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Monika Mohenska

@mmohenska.bsky.social
66 followers 53 following 42 posts

Bioinformatician at the Polo Lab. Interested in epigenetics and cell fate 🧬👩‍💻 Monash Biomedical Discovery Institute, Monash University, Adelaide Centre for Epigenetics, SAiGENCI, The University of Adelaide

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Monika Mohenska @mmohenska.bsky.social · 05/12/2025
Ben Goudey from Australian BioCommons has been INCREDIBLE teaching #MachineLearning in the morning workshops. He’s so engaging and can get most to understand the 101 of regression/classification/cross validation etc! (Note most in this course don’t have this background) #EMBLAPhD @emblaustralia.org
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Monika Mohenska @mmohenska.bsky.social · 03/12/2025
Been seeing AI thrown a lot and I’m not sure everyone knows what it means. Eduardo Eyras gives a brilliant summary from #AI to deep neural networks, for all to understand! #EMBLAPHD @emblaustralia.org
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Monika Mohenska @mmohenska.bsky.social · 03/12/2025
Mechanistic modelling with ODEs and Virtual Cell Models with foundational models this morning at #EMBLAPhD with SAiGENCIs Lan and Anthony - looking forward to more #AI 🦾🤖 @emblaustralia.org @saigenci.bsky.social @acepigenetics.bsky.social
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Monika Mohenska @mmohenska.bsky.social · 01/12/2025
Really interesting topics/philosophies on AI this morning at #emblaphd 2025! Strong start to the course, I look forward to the discussion! #AI @emblaustralia.org @acepigenetics.bsky.social @saigenci.bsky.social
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South Australian immunoGENomics Cancer Institute @saigenci.bsky.social · 29/10/2025
📣 @saigenci.bsky.social congratulate Professor Jose Polo on his election as Fellow of the Australian Academy of Health & Medical Sciences (AAHMS). Jose is Program Lead for Cancer Epigenetics @SAiGENCI and Director @acepigenetics.bsky.social. Many congratulations Jose! aahms.org/news/29-of-a...
aahms.org
29 of Australia’s leading health and medical researchers elected as AAHMS Fellows - AAHMS
The Australian Academy of Health and Medical Sciences (AAHMS) has announced the election of 29 new Fellows for 2025, recognising the nation’s most outstandi ...
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Feargal Ryan @feargalr.bsky.social · 28/11/2025
That’s a wrap! Huge thank you to everyone who joined us for #ABACBS2025 & a big shout-out to the Adelaide bioinfo community who worked their butts off. Couldn’t have asked for a better crew or a better venue than Adelaide Oval. @wessidepraxis.bsky.social @linsalrob.bsky.social
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George Bouras @gbouras13.bsky.social · 28/11/2025
This was one of the best workshops I have ever been to. I came out of it with a Wasm app for making pharokka/phold/phynteny's genome maps - available at gbouras13.github.io/phold-plot-w... It runs the browser almost instantly - please give it a go with your phages of interest! #ABACBS2025
gbouras13.github.io
phold_plots — Pyodide
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Monika Mohenska @mmohenska.bsky.social · 28/11/2025
Spatial Transcriptomics analyses with scider, hoodscanR and more.. this afternoon with Polo lab bioinformaticians. Session lead by the amazing @ningliu311.bsky.social and with help from the incredible @noraliu.bsky.social and myself! #ABACBS2025
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Wytamma @wytamma.bsky.social · 27/11/2025
Client-side bioinformatics workshop done ✅ massive thanks to legends @lonsbio.bsky.social @lfeatherstone.bsky.social @torstenseemann.bsky.social #ABACBS2025
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George Bouras @gbouras13.bsky.social · 26/11/2025
Workshops underway this morning! #ABACBS2025
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eLife @elife.bsky.social · 26/11/2025
Using an elegant single-cell RNA-seq analysis approach, researchers show that the gene Eed is essential for guiding facial bone formation and early tissue growth. buff.ly/g4JqhjJ
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Monika Mohenska @mmohenska.bsky.social · 26/11/2025
A true privilege getting to know and work with all of you! What an amazing conference 💕 #ABACBS2025
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Nora Liu @noraliu.bsky.social · 26/11/2025
@acepigenetics.bsky.social team at #ABACBS2025! Grateful for the chance to help plan and organise this year’s meeting and to chair the single cell and spatial session, where my colleague and dear friend Ning is our invited speaker. Biggest congrats to @mmohenska.bsky.social for her poster award!
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Monika Mohenska @mmohenska.bsky.social · 26/11/2025
And that’s a wrap for the #ABACBS2025 conference portion of the event! So many incredible talks, seeing old friends and meeting new faces. Loved every moment - onto the workshops next!!
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Phoebe Carr @phoebecarr.bsky.social · 26/11/2025
Loved hearing Dr. Ryan Wick’s talk on genome assemblies with Autocycler. Really amazing hearing from him as I use a lot of his tools in my every day work! #ABACBS2025 ⚫️🔴 🔵⚪️
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Monika Mohenska @mmohenska.bsky.social · 26/11/2025
BenchHub enables an inclusive and transparent ecosystem for community-focused benchmarking in computational biology #ABACBS2025 www.biorxiv.org/content/10.1...
biorxiv.org
BenchHub enables an inclusive and transparent ecosystem for community-focused benchmarking in computational biology
The rapid growth of computational methods for the computational biology field highlights the critical role of benchmarking in guiding method selection. However, there is no standardised data structure...
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Monika Mohenska @mmohenska.bsky.social · 26/11/2025
Star this repo ASAP github.com/fabilab/iplotx Fabio Zanini’s package is everything and more #ABACBS2025
github.com
GitHub - fabilab/iplotx: Visualise networks and trees in Python, with style.
Visualise networks and trees in Python, with style. - fabilab/iplotx
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George Bouras @gbouras13.bsky.social · 25/11/2025
A gymnastic start to day 2 with a keynote from Ami Bhatt #ABACBS2025
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George Bouras @gbouras13.bsky.social · 25/11/2025
Time for @zaminiqbal.bsky.social ‘s keynote #ABACBS2025
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Monika Mohenska @mmohenska.bsky.social · 25/11/2025
I might be biased.. but this is one of my favourite ABACBS conferences I’ve ever been to #ABACBS2025
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Monika Mohenska @mmohenska.bsky.social · 25/11/2025
What and incredible speaker! @zaminiqbal.bsky.social I really enjoyed learning all about bacterial plasmids and their evolution. PSA they are also recruiting in Bath UK - go talk to him for the deets #ABACBS2025
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Monika Mohenska @mmohenska.bsky.social · 25/11/2025
Gotta love a developmental talk! Now Dr Hieu Nim with jaw dropping zebrafish visuals - spatio temporal at single cell level - gorgeous #ABACBS2025
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Monika Mohenska @mmohenska.bsky.social · 25/11/2025
Studying cancer fusion expression with 10X flex system @jovmaksimovic.bsky.social at #ABACBS2025 🧬
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Monika Mohenska @mmohenska.bsky.social · 25/11/2025
@ningliu311.bsky.social BLOWING the audience away today with his selection of spatial transcriptomics packages #ABACBS2025🍏🍕🧫 find him today if interested using them.
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Sagrika Chugh @sagrikachugh.bsky.social · 25/11/2025
What are the genes that cause Long COVID and how can we find these genes, Sindy Pinero from the University of South Australia gave a great talk on their approach to answer these and more using their multi-omics framework. @abacbs.bsky.social #ABACBS2025
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Monika Mohenska @mmohenska.bsky.social · 25/11/2025
If you like my poster please vote for me!! Poster 127 🦘see you in the afternoon session for some spatial transcriptomics!! 🧬 #marsupials #ABACBS2025
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Monika Mohenska @mmohenska.bsky.social · 25/11/2025
Spatial transcriptomics, spatial CNV inference, plus ovarian cancer study of tumour micro environments and more … @alforrest.bsky.social see publication for some work #ABACBS2025 www.nature.com/articles/s41...
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Monika Mohenska @mmohenska.bsky.social · 25/11/2025
Front row seat at the #ABACBS2025 grant discussions- bioinformaticians need to support each other we are not competing with each other- #bioinformatics
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jc-bio.bsky.social @jc-bio.bsky.social · 24/11/2025
Full house at #ABACBS2025
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Monika Mohenska @mmohenska.bsky.social · 24/11/2025
What an incredible Shark’s EMCR panel. So much advice and new points of view for our EMCRs 🦈👏 #ABACBS2025
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ningliu311.bsky.social @ningliu311.bsky.social · 24/11/2025
Holy shark, it’s an academic shark tank in #ABACBS2025
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abacbs.bsky.social @abacbs.bsky.social · 24/11/2025
Lunch with a view #ABACBS2025 #COMBINE2025
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Nora Liu @noraliu.bsky.social · 24/11/2025
What a stunning lineup for the #ABACBS2025 EMCR Shark Tank panel on navigating research careers and crafting winning grants and fellowships! @abacbs.bsky.social
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Nature Cell Biology @natcellbio.nature.com · 23/11/2025
☕Li et al. uncover a connection between #metabolic cues and #mitochondria protein degradation, showing that specifically leucine stabilizes outer mitochondrial membrane proteins by inhibiting ubiquitylation and promoting mitochondrial respiration. bit.ly/48t7ZPw
bit.ly
Leucine inhibits degradation of outer mitochondrial membrane proteins to adapt mitochondrial respiration - Nature Cell Biology
Li et al. uncover a connection between metabolic cues and mitochondrial protein degradation, showing that specifically leucine stabilizes outer mitochondrial membrane proteins by inhibiting ubiquityla...
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Nikeisha Caruana @nikeishacaruana.bsky.social · 23/11/2025
The Shark Tank has begun! A fantastic initiative by the postdoc community to help build collaboration and support postdocs in pitching their grants. @abacbs.bsky.social #ABACBS2025
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Zamin Iqbal @zaminiqbal.bsky.social · 24/11/2025
Very excited to be in Adelaide to attend #ABACBS2025 . Australia is a powerhouse of microbial genomics, and indeed of bioinformatics, so am very much looking forward to meeting everyone, old friends and new, and speaking tomorrow!
View of Adelaide from just by the Australian Bioinformatics and Computational Biology Society conference.
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Nikeisha Caruana @nikeishacaruana.bsky.social · 23/11/2025
This merch is next level! @abacbs.bsky.social #ABACBS2025
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Monika Mohenska @mmohenska.bsky.social · 23/11/2025
SPECTACULAR first day for #ABACBS2025
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Nora Liu @noraliu.bsky.social · 23/11/2025
Can’t wait for tmr’s #ABACBS2025 EMCR Shark Tank! We are all ready to go!
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abacbs.bsky.social @abacbs.bsky.social · 20/11/2025
Swag! #ABACBS2025
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Monika Mohenska @mmohenska.bsky.social · 22/11/2025
Some last minute touches… #ABACBS2025 #bioinformatics #pitching
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Denis Wirtz @deniswirtz.bsky.social · 20/11/2025
Still my favorite 3D reconstruction of a pancreatic tissue. Using the CODA workflow, we mapped a billion individual cells in 3D. Red: pre-cancer lesions Navy blue: ducts Light blue: islets of Langerhans Purple: acini Green: blood vessels Yellow: fat More here: www.nature.com/articles/s41...
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Monika Mohenska @mmohenska.bsky.social · 18/11/2025
The TANK is almost in place!!! Get READY EMCRS!! #ABACBS2025 #bioinformatics #ai #computers #SharkTank
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eLife @elife.bsky.social · 13/11/2025
Septins and the exocyst complex work together to guide membrane trafficking during cell division in fission yeast, revealing one of the most conserved functions of septins in exocytosis. buff.ly/rkEfQZY
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Nature Biotechnology @natbiotech.nature.com · 11/11/2025
Multimodal learning enables chat-based exploration of single-cell data - @bocklab.bsky.social @cemm.oeaw.ac.at @meduniwien.ac.at go.nature.com/3WPGJnW
go.nature.com
Multimodal learning enables chat-based exploration of single-cell data - Nature Biotechnology
CellWhisperer uses multimodal learning of transcriptomes and text to answer questions about single-cell RNA-sequencing data.
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bioRxivpreprint @biorxivpreprint.bsky.social · 14/11/2025
Late-Onset Preeclampsia is characterised by Accelerated Placental Aging www.biorxiv.org/content/10.1101/202…
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Science X / Phys.org @sciencex.bsky.social · 03/11/2025
A new AI model integrates single-cell and spatial transcriptomics data, enabling large-scale reconstruction of cell organization and interactions within tissues for advanced biological analysis. doi.org/g982z4
phys.org
Foundation model reveals how cells are organized in tissues
Researchers at Helmholtz Munich and the Technical University of Munich (TUM) have developed Nicheformer, the first large-scale foundation model that integrates single-cell analysis with spatial transcriptomics.
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Monika Mohenska @mmohenska.bsky.social · 13/11/2025
Get excited!! Jam packed week of bioinformatics, science and FUN! #ABACBS2025 #bioinformatics #AI #machinelearning #science conference of the season 💻🧬
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bioRxiv Developmental Biology @biorxiv-devbio.bsky.social · 22/10/2025
A model of apical-out human first trimester trophoblast organoids to study regeneration after syncytial damage www.biorxiv.org/content/10.1101/202…
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