigation and adaptation, or paying more later for disaster relief, reconstruction, food insecurity and displaced populations”... www.ft.com/content/9e7a...
ft.com
A hotter planet meets dearer money
Rising borrowing costs mean new financing instruments will be needed for developing economies to deal with climate change
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Oded Rechavi @odedrechavi.bsky.social · 15/09/2026
Departmental seminars when there's no pizza
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Biodiversity Genomics Europe plus (BGE+) @biogeneurope.bsky.social · 14/09/2026
New @biogeneurope.bsky.social online course: Sampling for reference DNA barcodes (26 Oct, 10-15h CET). Learn all the necessary steps to ensure a high-quality barcode reference library biodiversitygenomics.eu/training/sam... @iboleurope.bsky.social @ergabiodiv.bsky.social @eurotaxonomy.cetaf.org
biodiversitygenomics.eu
Sampling for reference DNA barcodes - BGE+
Sampling specimens for DNA barcode reference generation
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Reposted by Dr Simon Goodman
Phil Martin @philmartin.bsky.social · 11/09/2026
The next paper in our special feature by @ashsimkins.bsky.social in @jappliedecology.bsky.social suggests that many conservation actions used for threatened species are likely effective. However, we lack evidence for key actions relating to policy, enforcement, & communication. tinyurl.com/2y5p3vxp
tinyurl.com
Effectiveness of current and potential conservation actions for amphibians, birds and mammals
Our study demonstrates the power of combining differently-sourced and compiled datasets to evaluate the likely effectiveness of ongoing conservation strategies and identify future needs. Our findings...
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Journal of Evolutionary Biology @jevbio.bsky.social · 11/09/2026
Chromosomal inversions are both engines of repeatability and innovation. They drive parallel genetic divergence between snail ecotypes across Europe, while also harbouring local variants that contribute to site-specific trait variations and adaptation: doi.org/10.1093/jeb/... Pajot et al 2026
doi.org
Inversions support both parallel and location-specific adaptations in snail ecotypes
Abstract. Replicated hybrid zones between ecotypes established over environmental gradients provide an opportunity to study the genomic architecture of bar
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Biodiversity and Ecosystem Services Network (BES-Net) @besnet.world · 14/09/2026
New research funding will focus on drivers of biodiversity loss in the Amazon, Congo Basin and Coral Triangle. @gcbcbiodiversity.bsky.social's fourth research call draws on the @ipbes.net Transformative Change Assessment. Applications are expected to open on 19 October.
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Joseph W. BRRRAAAIIINNNSSS @josephwb.bsky.social · 12/09/2026
Reading through manuscript reviews (」><)」
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Christos Mammides @cmammides.bsky.social · 12/09/2026
Emerging applications of large language models in ecology and conservation science #AI #Biodiversity #Conservation conbio.onlinelibrary.wiley.com/doi/10.1111/...
conbio.onlinelibrary.wiley.com
Emerging applications of large language models in ecology and conservation science
Large language models (LLMs) mark a major development in artificial intelligence, with potentially transformative implications for ecology and conservation science. Built on advanced deep-learning ar....
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Reposted by Dr Simon Goodman
Schmidt Ocean Institute @schmidtocean.bsky.social · 11/09/2026
Fishy Friday: Bathypterois sp., a tripod fish. Solitary and stationary, these deep-sea denizens perch above the seafloor using specialized fin rays and face into the current. When an unsuspecting copepod or other tiny crustacean drifts by, this animal is set to snack. #Doldrums, 2,040 meters
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Dr Simon Goodman @phoca-sapiens.bsky.social · 10/09/2026
And this news article has good coverage of some of the issues and discussions on Caspian Sea level decline at Climate Week 4 caliber.az/en/post/casp... #CaspianSea #ClimateChange
caliber.az
Caspian in retreat: A growing crisis for the region - Analysis by Khazar Akhundov
The Caspian Sea has been steadily losing water for nearly a quarter of a century, with the decline accelerating noticeably in recent years. Climate change — including...
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Reposted by Dr Simon Goodman
Dr James Rule @palaeo-jrule.bsky.social · 10/09/2026
New paper lead by Siobhan Pearson, exploring morphological differences between fur seal and sea lion crania 🦭 We found that allometry explains most differences between the two groups. This project originated as Siobhan's Masters project at @nhm-london.bsky.social doi.org/10.1111/mms....
doi.org
Quantifying the Morphological Differences Between Fur Seals and Sea Lions
The eared seals (family Otariidae) are divided into fur seals and sea lions, despite a lack of cladistic support for these groups. The division is primarily based on hair morphology, and it is unknow...
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Reposted by Dr Simon Goodman
Ana Ramón-Laca @lacadna.bsky.social · 10/09/2026
New #eRNA paper in MethodsEcology&Evolution 📣 We tested field-ready protocols for eRNA. Targeting high-copy structural transcripts (12SrRNA) ⬆️ 🐟 detection sensitivity in aquatic ecosystems. #eDNA #eRNA #ConservationGenomics #Biomonitoring #fisheries Check it out here: doi.org/10.1111/2041...
doi.org
Enhanced fish detection sensitivity in aquatic systems using environmental RNA
Environmental RNA (eRNA) can potentially augment the biological monitoring ability of the established environmental DNA (eDNA) application in conservation. Despite faster degradation, environmenta...
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Dr Simon Goodman @phoca-sapiens.bsky.social · 10/09/2026
More on Climate Week here: unfccc.int/climate-week...
unfccc.int
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Dr Simon Goodman @phoca-sapiens.bsky.social · 10/09/2026
This week the 4th Climate Week (CW4) of the UN Framework Convention on Climate Change (UNFCCC) is on in Baku, Azerbaijan. A major focus is how to address the Caspian Sea's drastically falling water level. Here's why everyone is so concerned 🌍🧪🦑🦭 doi.org/10.1038/s432... #ClimateChange #Sustainability
Maps showing locations of coastal settlements, industrial infrastructure and commercial fishing activity relative to Caspian sea level decline scenarios.
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bioRxiv Ecology @biorxiv-ecology.bsky.social · 07/09/2026
Abundance and distribution of ice-associated seals in the western Bering Sea and Sea of Okhotsk, 2012-2013 www.biorxiv.org/content/10.64898/20…
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Biodiversity Heritage Library @biodivlibrary.bsky.social · 07/09/2026
On #ThreatenedSpeciesDay, our latest #BHLat20 post explores some of BHL’s most precious treasures: extinct species descriptions. BHL’s historic literature preserves information about what we’ve lost, and what we can still save: blog.biodiversitylibrary.org/2026/09/exti... 🧪 📖
An historic illustration of two thylacines (dog-like marsupials with black stripes across their backs)
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Good Trailcams @goodtrailcams.bsky.social · 06/09/2026
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Alex Tomlinson @alextomlinson.com · 17/06/2026
Flat illustration of a Northern Gannet presenting the gift of a beak full of seaweed to their mate.
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Dr Simon Goodman @phoca-sapiens.bsky.social · 04/09/2026
This work comes from the PhD thesis of Rebecca Thomas exploring disease threats to endangered turtle doves, and was done in collaboration with @bioscienceleeds.bsky.social @jennycdunn.bsky.social, @rspbscience.bsky.social, @naturalengland.bsky.social, and @nerc-eof.bsky.social
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Dr Simon Goodman @phoca-sapiens.bsky.social · 04/09/2026
Just out: Supplementary feeding of wild birds on farmland can be an important transmission risk for severe avian parasites such as Trichomonas gallinae, suggesting a rethink is needed on how this conservation practice is managed 🪱🧪🌍🐦 doi.org/10.1111/mec.... @molecology.bsky.social
doi.org
Multiple Strains of <fi>Trichomonas gallinae</fi> are Widespread in Reservoir Hosts and Environmental Resources in <fc>UK</fc> Farmland
Understanding transmission routes of parasites and pathogens is critical for the development of control measures and mitigation of impacts on host populations. Trichomonas gallinae is a widespread pa...
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Dr. Earyn McGee @afroherper.bsky.social · 04/09/2026
A few Gila monster shot glasses fresh out the kiln. I’m obsessed with this concept! #lizard #pottery #ceramics #art
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Dr Jenny Dunn @jennycdunn.bsky.social · 04/09/2026
New paper @molecology.bsky.social!! "Multiple Strains of Trichomonas gallinae are Widespread in Reservoir Hosts and Environmental Resources in UK Farmland"- congratulations to Rebecca Thomas on the last paper from her PhD! @phoca-sapiens.bsky.social #birdfeed #parasites dx.doi.org/10.1111/mec....
dx.doi.org
Multiple Strains of <fi>Trichomonas gallinae</fi> are Widespread in Reservoir Hosts and Environmental Resources in <fc>UK</fc> Farmland
Understanding transmission routes of parasites and pathogens is critical for the development of control measures and mitigation of impacts on host populations. Trichomonas gallinae is a widespread pa...
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Becky Taylor @beckystaylor.bsky.social · 01/09/2026
Been wondering how well runs of homozygosity can predict inbreeding depression? Read our new meta-analysis where we show a significant relationship between ROH and fitness across taxa #popgen #consgen: onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Runs of Homozygosity Predict Inbreeding Depression Across Taxa: A Systematic Review and Meta‐Analysis
Measuring inbreeding via runs of homozygosity (ROH) captures realized autozygosity and can infer inbreeding timing through ROH length. A growing body of literature links the proportion of the genome ....
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Tom Near @tjnear.bsky.social · 29/08/2026
1/11 🐟 2nd new preprint today from @chasedbrownstein.bsky.social We investigated how losing the swim bladder, the organ that most fishes use to control their buoyancy, has shaped the diversity of ray-finned fishes over 90 million years of Earth history. The results surprised us. 🧵
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Science Magazine @science.org · 29/08/2026
When stressed, this comb jelly reverts to a larval form, then matures again when favorable conditions return. Learn more: scim.ag/4gmdt2J #ScienceMagArchives
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Dr Simon Goodman @phoca-sapiens.bsky.social · 28/08/2026
The Muppets' Christmas Cloaca is the best version...
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Dr. Scott Hartman - but not THAT kind of doctor @skeletaldrawing.bsky.social · 28/08/2026
Have you ever wanted to visually compare the size of your favorite extinct animals? Now you can, as I'm launching an interactive size comparison tool on my website. Give it a try and let me know what you think: www.skeletaldrawing.com/compare/
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Dr Simon Goodman @phoca-sapiens.bsky.social · 28/08/2026
Twelve Angry Cloacas
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Dr Simon Goodman @phoca-sapiens.bsky.social · 28/08/2026
Return of the Cloaca
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Dr Simon Goodman @phoca-sapiens.bsky.social · 28/08/2026
The Cloaca Strikes Back
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Dr Simon Goodman @phoca-sapiens.bsky.social · 28/08/2026
Cloaca Wars: A new hope
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Ian M. Mackay, PhD (he/him) 🦠🤧🧬📑🦟🧀 @mackayim.bsky.social · 28/08/2026
First #H5N1 bird flu detection confirmed in Australian dolphin "The state's chief veterinary officer Dr Skye Fruean said it was expected the dolphin had "eaten a bird or interacted closely with a wild bird". "We know that dolphins are highly susceptible" www.abc.net.au/news/2026-08...
abc.net.au
First H5N1 bird flu detection confirmed in Australian dolphin
South Australian authorities confirm the country's first H5N1 bird flu in a common dolphin, which was found dead on the Fleurieu Peninsula.
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The International Biogeography Society @biogeography.bsky.social · 26/08/2026
New Perspectives piece in Frontiers of Biogeography: introducing the World of Crayfish, a knowledge interface for curated crayfish occurrence data. Besides crayfish, this piece explores the growing value of taxon-tailored knowledge as biodiversity data accumulates: doi.org/10.21425/fob...
doi.org
Biodiversity knowledge through web design: the World of Crayfish® platform
Biodiversity databases have expanded dramatically over the past two decades, turning scattered observations into vast digital repositories of species occurrence records. General-purpose infrastructure...
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Biodiversity Genomics Europe plus (BGE+) @biogeneurope.bsky.social · 27/08/2026
By leveraging #DNAbarcoding for species discovery and #fullgenome for understanding #geneticdiversity, @biogeneurope.bsky.social establishes standards for countries to generate comparable, actionable data: biodiversitygenomics.eu/genomics-at-... @ergabiodiv.bsky.social @iboleurope.bsky.social
biodiversitygenomics.eu
Genomics at Your Service: Nature and Society - BGE+
Species discovery, yes. But also genetic diversity Protecting European biodiversity requires not only a detailed assessment of the species present in an ecosystem, but also a full characterization of ...
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Dr Simon Goodman @phoca-sapiens.bsky.social · 26/08/2026
Love a good bat ectoparasite!
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Liam U. Taylor @liamtaylor.bsky.social · 25/08/2026
In French Guiana we saw this moth with little fake leaf holes in its wings and I think about it often
beautiful little moth in French Guiana
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