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NYAGIM

@nyagim.bsky.social
25 followers 34 following 10 posts

Posting new opportunities & breakthroughs in & around NYC. www.meetup.com/new-york-area-group-… Managed by @markpolk.io.

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NYAGIM @nyagim.bsky.social · 02/02/2026
Join NYAGIM for our 2026 Q1 event to hear a grounded, experience-based perspective from Dr. Georgia McGaughey Nicholls on the real role of AI in drug discovery and connect with the local computational chemistry and informatics community. March 18 @ 6 PM. RSVP: www.meetup.com/new-york-are...
meetup.com
Is AI Capable of Real-World Drug Discovery? Lessons From My Career, Wed, Mar 18, 2026, 6:00 PM | Meetup
AI has transformed many areas of science, but its impact on real-world small molecule drug discovery remains nuanced. Many discovery programs operate in low-data regimes wh
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NYAGIM @nyagim.bsky.social · 28/11/2025
Join us for the NYAGIM 2025 Q4 event, supported by Schrödinger, featuring Huafeng Xu from Atommap, to deliver a talk on computational drug discovery. Wednesday, Dec 10 at 6:00 PM. RSVP: www.meetup.com/new-york-are...
meetup.com
Beyond binding: designing molecules for biological function, Wed, Dec 10, 2025, 6:00 PM | Meetup
Join us for the NYAGIM 2025 Q4 event, supported by Schrödinger, featuring Huafeng Xu from Atommap, to deliver a talk on computational drug discovery. **Abstract** Emerging
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John Chodera @jchodera.bsky.social · 27/10/2025
My institution---the Sloan Kettering Institute, the basic science arm of the Memorial Sloan Kettering Cancer Center---is hiring new faculty this cycle! Applications close Nov 15. www.mskcc.org/research/ski...
mskcc.org
Faculty Positions
The Sloan Kettering Institute is seeking innovative scientists to join our faculty.
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Mohammed AlQuraishi @moalquraishi.bsky.social · 28/10/2025
OpenFold3-preview (OF3p) is out: a sneak peek of our AF3-based structure prediction model. Our aim for OF3 is full AF3-parity for every modality. We now believe we have a clear path towards this goal and are releasing OF3p to enable building in the OF3 ecosystem. More👇
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NYAGIM @nyagim.bsky.social · 04/09/2025
Join us for the NYAGIM 2025 Q3 event, featuring Dan Sindhikara on recent advances and persistent challenges in the computational design of macrocyclic peptides. Sep. 16 at 6 PM. RSVP: www.meetup.com/new-york-are...
meetup.com
Computational Design of Macrocyclic Peptides Containing Non-Natural Amino Acids , Tue, Sep 16, 2025, 6:00 PM | Meetup
Join us for the NYAGIM 2025 Q3 event, supported by Cresset and the New York Academy of Sciences, featuring Dan Sindhikara on recent advances and persistent challenges in th
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Daniel Keedy @dkeedy.bsky.social · 13/08/2025
Summer 2025 #keedylab news round-up: come read about what we did on our summer vacation! keedylab.org/news/ Associated with this website update, I also embedded the lab's Bluesky feed on the website's news page -- thus creating an infinite cycle of delightful lab news links 🔁 💯
keedylab.org
News | Keedy Lab
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David A Knowles @davidaknowles.bsky.social · 20/08/2025
Shiny new probabilistic model, gruyere 🧀, for powering up rare variant associations w/ DL effect prediction! We find novel associations for Alzheimer's disease, e.g. nuclear pore protein NUP93 in microglia. Big thanks to NIH/NIA/ADSP and Anjali for the hard work! authors.elsevier.com/a/1ldzwgeXDzHj
authors.elsevier.com
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John Chodera @jchodera.bsky.social · 23/08/2025
Check out how OpenADMET is aiming to transform drug discovery! 🚀
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Daniel Keedy @dkeedy.bsky.social · 27/05/2025
New @biorxiv-biophys.bsky.social preprint from the #keedylab! 👀 www.biorxiv.org/content/10.1... How do related proteins perform distinct functions despite sharing a similar structure?...
biorxiv.org
Mapping allosteric rewiring in related protein structures from collections of crystallographic multiconformer models
How do related proteins with a common fold perform diverse biological functions? Although the average structure may be similar, structural excursions from this average may differ, giving rise to allos...
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NYAGIM @nyagim.bsky.social · 13/05/2025
CORRECTION: The speaker is David J. Huggins. Please RSVP: www.meetup.com/new-york-are...
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NYAGIM @nyagim.bsky.social · 12/05/2025
May 22: Hear from Ayşegül Özen about a groundbreaking drug discovery effort recently published in Nature, showcasing the use of advanced CADD techniques to develop a novel antiviral targeting SARS-CoV-2. RSVP: www.meetup.com/new-york-are...
meetup.com
Computational Design of First-in-Class Inhibitors Targeting SARS-CoV-2 NSP14, Thu, May 22, 2025, 6:00 PM | Meetup
Join the NYAGIM 2025 Q2 event as we spotlight a groundbreaking drug discovery effort recently published in *Nature*, showcasing the use of advanced computer-aided drug desi
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pilarcossio.bsky.social @pilarcossio.bsky.social · 30/03/2025
Check out our recent preprint 👇on counting particles to estimate populations in #cryoem: noise can bias the estimates; with Luke Evans & a great team.
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OMSF @omsf.io · 01/04/2025
the longest journey begins with a single step. luckily for us, @arianaclerkin.bsky.social is writing hers down! read the first PLUMB blab of many below, and follow along as Ariana builds an open comp.chem project from the ground up.
omsf-blog.ghost.io
PLUMB blab #1: We need better benchmarks for computer-aided drug design
Written by: Ariana Brenner Clerkin, PhD Welcome to a new series on the OMSF blog: PLUMB blab! This series will take you behind the scenes of PLUMB (Protein-Ligand Unified Metrics Benchmark), an open-...
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NYAGIM @nyagim.bsky.social · 18/03/2025
Happening today with @sonyahanson.bsky.social!
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Neel Shah @nshahlab.bsky.social · 03/03/2025
Excited to share this new preprint from our group, led by grad student Anne van Vlimmeren! We used TurboID proximity labeling to explore how mechanistically diverse mutations in the phosphatase SHP2 differentially alter protein-protein interactions and localization. www.biorxiv.org/content/10.1...
biorxiv.org
Proximity-labeling proteomics reveals remodeled interactomes and altered localization of pathogenic SHP2 variants
Missense mutations in PTPN11, the gene encoding the protein tyrosine phosphatase SHP2, are common in several developmental disorders and cancers. While many SHP2 mutations disrupt auto-inhibition and ...
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Sukrit Singh @sukritsingh92.bsky.social · 10/03/2025
This work is now published in J Phys Chem B! Check out our work showing that simulations predict the impact of distal mutations on kinase-inhibitor binding, and our experimental NanoBRET dataset of 94 kinase mutations that provide a benchmark for future methods. Link: pubs.acs.org/doi/full/10....
Illustration showing a pipeline for predicting the impact of ABL1A kinase domain mutations on inhibitor binding. On the left, icons labeled 'Physics-based simulations' and 'Data-driven methods' feed into 'Prospective ΔΔG Predictions.' On the right, a 3D ribbon model of the ABL1A kinase domain (gray) highlights clinically observed mutations in orange and an inhibitor in blue.
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NYAGIM @nyagim.bsky.social · 06/03/2025
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NYAGIM @nyagim.bsky.social · 06/03/2025
Please join us for our next event on March 18, 2025, with Dr. Sonya Hanson: "Progress and Pitfalls in Free Energy Landscapes from Cryo-EM." Full details and RSVP: www.meetup.com/new-york-are....
Poster for event with text:

March 18th, 2025
6:00pm - 8:00pm EST

NYAGIM Event
(New York Area Group For Informatics and Modeling)

Join the NYAGIM Community and network with professionals in the field of in silico methods for drug discovery from both academia and industry

Progress and Pitfalls in Free Energy Landscapes from Cryo-EM
Dr. Sonya Hanson
(Research Scientist, Flatiron Institute)

Location (in-person only)
Simons Center @ New York University
Silver 411
31 Washington Pl, New York, N.Y. 10003

Register
Please RSVP on NYAGIM Meetup page by March 15th, 2025

A QR code points to this link: https://www.meetup.com/new-york-area-group-for-informatics-and-modeling/events/306573383/.
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David A Knowles @davidaknowles.bsky.social · 27/01/2025
#MLCB2025 will be Sept 10-11 at @nygenome.org in NYC! Paper deadline June 1st & in-person registration will open in May. Please sign up for our mailing list groups.google.com/g/mlcb/ for future announcements. More details at mlcb.github.io. Please RP!
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John Chodera @jchodera.bsky.social · 21/02/2025
Excited to share what I’ve been working on with @tkaraletsos.bsky.social to transform the field of drug discovery with atomistic foundation simulation models! I could not be more thrilled to be working with this dream team. achira.ai
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Alisia Fadini @alisiafadini.bsky.social · 24/02/2025
Structural biology is in an era of dynamics & assemblies but turning raw experimental data into atomic models at scale remains challenging. @minhuanli.bsky.social and I present ROCKET🚀: an AlphaFold augmentation that integrates crystallographic and cryoEM/ET data with room for more! 1/14.
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NYAGIM @nyagim.bsky.social · 13/02/2025
NYC AI4Chemistry Summit 2025: June 25–27, 2025. wp.nyu.edu/sccpc/nyc-ai...
wp.nyu.edu
Organizers are Yingkai Zhang, Glen Hocky, and Stefano Martiniani of NYU’s Simons Center for Computational Physical Chemistry.
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Oli Clarke @olibclarke.bsky.social · 12/02/2025
Registration is now open for the 2025 NYC CryoEM meeting, organized by Bill Rice (NYU) & @fravallese.bsky.social (CUNY/ASRC) Always a great meeting with lots of new #cryoem work by rising stars in/around NYC Max 140 people so register now (it’s free)!
med.nyu.edu
Fifth New York Area Cryo-EM Meeting | NYU Langone Health
Join the 2025 Cryo-EM & Cryo-ET Meeting at NYU Langone! Share unpublished work, discuss breakthroughs, and tackle challenges. June 25. Register now!
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NYAGIM @nyagim.bsky.social · 09/02/2025
We are a growing community of greater New York City area scientists focused on the advances of in silico methods related to drug discovery, and how they increasingly impact and transform pharmaceutical research. Learn more: www.meetup.com/new-york-are...
meetup.com
New York Area Group for Informatics and Modeling (NYAGIM) | Meetup
We are a growing community of greater New York City area scientists focused on the advances of in silico methods related to drug discovery, and how they increasingly impact and transform pharmaceutica...
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