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Nazlican Yürekli

@nazlicanyurekli.bsky.social
160 followers 213 following 21 posts

Doctoral Researcher @MPI Science of Light

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Nazlican Yürekli @nazlicanyurekli.bsky.social · 26/09/2026
🧿🧿🧿🥳🥳My supervisorrr 🥳🥳🥳🎉🎉🎉🎉🎉🎉🎉🧿🧿🧿🧿🧿🧿🧿🧿🧿🧿 @lmoeckl.bsky.social 🧿🧿🧿🧿🥳🥳🥳🥳🎉🎉🎉🎉🎉🎉 CONGRATULATIONS 🎉 So so proud 🥳🎉🎉🎉🎉🎉🎉🎉
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Nazlican Yürekli @nazlicanyurekli.bsky.social · 21/09/2026
1/ A grad student who builds on someone's work without citing it gets penalized. An AI system trained on that same work owes nothing.
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 03/09/2026
I wouldn’t be here without her 🙏 www.nbcnews.com/news/us-news...
nbcnews.com
Gloria Steinem, fierce feminist trailblazer, dies
A pioneering activist and journalist, Steinem was one of the women’s liberation movement’s most outspoken advocates.
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Introini Lab @vascularinfection.bsky.social · 02/07/2026
🚨 PhD Position Available! Join my lab at MPZPM/MPL, Erlangen, Germany! 🧬 Develop a Human Blood–Retinal Barrier Model to Understand Cerebral Malaria. Funded by the Hector Fellow Academy. 🔗 Project details: mpzpm.mpg.de/research/vio... 🔗 Apply: hectorfellowacademy.applicationportal.org Please share!
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 29/07/2026
Cool method for nano pore based peptide sequencing, nice use of copper-free click chemistry as well! www.nature.com/articles/s41...
nature.com
Sequential reading of a stepwise-shortened peptide immobilized on nanopore - Nature
A nanopore-based ‘chop and measure’ method sequences peptides at single-amino-acid resolution by using enzymatic digestion to progressively shorten the N terminus one residue at a time,...
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adamezracohen.bsky.social @adamezracohen.bsky.social · 20/07/2026
We developed a new approach for mapping absolute membrane voltage, based on dynamic photocycle control in Voltron2. www.biorxiv.org/content/10.6... Here's my favorite example: human iPSC colonies break into electrical domains as they begin to differentiate.
Top image shows a greyscale picture of some cells.  Bottom image shows a voltage map overlay in color, with two electrical "domains".Wide-area view of membrane voltage in human iPSC colonies.
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Nazlican Yürekli @nazlicanyurekli.bsky.social · 29/06/2026
Gave an oral talk today at ICBP 2026 in Genoa 🇮🇹 “Breaking the Spatial Barrier.” Every immune cell wears a sugar coat that shapes how the immune system reads it. At single-molecule scale it’s been invisible. So we mapped it, one molecule at a time. 🔬 #ICBP2026 #Biophysics #Glycobiology #Glycotime
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Ali Shaib @alishaib.bsky.social · 02/06/2026
Supplementary. Fig. 6-7
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Ali Shaib @alishaib.bsky.social · 01/06/2026
Hello #world, meet 1,000× Expansion Microscopy. A small gel would grow to the size of an Olympic swimming pool, while amino-acid-scale distances become visible with ordinary light microscopy. Led by Helena Hu from @eboyden3.bsky.social's lab, in collab with us. Story: www.biorxiv.org/content/10.6...
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Kennedy Institute of Rheumatology @kiroxford.bsky.social · 27/05/2026
On Monday 1 June, Prof. Dr. med. Stefan Uderhardt will join us to present 'Towards a tissue-level understanding of homeostasis and inflammation'. Our external seminars are open to all members of the University of Oxford. Don't miss it! events.ox.ac.uk/oxford_event...
A purple and white poster reads 'the Kennedy Institute of Rheumatology external seminar: towards a tissue-level understanding of homeostasis and inflammation'. The speaker is Prof Dr med Stefan Uderhardt from University Hospital Erlangen. 1 June 2026, Kennedy Lecture Theatre, 12:00-13:00. Open to all members of the University of Oxford. Hosted by Irina Udalova.
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 26/05/2026
“Academic science is not only about productivity, it is also about deep understanding, exploring creative solutions and training critical thinkers to be the next generation of researchers.” www.nature.com/articles/d41...
nature.com
The uncritical adoption of AI in science is alarming — we urgently need guard rails
Artificial intelligence is rapidly accelerating scientific output, but risks narrowing inquiry, weakening judgement and undermining how scientists are trained.
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Sol Messing @solmg.bsky.social · 13/05/2026
New in Nature: LLMs give "the party line" in the languages of authoritarian regimes. This works when they control the media, which feeds pretraining data. We show more state control over the media means less critical LLMs. 6 studies spanning 38 languages & 13 models. Details ↓
Scatter plot of 38 countries plus China showing the proportion of LLM responses favorable to the regime in the local language vs. World Press Freedom Index score. Lower press freedom predicts more regime-favorable responses; all production models pooled.
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Olivia Guest · Ολίβια Γκεστ @olivia.science · 08/05/2026
Preprinted! Been working on this for ~1 year w wonderful coauthors Nancy & Mark: > Understanding Artificial Neural Networks: Mysterianism about Known Mechanism is Mysticism doi.org/10.5281/zeno... Have you noticed many experts say they don't understand AI? What's going on? 🤯 Let us tell you... 1/
Understanding Artificial Neural Networks:
Mysterianism about Known Mechanism is Mysticism
Olivia Guest1,2, Nancy Abigail Nuñez Hernández3, and Mark Blokpoel1,2
1Department of Cognitive Science and Artificial Intelligence, Radboud University, The Netherlands
2Donders Institute for Brain, Cognition, and Behaviour, Radboud University, Nijmegen, The Netherlands
3Facultad de Estudios Superiores Acatlán-Universidad Nacional Autónoma de México, Mexico
Mysterianism is the idea that human cognition, mind, cannot be understood. Taking this
concept and applying it to known mechanism — such that claims are made that we do not
know how engineered systems, such as artificial neural networks (ANNs), work, or that they
constitute black boxes that we can only open with difficulty — is inappropriate at best and
malicious at worst. We do know the mechanistic structure of such models because we designed
and built them. We also do know their functional role (what they are for) as well as the
mathematical function they are asked to approximate (map inputs to target outputs). Because
mysterianist beliefs about known systems, such as ANNs, are often expressed, scientists need
to sit up and take notice. We provide an error theory as to what is going on to help unpick
this metatheoretical blunder. Ultimately, the problem is that ‘understanding’ is not a technical
term in these cases: the word is co-opted for a specific narrative to sell ‘artificial intelligence’
through mystification. All computational systems, from pendulums to databases, will behave
in ways we cannot predict or control — this is not a unique property of ANNs — and experts
do indeed grasp the computational properties of these systems nonetheless.
Keywords: artificial neural networks; mechanism; black box; epistemology; artificial
intelligence; understanding4 GUEST, NUÑEZ HERNÁNDEZ, & BLOKPOEL≈
ANNs are equiva-
lent to or inspired
by humans.
α
≡
ANNs are a black
box or unknowable,
even if opened.
β
≡
Humans are a black
box or unknowable.
γ
Figure 1
Three co-occurring (latent) assertions in the context of con-
temporary reasoning on AI and cognition. While they may
appear to hang together in “reflective equilibrium” (Elgin 2017),
their metatheoretical examination brings their contradictions to
light. Starting from the top, and moving clockwise: 𝛼) represents
the typical assertion of so-called cognitive, neural, or otherwise
biological plausibility or inspiration presented for ANNs; 𝛽) is
the claim we tackle head on here — both in terms of analysing
the constituent terms and in how it relates to the other two
assumptions; and 𝛾) exemplifies a type of mysterianism, which
while not always explicitly expressed, plays a background role
and importantly comes into conflict with the other two claims
in important waysMYSTERIANISM ABOUT KNOWN MECHANISM IS MYSTICISM 11World
?Di
Data?Si
ANN
Figure 3
Not all systems, 𝑆𝑖 relate to their relevant data, 𝐷𝑖 and world
phenomena this way, but ANN models (as many inferential
statistical models) do when used without scientific understand-
ing of the data-generating process or without verbal or formal
theory to match (Guest and Martin 2025b, 2021, 2023). As we
move from left to right above, we move from full understanding
of engineered systems, 𝑆𝑖 to less or even possibly none of the
data, 𝐷𝑖 to the world which can be thought of as the set of
phenomena to be understood.
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Leonhard Möckl @lmoeckl.bsky.social · 16/05/2026
Glycan Atlassing is online at @natnano.nature.com! Thanks to everyone involved, especially to @dijo-mj.bsky.social and @nazlicanyurekli.bsky.social who spearheaded the work. Read the paper here: dlvr.it/TSXNDb #Glycotime
dlvr.it
Glycan atlassing enables functional tracing of cell state - Nature Nanotechnology
Multiplexed super-resolution microscopy of DNA-barcoded lectins and metabolically incorporated unnatural sugars quantitatively links the nanoscale spatial relationships of glycocalyx organization and ...
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Nazlican Yürekli @nazlicanyurekli.bsky.social · 16/05/2026
Thrilled to announce that our paper on Glycan Atlassing is officially published in Nature Nanotechnology!🧬🍭 We developed "Glycan Atlassing," a method to map the glycocaly at nanometer resolution. This allows us to trace cellular states and opens new avenues for diagnostics and therapy..
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Nature Nanotechnology @natnano.nature.com · 14/05/2026
dlvr.it
Decoding the cell state from the nanoscale architecture of the cell-surface glycome
Nature Nanotechnology, Published online: 14 May 2026; doi:10.1038/s41565-026-02154-9Glycan atlassing is a method for the detection of the spatial organization of cell-surface glycosylation patterns at nanoscale. It shows that such patterns reflect the functional state of the cell, providing direct evidence that the cell-surface glycome encodes biological information via its spatial organization.
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Leonhard Möckl @lmoeckl.bsky.social · 18/03/2026
🚨 PhD position 🚨 Fully funded PhD position at the intersection of super-resolution microscopy, glycobiology, and biomedicine! The position is part of a Doctoral Network. All information: www.glycocalyx.org Apply here: tinyurl.com/yc35dajz Spread the word!
glycocalyx.org
Home | GLYCOCALYX
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Elisa Fadda @elisafadda.bsky.social · 15/12/2025
If you are at #Pacifichem2025 I'll be opening the symposium of Advances in Glycan Structure and Dynamics [BIO004] at 9:15 am (sadly) from Southampton (UK) and not from Honolulu 😔, but I'll try to keep the #glycotime lively and cheerful even from afar 🤩👍
scene from Rocketman the movie showing a very glamorous Elton John on the right in a car wearing a pink feathered costume (as a simile to a glycosylated protein) vs a normally dressed guy on the left, as a simile for a protein without the glycans. The meme is originally from @benschulz.bsky.social
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Nazlican Yürekli @nazlicanyurekli.bsky.social · 17/11/2025
Very helpful package , and it’s free.. it’s good to not pay so much money to wormtrack softwares anymore:). Amazing service.
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Max Planck Institute for the Science of Light (MPL) @mpi-scienceoflight.bsky.social · 08/10/2025
With deep sadness, we share that Prof. Jochen Guck, Director at the Max Planck Institute for the Science of Light passed away on October 3. His visionary work bridged physics and medicine. We have lost a brilliant scientist and dear friend. mpl.mpg.de/news/article... @fau.de 📸 Stephan Spangenberg
Professor Jochen Guck, Director at the Max Planck Institute for the Science of Light (MPL), He headed the division “Cell Physics” at MPL and the Max-Planck-Zentrum für Physik und Medizin (MPZPM).
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Ryan Flynn @raflynn5.bsky.social · 06/10/2025
Lead by postdoc in the lab Ruiqi Ge and in collaboration with Bob Coffey’s lab, we are happy to share rPAL-seq for rapid and sensitive sequencing based profiling of glycoRNAs @biorxivpreprint.bsky.social www.biorxiv.org/content/10.1...
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Nazlican Yürekli @nazlicanyurekli.bsky.social · 02/10/2025
🍬🔬Proteins are so sweet under the microscope .. 🍬🔬 As Möckl RG, for the first time, we image the single-protein glycosylation in native cell state with super-resolution microscopy, map cell-surface glycoproteins, and uncover their spatial organization. #MöckIRG #glycotime #glycoprotein #dnapaint
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Nazlican Yürekli @nazlicanyurekli.bsky.social · 07/09/2025
So proud of my colleague & friend @dijo-mj.bsky.social for winning Best Poster Award at the 14th SMLM Symposium in Bonn 🎉👏 His creativity, dedication & hard work truly deserve this recognition. Grateful to be part of the work and Möckl RG! #SMLMS2025 #superresolutionmicroscopy #glycotime
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Nature @nature.com · 03/08/2025
Scientists have mapped individual sugar molecules on the surface of cells at a resolution once thought to be impossible for light microscopes go.nature.com/40I9Ewv
go.nature.com
Cell's sugar coating mapped at below-nanometre resolution
Nature - Super-resolution technique works with off-the-shelf optical microscopes.
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Florian Schueder @florianschueder.bsky.social · 31/07/2025
🚨 2 × PhD positions @EPFL! 🚨 Help us push the boundaries of fluorescence microscopy - DNA nanotech, custom optics & spatial omics in Lausanne 🇨🇭. Start Jan 2026. Send CV + motivation + 2 refs → fschueder@ethz.ch #PhD #Hiring #microscopy #SuperResolution #SpatialOmics #DNAPAINT #FLASHPAINT
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Luciano A. Masullo @lumasullo.bsky.social · 30/07/2025
Ångström-resolution imaging of cell-surface glycans Now published in Nature Nanotechnology! 🤩 @natnano.nature.com www.nature.com/articles/s41...
nature.com
Ångström-resolution imaging of cell-surface glycans - Nature Nanotechnology
By combining bioorthogonal metabolic labelling and resolution enhancement through sequential imaging of DNA barcodes, the molecular organization of individual sugars in the native glycocalyx has been ...
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JungmannLab @jungmannlab.bsky.social · 28/07/2025
Ever wondered what happens when therapeutic antibodies bind to cancer cells? In our latest study, we used multiplexed 3D-RESI to directly visualize how anti-CD20 antibodies interact with their receptors, revealing their precise arrangement at single-protein resolution. (1/6)
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Leonhard Möckl @lmoeckl.bsky.social · 28/07/2025
Very happy to see this one out - the first molecular-resolution imaging of glycocalyx components in their native environment! Great collaboration with @jungmannlab.bsky.social - congrats to first authors @karimalmahayni.bsky.social and @lumasullo.bsky.social and to the whole team!
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Nature Nanotechnology @natnano.nature.com · 28/07/2025
New paper online: Ångström-resolution imaging of cell-surface glycans. The molecular organization of sugars in the native #glycocalyx has been resolved at 9 ångström using bioorthogonal metabolic labeling and #superresolution imaging of DNA barcodes. #Glycotime www.nature.com/articles/s41...
nature.com
Ångström-resolution imaging of cell-surface glycans - Nature Nanotechnology
By combining bioorthogonal metabolic labelling and resolution enhancement through sequential imaging of DNA barcodes, the molecular organization of individual sugars in the native glycocalyx has been ...
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Max Planck Institute for the Science of Light (MPL) @mpi-scienceoflight.bsky.social · 04/07/2025
Nazlican is illuminating the complex landscape of the glycocalyx. Together with her colleague Dijo M. Joseph, she co-led their latest publication: Glycan Atlassing: Nanoscale analysis of glycocalyx architecture enables functional tracing of cell state. 👉 www.biorxiv.org/content/10.1...
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Nazlican Yürekli @nazlicanyurekli.bsky.social · 02/06/2025
Glycan Atlassing enables to track cell state by glycocalyx organization 🍬🍬 Our latest paper is available 👉🏼https://www.biorxiv.org/content/10.1101/2025.04.29.651200v1 #möcklrg #glycotime #glycocalyx #superresolution
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Max Planck Institute for the Science of Light (MPL) @mpi-scienceoflight.bsky.social · 02/06/2025
Natural killer cells are key to the immune system, eliminating diseased cells. Their activity must be tightly controlled, possibly through glycan-protein interactions. Researchers use advanced optics to study how glycosylation regulates immune cells. 👉 mpl.mpg.de/research-at-... 📸 Nazlican Yürekli
Research Group Leonhard Möckl ›Physical Glycosciences‹

Natural killer cells (NK cells) are one of the essential components of the innate immune system. They recognize and eliminate diseased cells. NK cells do not have to be activated by other cells to kill a target, unlike their adaptive immune counterparts. This fast response requires their activity to be tightly regulated in the body. One mode of regulation might be glycan-protein interactions happening on the membranes of NK cells. Research in the Möckl group ›Physical Glycosciences‹ uses advanced optics to reveal the functional role of glycosylation in immune cell regulation.
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 02/05/2025
Check out this latest #glycotime achievement from Leonhard Moeckl’s lab: single sugar superresolution imaging to create a high res glycan atlas of cell surfaces! www.biorxiv.org/content/10.1...
biorxiv.org
Glycan Atlassing: Nanoscale analysis of glycocalyx architecture enables functional tracing of cell state
The glycocalyx is a complex layer of glycosylated biomolecules surrounding all cells in the human body. It is involved in the regulation of critical cellular processes such as immune response modulation, cell adhesion, and host-pathogen interactions. Despite these insights, the functional relationship between glycocalyx architecture and cellular state has remained elusive so far, mainly attributable to the structural diversity of glycocalyx constituents and their nanoscale organization. Here, we show that DNA-tagged lectin labeling and metabolic oligosaccharide engineering enables multiplexed super-resolution microscopy of glycocalyx constituents, yielding an atlas of glycocalyx architecture with nanometer resolution. Quantitative analysis of the obtained nanoscale map of glycocalyx constituents facilitates the extraction of characteristic spatial relationships that accurately report on cellular state. We demonstrate the capacity of our approach, which we term Glycan Atlassing, across cell and tissue types, ranging from cultured cell lines to primary immune cells, neurons, and primary patient tissue. Glycan Atlassing establishes a powerful strategy for investigating glycocalyx remodeling in development and disease, potentially enabling the development of new glycocalyx-centered targets in diagnosis and therapy. ### Competing Interest Statement The authors have declared no competing interest. Else Kröner-Fresenius-StiftungElse Kröner-Fresenius-Stiftung, https://ror.org/03zcxha54, 2020_EKEA.91 Deutsche ForschungsgemeinschaftDeutsche Forschungsgemeinschaft, https://ror.org/018mejw64, 529257351, 460333672, 270949263 Wilhelm Sander StiftungWilhelm Sander Stiftung, https://ror.org/02q83sc19, 2023.025.1 European Research CouncilEuropean Research Council, , 101118729 Alexander von Humboldt FoundationAlexander von Humboldt Foundation, https://ror.org/012kf4317,
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Leonhard Möckl @lmoeckl.bsky.social · 02/05/2025
Huge shoutout to @dijo-mj.bsky.social and @nazlicanyurekli.bsky.social who spearheaded this study! Also, thanks to our amazing collaborators Sarah Fritsche, Reem Hashem, Oana-Maria Thoma, Imen Larafa, Tina Boric, Chloe Bielawski, @karimalmahayni.bsky.social, Kristian Franze, and Maximilan Waldner!
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Nazlican Yürekli @nazlicanyurekli.bsky.social · 02/05/2025
“ 🍭🧫🔬Alice in sugar land 🔬🧫🍭” So happy to be part of this amazing work. Let’s dive into the amazing organization and dynamics of glycocalyx in various of samples and be amazed how cell states can be traced by glycocalyx states🔬, of course, in super resolution level 😉. #möcklgroup #glycotime
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Karim Almahayni 🍉 @karimalmahayni.bsky.social · 17/01/2025
Our latest paper made the cover! 🎉 We developed a library of light-activated molecules designed for precise, localized induction of cell death in biological systems, characterized both in vitro and in vivo. Great collaboration with @wehnerlab.bsky.social Read more: pubs.acs.org/doi/full/10....
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Leonhard Möckl @lmoeckl.bsky.social · 10/02/2025
ÅNGSTRÖM-RESOLUTION IMAGING OF CELL-SURFACE GLYCANS🍬🍬🍬 For the first time, we are able to image the molecular architecture of the glycocalyx at Ångström resolution. A dream come true! Read the preprint: biorxiv.org/content/10.110… And find our tweetorial below! #glycotime
biorxiv.org
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 10/02/2025
This is an amazing achievement - angstrom scale imagine of glycan molecules, what a great time for #glycotime. Congrats Leonhard Möckl! www.biorxiv.org/content/10.1...
biorxiv.org
Angstrom-resolution imaging of cell-surface glycans
Glycobiology is rooted in the study of monosaccharides, Angstrom-sized molecules that are the building blocks of intricate glycosylation patterns. Glycosylated biomolecules form the glycocalyx, a dens...
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Karim Almahayni 🍉 @karimalmahayni.bsky.social · 11/02/2025
ÅNGSTRÖM-RESOLUTION IMAGING OF CELL-SURFACE GLYCANS 🍬🍭🔬 For the first time, we’re able to study the molecular architecture of the glycocalyx at single-sugar resolution—a longstanding challenge in glycobiology! #glycotime Preprint and #bluetorial below!!
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