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Minhuan Li

@minhuanli.bsky.social
57 followers 20 following 11 posts

CCM @ Flatiron Institute, Prev PhD @ Hekstra Lab, Harvard minhuanli.github.io

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Reposted by Minhuan Li
Reciprocal Space Station @rs-station.bsky.social · 04/09/2026
1/5 Ensembles are hot in structural biology! But here’s a question we don’t ask enough: What information survives measurement and processing? In our latest blog, @pilarcossio.bsky.social @emilthomasen.bsky.social and @minhuanli.bsky.social have a think 🤔: rs-station.github.io/2026/08/31/a...
rs-station.github.io
Are We Capturing the Ensemble? | RS Station
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Reposted by Minhuan Li
Yeqing Lin @yeqinglin.bsky.social · 08/05/2026
Introducing Genie 3, a generative protein model that substantially advances the state-of-the-art for binder design, increasing in silico success rates by up to 20x on hard multimeric targets. It also debuts a form of inference-time scaling unobserved in other design models. 🧵1/8
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Reposted by Minhuan Li
Samuel Sledzieski @samsl.io · 28/04/2026
Introducing MIMIC: a new foundation model trained natively across DNA, RNA and proteins. MIMIC is multimodal and generative: it can use structure, regulation, evolution, and experimental context to infer missing biology or design new sequences. 🧵⬇️
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Minhuan Li @minhuanli.bsky.social · 02/04/2026
ROCKET came out on Nature Methods today. It takes a tremendous amount of effort to translate a research concept into a practical tool—one that researchers can seamlessly drop into their existing pipelines. We learned a lot along the path and will carry that spirit forward.
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Minhuan Li @minhuanli.bsky.social · 13/03/2026
It was a fantastic trip and a pleasure talking with the Pfizer team 😄 One highlight was discovering they’ve built a web GUI for ROCKET to make it more accessible—I’m thrilled (and even a bit surprised) to see how our tool helping people solve real-world problems.
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Reposted by Minhuan Li
Mohammed AlQuraishi @moalquraishi.bsky.social · 13/03/2026
New OpenFold3 preview out! (OF3p2) It closes the gap to AlphaFold3 for most modalities. Most critically, we're releasing everything, including training sets & configs, making OF3p2 the only current AF3-based model that is functionally trainable & reproducible from scratch🧵1/9
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Reposted by Minhuan Li
Stephanie Wankowicz @stephanieaw.bsky.social · 27/01/2026
New TTPD with @fraserlab.com! We chat about travels, new preprints, and vibe coding. podcasts.apple.com/us/podcast/b... open.spotify.com/episode/6QCR...
podcasts.apple.com
Back to December
Podcast Episode · The Tortured Proteins Department · 01/27/2026 · 52m
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Minhuan Li @minhuanli.bsky.social · 02/01/2026
Check our new preprint smoothing rugged Cryo-EM landscapes: shorturl.at/gYs9U We tackle practical hurdles of Optimal Transport (OT) loss—differentiability, cost & noise sensitivity—make it a feasible inference workhorse. W/ G. Woollard, D. Herreros, @pilarcossio.bsky.social, K. Dao Duc 🧵👇 (1/9)
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Reposted by Minhuan Li
Alisia Fadini @alisiafadini.bsky.social · 20/10/2025
ROCKET's webinar on cryo-EM+crystal data-guided protein structure prediction is now online 🚀: www.youtube.com/watch?v=_29C... Thank you to the many of you who attended and stayed overtime for more Q&A, and especially to @sbgrid.bsky.social for hosting us last week!
youtube.com
ROCKET
YouTube video by SBGrid Consortium
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