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Jesus Miro-Bueno

@mirobueno.bsky.social
56 followers 76 following 3 posts

Researcher at CNB-CSIC. Co-founder of NEWTONBiotwins.com/en/. Synthetic Biology | Digital Twins

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Reposted by Jesus Miro-Bueno
Angel Goñi-Moreno @angelgm.eurosky.social · 07/09/2026
Also next in Lab's conference agenda: the IEEE International Conference on Digital Twin swc-ieee-2026.github.io/digitaltwin/. Jesús @mirobueno.bsky.social will give a talk about our digital twins in microbiology and #synbio.
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Ángeles Hueso-Gil @angeles-hg.bsky.social · 29/05/2026
Paper out!! 🥳 We controlled bacterial growth by tuning native RNAP availability. Then, we studied the impact of growth and this RNAP availability over different NOT gates present in that strain. Great work with @mirobueno.bsky.social and @angelgm.eurosky.social 😀. link.springer.com/article/10.1...
link.springer.com
Growth control as a central regulator for tuning the cellular context - Journal of Biological Engineering
The cellular context decisively shapes genetic circuit performance, but the interplay between host and circuit remains difficult to control rationally. To address this challenge, we replaced the nativ...
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Angel Goñi-Moreno @angelgm.eurosky.social · 22/05/2026
📣 Latest paper out! I'll write a thread about it next week: growth control, cellular context, genetic circuits... A fascinating story by @angeles-hg.bsky.social & @mirobueno.bsky.social #synbio #biocomputation link.springer.com/article/10.1...
link.springer.com
Growth control as a central regulator for tuning the cellular context - Journal of Biological Engineering
The cellular context decisively shapes genetic circuit performance, but the interplay between host and circuit remains difficult to control rationally. To address this challenge, we replaced the nativ...
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Reposted by Jesus Miro-Bueno
Juan Rico @juanricomol.bsky.social · 02/03/2026
Great to see this one out. I agree it was challenging but watching it unfold was definitely exciting. The team worked brilliantly, truly thankful!
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Angel Goñi-Moreno @angelgm.eurosky.social · 27/02/2026
Latest paper out! This piece was a challenge: logic, predictability, decidability, non-model organisms, design... Kudos to @juanricomol.bsky.social & Pablo Japón #syntheticbiology #synbio #biocomputation (I'll post more on this next week) www.sciencedirect.com/science/arti...
sciencedirect.com
Dynamics of genetic circuits in Pseudomonas protegens
Genetic circuit engineering enables new cellular functions, yet most circuits are developed in the model host Escherichia coli, limiting their availab…
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Angel Goñi-Moreno @angelgm.eurosky.social · 19/01/2026
New tech adventure: co-founded Newton Biotwins together with @mirobueno.bsky.social. We're building #DigitalTwins for the lab — starting with a flow cytometry twin. Turning #biology into an information science! newtonbiotwins.com/en/home_en/
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Angel Goñi-Moreno @angelgm.eurosky.social · 08/01/2026
New paper out!📢 Exploring the computing power of microbes that shapes the environment. In this short review we talk about the "complexity gap", the distance between bottom-up genetic circuits and microbial information processes. Key questions to improve #biocomputation. 🔗 doi.org/10.1016/j.mi...
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Victor de Lorenzo (CNB, Madrid) @vdlorenzo.bsky.social · 08/01/2026
Bacteria do compute and can be reprogrammed for new capacities—but not exactly by following Turing’s rules. Evolution, context dependence, and the soft-matter nature of living hardware redefine what computation means in biology. From @angelgm.bsky.social Lab 👉🏻 www.sciencedirect.com/science/arti...
sciencedirect.com
Exploring the computing power of microbes that shapes the environment
Microbes process input information into output responses through diverse genetic and metabolic mechanisms, effectively making them physical systems th…
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Angel Goñi-Moreno @angelgm.eurosky.social · 22/12/2025
Side story: NAND gates where one input deals directly with growth control, and it is the actual physical body doing the computation. This is our initial approach to morphological computing in living cells. #biocomputation #alife Our new strain KT-TTX is truly fascinating. Feedback welcome!
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Ángeles Hueso-Gil @angeles-hg.bsky.social · 21/12/2025
Preprint of our work tuning bacterial growth, something that changes context for genetic circuits and therefore, their behaviour. Very interesting observations from both experimental results and a model describing it in this piece of work with @mirobueno.bsky.social and @angelgm.bsky.social! :)
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Angel Goñi-Moreno @angelgm.eurosky.social · 20/12/2025
Preprint out! By controlling growth, via RNAP, we control the entire cellular machinery, and tune the cellular context into distinct, stable states. See how NOT gates behave! Kudos to @angeles-hg.bsky.social and @mirobueno.bsky.social 🔗https://www.biorxiv.org/content/10.64898/2025.12.19.695408v1
biorxiv.org
Growth control as a central regulator for tuning the cellular context
The cellular context interacts with genetic circuits, decisively defining their performance. However, contextual dependencies (the interplay between the host and the circuit) are often difficult to en...
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Bruno Cuevas Zuviría @brunocuevaszuviria.bsky.social · 12/12/2025
My first cover royalsocietypublishing.org/rsfs/issue/1.... This issue contains the article of my database of prebiotic chemistry, at chemorigins.bact.wisc.edu
royalsocietypublishing.org
Volume 15 Issue 5 | Interface Focus | The Royal Society
Themed issues covering cross-disciplinary research at the interface between the physical life and social sciences.
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Angel Goñi-Moreno @angelgm.eurosky.social · 01/12/2025
Our #ALIFE2025 paper is out! 🎉 We show that even when two circuits produce the same output, their evolutionary potential can differ greatly. #Evolution at the smallest scale. “Parameter Evolvability in Gene Expression Models Drives Phenotypic Adaptation” 🔗 direct.mit.edu/isal/proceed...
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Angel Goñi-Moreno @angelgm.eurosky.social · 07/11/2025
If you are at the Emerging Applications of Microbes conference in Leuven, go to poster #24: Engineering growth control to modulate circuit host dependencies, by @angeles-hg.bsky.social. This is a brilliant story about growth rates vs. genetic circuit function. And, of course, noise! #synbio
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Angel Goñi-Moreno @angelgm.eurosky.social · 29/10/2025
The 2025 Retreat of the Biocomputation Lab (in wonderful Chinchón, Madrid) comes to an end. Three days of fantastic discussions, with new (and revisited) goals ahead. What a brilliant team!
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Pavel Dvořák @pavelcito.bsky.social · 11/08/2025
Good news everyone! Our new paper in OUP SynBio is out: Construction of a syntrophic Pseudomonas putida consortium with reciprocal substrate processing url: academic.oup.com/synbio/artic... Many thanks to Barbora and our collaborators @mirobueno.bsky.social and @angelgm.bsky.social
academic.oup.com
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Jesus Miro-Bueno @mirobueno.bsky.social · 11/08/2025
Very happy to see the final version published of our collaboration with Pavel Dvorak's lab! 🦠🧬 doi.org/10.1093/synb...
doi.org
Construction of a syntrophic Pseudomonas putida consortium with reciprocal substrate processing
Abstract. Synthetic microbial consortia can leverage their expanded enzymatic reach to tackle biotechnological challenges too complex for single strains, s
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Angel Goñi-Moreno @angelgm.eurosky.social · 04/08/2025
Brilliant news here! Our manuscript on evolvability was accepted for presentation at @alife2025.bsky.social. So there is a new item in the Lab's conference agenda: #ALIFE Kyoto! More on this coming soon...
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Centro Nacional de Biotecnología (CNB) @cnb-csic.bsky.social · 14/07/2025
El grupo de Angel Goñi lidera un proyecto "Proof of Concept" @erc.europa.eu para desarrollar gemelos digitales pioneros y analizar en profundidad el comportamiento de células vivas Más info: www.cnb.csic.es/proyecto-de-... @angelgm.bsky.social @csic.es @sommalliance.bsky.social
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CSIC @csic.es · 14/07/2025
💡El #CSIC lidera dos proyectos de innovación europeos para prevenir la sismicidad y analizar en profundidad células vivas 👩‍💻Las iniciativas buscan gestionar los riesgos sísmicos de la actividad geoenergética y desarrollar gemelos digitales pioneros ➡️ tinyurl.com/d2m5ffzk
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Angel Goñi-Moreno @angelgm.eurosky.social · 14/07/2025
The NEWTON project got funded, let's go! #DigitalTwins on their way...
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Angel Goñi-Moreno @angelgm.eurosky.social · 06/06/2025
Just out! Want to use quorum sensing (QS) for cell–cell communication? Check this out — you might find it useful! Kudos to Paula Múgica 👏 Standardized Quorum Sensing Tools for Gram-Negative Bacteria | @pubs.acs.org @acs.org #SyntheticBiology @sevaplasmids.bsky.social pubs.acs.org/doi/10.1021/...
pubs.acs.org
Standardized Quorum Sensing Tools for Gram-Negative Bacteria
Engineering synthetic consortia to perform distributed functions requires robust quorum sensing (QS) systems to facilitate communication between cells. However, the current QS toolbox lacks standardized implementations, which are particularly valuable for use in bacteria beyond the model species Escherichia coli. We developed a set of three QS systems encompassing both sender and receiver modules, constructed using backbones from the SEVA (Standard European Vector Architecture) plasmid collection. This increases versatility, allowing plasmid features like the origin of replication or antibiotic marker to be easily swapped. The systems were characterized using the synthetic biology chassis Pseudomonas putida. We first tested individual modules, then combined sender and receiver modules in the same host, and finally assessed the performance across separate cells to evaluate consortia dynamics. Alongside the QS set, we provide mathematical models and rate parameters to support the design efforts. Together, these tools advance the engineering of robust and predictable multicellular functions.
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Angel Goñi-Moreno @angelgm.eurosky.social · 30/05/2025
Digital logic doesn't always fit living matter. Here, two suggestions for handling biological information: 1) Random Pulse Computing (von Neumann's old idea)—check the output robustness (left pic) 2) Probabilistic bits, enabling invertible logic (right pic) 🔗 doi.org/10.1103/Phys...
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Jesus Miro-Bueno @mirobueno.bsky.social · 23/05/2025
Just published!: "Genetic designs for stochastic and probabilistic biocomputing". We explore moving beyond binary logic in #SynBio and #Biocomputation using random pulses and p-bits—embracing biological noise to design robust, invertible genetic circuits in cells. journals.aps.org/pre/abstract...
journals.aps.org
Genetic designs for stochastic and probabilistic biocomputing
The programming of computations in living cells is achieved by manipulating information flows within genetic networks. Typically, gene expression is discretized into high and low levels, representing ...
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Angel Goñi-Moreno @angelgm.eurosky.social · 02/05/2025
Why cellular computations challenge our design principles. We write about computational theory, information, living cells, complexity, computers, evolution... I really enjoyed writing this piece on #biocomputation. Kudos to Lewis & Bruno. www.sciencedirect.com/science/arti...
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BSC-CNS @bsc-cns.bsky.social · 27/03/2025
⚛️💻El ordenador cuántico del BSC @quantumspain.bsky.social estará a disposición de la comunidad investigadora, empresas y organismos públicos ✨Conoced➕sobre el 1r ordenador cuántico de España desarrollado con tecnología 100% europea 🔘 Interactivo: bsc.es/interactivo_... 🔘 PDF: bsc.es/cuantico_pdf
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Angel Goñi-Moreno @angelgm.eurosky.social · 25/02/2025
Next on the Lab's conference agenda: The Gordon Conference #GRC on Quantum Biology. Jesús Miró-Bueno @mirobueno.bsky.social will present our work on probabilistic biocomputation. www.grc.org/quantum-biol...
grc.org
2025 Quantum Biology Conference GRC
The 2025 Gordon Research Conference on Quantum Biology will be held in Lucca (Barga), Lucca Italy. Apply today to reserve your spot.
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Centro Nacional de Biotecnología (CNB) @cnb-csic.bsky.social · 31/01/2025
On 14 February, we’re hosting the Artificial Intelligence in Biology Workshop at #CNB_CSIC with an exceptional line-up of speakers. The opening talk will be given by @hsalis.bsky.social (Biological Engineering, Penn State University). @angelgm.bsky.social Sign up & more info👇 bit.ly/AIinBiology
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Angel Goñi-Moreno @angelgm.eurosky.social · 28/01/2025
Looking forward to this timely workshop on #AI in #Biology at @cnb-csic.bsky.social (Feb 14)! Excited to hear from experts like @hsalis.bsky.social , @alfonsovalencia.bsky.social , @noeliaferruz.bsky.social , @pablocarb.bsky.social , and others. (Note: Won’t be streamed.) 🧬🤖 #Science #synbio
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Angel Goñi-Moreno @angelgm.eurosky.social · 15/01/2025
Massive upgrade to our preprint "Reprogramming genetic circuits using space": mathematical modeling, time-based experiments, new functions, more supplementary material... We're thrilled about this work and hope you enjoy it! www.biorxiv.org/content/10.1...
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Victor de Lorenzo (CNB, Madrid) @vdlorenzo.bsky.social · 20/11/2024
A SynBio-enabled (metabolic) love story 😍 Nothing is better for a lasting and efficent relationship than making partners depend on each other 👇
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Angel Goñi-Moreno @angelgm.eurosky.social · 20/11/2024
Great work by Pavel Dvorak's team, with our collaboration. Engineer stability in microbial consortia via reciprocal substrate processing. www.biorxiv.org/content/10.1...
biorxiv.org
Building a syntrophic Pseudomonas putida consortium with reciprocal substrate processing of lignocellulosic disaccharides
Synthetic microbial consortia can leverage their expanded enzymatic reach to tackle biotechnological challenges too complex for single strains, such as lignocellulose valorisation. The benefit of meta...
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Jesus Miro-Bueno @mirobueno.bsky.social · 20/11/2024
Thrilled to be part of this work! 👇 www.biorxiv.org/content/10.1...
biorxiv.org
Building a syntrophic Pseudomonas putida consortium with reciprocal substrate processing of lignocellulosic disaccharides
Synthetic microbial consortia can leverage their expanded enzymatic reach to tackle biotechnological challenges too complex for single strains, such as lignocellulose valorisation. The benefit of meta...
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