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Megan Carey

@meganecarey.bsky.social
107 followers 93 following 0 posts

infectious diseases epidemiology, vaccine science and policy, antimicrobial resistance, genomics @ LSHTM typhoidgenomics.org | amr.lshtm.ac.uk

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Reposted by Megan Carey
R-Ladies Amsterdam @rladiesamsterdam.bsky.social · 16/06/2025
🚨 New Event 🚨 From Code to Crisis Response: Using #rstats for Public Health Impact at the CDC w/ @kcharniga.bsky.social 📅 July 1, 2025 ⏰ 16:00-17:00 CET 🔗 www.meetup.com/rladies-amst... Join us to learn practical R applications in crisis response and beyond! #rladies #EpiSky #IDSky @rladies.org
R-Ladies Amsterdam event flyer for "From Code to Crisis Response: Using R for Real-World Public Health Impact at the CDC" presented by Kelly Charniga, PhD. The event is scheduled for Tuesday, July 1, 2025 from 16:00-17:00 CET. The flyer features the R-Ladies Amsterdam logo with illustrated Dutch buildings and a bicycle, and includes a photo of the smiling presenter wearing a light blue hoodie outdoors with a small dark dog.
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Quentin Leclerc @quentinlclrc.bsky.social · 19/06/2025
Nous recrutons un.e postdoc à @mesurs-cnam.bsky.social (Paris) pour modéliser des épidémies sur les réseaux de soins, dans le cadre du projet européen ARCANE ! 💻🦠 Début entre 09/25-01/26, contrat de 2 ans Intéressé par l'AMR, la recherche sur la santé & la modélisation mathématique? Plus d'infos ⬇️
iddjobs.org
IDDjobs — Postdoctoral position in epidemic modelling over healthcare networks — Conservatoire national des Arts et Métiers
Find infectious disease dynamics modelling jobs, studentships, and fellowships.
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Reposted by Megan Carey
Zamin Iqbal @zaminiqbal.bsky.social · 19/05/2025
Delighted to see this paper from danderson123.bsky.social 's PhD out. We have been building tools for AMR gene detection for over a decade now, but multicopy genes remain challenging. Dan shows that with a gene-space de Bruijn graph and long reads, you can do well www.biorxiv.org/content/10.1...
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Zoe Anne Dyson @msmicrobiocode.bsky.social · 09/05/2025
🧬 Out today 🧬 - our TyphiNET #AMR surveillance dashboard for #typhoid Use TyphiNET to view genome-derived data on global and national annual trends in AMR and circulating pathogen genotypes via any standard web browser. genomemedicine.biomedcentral.com/articles/10....
genomemedicine.biomedcentral.com
The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health - Genome Medicine
Background Salmonella enterica subspecies enterica serovar Typhi (abbreviated as ‘Typhi’) is the bacterial agent of typhoid fever. Effective antimicrobial therapy reduces complications and mortality; ...
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Jason Andrews @jasonandrews.bsky.social · 12/03/2025
Abruptly terminating funding to tuberculosis programs is equivalent to cutting power and water to a hospital without warning. There is no excuse for the way this was done, and many people will die as a result. Those responsible for the decision know this and are doing it anyways.
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LSHTM AMR Centre @lshtmamrcentre.bsky.social · 10/03/2025
Join us tomorrow for a seminar on antimicrobial resistance (AMR) in low-prevalence settings. Dr. Gunnar Skov Simonsen will discuss AMR dynamics in Scandinavian countries, focusing on E. coli and S. aureus. 📅 11 March 📍 LSHTM | Online 🔗 bit.ly/3Ftbl95
bit.ly
Studies of AMR population dynamics in a low-prevalence setting | LSHTM
Scandinavian countries generally have a low level of antibiotic consumption, high infection control standards and low prevalences of antimicrobial resistance (AMR). National surveillance systems,
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Madhu Pai, MD, PhD @madhupai.bsky.social · 28/02/2025
The sheer cruelty of the Trump administration is staggering Services to millions of people collapse as USAID cuts contracts worldwide www.reuters.com/business/hea...
reuters.com
Services collapsing as USAID cuts health contracts worldwide
U.S.-funded health projects around the world, including those providing lifesaving care, received termination notices from Washington on Thursday as President Donald Trump's administration neared completion of a review to ensure grants are aligned with its "America First" policy.
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Mat Beale @typemat12.bsky.social · 28/02/2025
One month left to apply for our long-running Applied Genomic Epi Course in Latin America (back in lovely Costa Rica this year)! coursesandconferences.wellcomeconnectingscience.org/event/genomi...
coursesandconferences.wellcomeconnectingscience.org
Genomics and Epidemiological Surveillance of Bacterial Pathogens — 20250706
Learn how to apply genomics to epidemiological surveillance of bacterial pathogens and public health.
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Madhu Pai, MD, PhD @madhupai.bsky.social · 17/02/2025
Hope As one EIS is under attack, a new EIS rises in Africa africacdc.org/african-epid...
africacdc.org
Africa Epidemic Service – Africa CDC
Public Health Informatics, Epidemiology, Laboratory Leadership
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Lars Barquist @lbarquist.bsky.social · 17/01/2025
Interested in predicting AMR in bacteria? We show ignoring phylogenetic structure in genome collections leads to overly optimistic evaluations of machine learning methods for AMR prediction. With @nwheeler443.bsky.social and former PhD student Yanying Yu. 🦠🧫🧬🖥️🧪 www.biorxiv.org/content/10.1...
biorxiv.org
Biased sampling confounds machine learning prediction of antimicrobial resistance
Antimicrobial resistance (AMR) poses a growing threat to human health. Increasingly, genome sequencing is being applied for the surveillance of bacterial pathogens, producing a wealth of data to train...
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silargi.bsky.social @silargi.bsky.social · 17/01/2025
Does your team deposit and access pathogen genomic data via data-sharing platforms for public health use? Participate in WHO's online consultation on the critical features of pathogen genomic data-sharing platforms to meet public health needs. All info here: www.who.int/news-room/ar...
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Finn McQuaid @cfmcquaid.bsky.social · 15/01/2025
Nutritional care for TB-affected households is likely to be highly cost-effective & could avert a substantial amount of disease and death in India – our paper out now in Lancet Global Health @raclark18.bsky.social @reinhouben.bsky.social @lshtm-tbmod.bsky.social www.sciencedirect.com/science/arti...
sciencedirect.com
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Nature Microbiology @natmicrobiol.nature.com · 13/01/2025
💊🦠OUT NOW - comprehensive analysis of the propensity of ESKAPE pathogens to evolve resistance to new and in development antibiotics by Csaba Pal, Balint Kintses, Balazs Papp and colleagues. Dive in here... www.nature.com/articles/s41...
nature.com
ESKAPE pathogens rapidly develop resistance against antibiotics in development in vitro - Nature Microbiology
An extensive experimental analysis of resistance to antibiotics in development or introduced post-2017 in ESKAPE bacteria reveals the dynamics of resistance acquisition, mutational targets and the pre...
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LSHTM AMR Centre @lshtmamrcentre.bsky.social · 10/01/2025
Climate change may fuel increasing prevalence of AMR, leading to a dual threat to global health. Rising temperatures, extreme weather, & environmental shifts may create conditions that enable drug-resistant infections to spread. Read @meganecarey.bsky.social ’s insights👇 bit.ly/4h0wO7a
bit.ly
Climate change and the escalating threat of Antimicrobial Resistance
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Alexandre Almeida @alexmsalmeida.bsky.social · 10/01/2025
Delighted to share the first peer-reviewed paper from our team @camvetschool.bsky.social where we investigate the ecological dynamics of Enterobacteriaceae in the human gut #microbiome: www.nature.com/articles/s41... @naturemicrobiol.bsky.social
nature.com
Ecological dynamics of Enterobacteriaceae in the human gut microbiome across global populations - Nature Microbiology
Assessing more than 12,000 metagenomic samples from across the world using computational approaches, the authors determined interactions between species that co-colonize or co-exclude Enterobacteriace...
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Kate Baker @ksbakes.bsky.social · 20/12/2024
Really excited to launch the new iteration of the Bakery as part of the Pathogen Dynamics Unit, co-led with @hsalje.bsky.social and @virologyhouldcroft.bsky.social Has been awesome working together this last year and really excited for things to come! Please follow and repost.
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Henrik Salje @hsalje.bsky.social · 20/12/2024
Really excited by the creation of this new Unit with @ksbakes.bsky.social and @virologyhouldcroft.bsky.social working on the emergence, spread and control of infectious diseases at the University of Cambridge
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Finn McQuaid @cfmcquaid.bsky.social · 11/12/2024
Undernutrition is a key driver of TB accounting for 1/5 cases, but relationship is poorly understood. New sys review of this based on 42 studies (>26 million people) by Matt Saunders et al: papers.ssrn.com/sol3/papers.... @reinhouben.bsky.social @raclark18.bsky.social @lshtm-tbmod.bsky.social
papers.ssrn.com
Tuberculosis Incidence and Body Mass Index – An Updated Systematic Literature Review and Global Analysis
Background: Undernutrition is the leading population-level determinant of tuberculosis, but the relationship between tuberculosis and nutritional status remains
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Kat Holt @katholt.bsky.social · 11/12/2024
Congratulations Professor Gwen Knight @gmknght.bsky.social, co-Director of @lshtmamrcentre.bsky.social and MRC Fellow, on promotion to Professor @lshtm.bsky.social - very richly deserved! Read Gwen's latest work on AMR surveillance and modelling 🧫👩‍💻🌍 doi.org/10.1371/jour... doi.org/10.1371/jour...
doi.org
Mathematical models of drug-resistant tuberculosis lack bacterial heterogeneity: A systematic review
Author summary The emergence of drug-resistant tuberculosis (DR-TB), where the causative bacterium Mycobacterium tuberculosis is resistant to key antibiotics such as rifampicin and isoniazid, poses a ...
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Kate Baker @ksbakes.bsky.social · 03/12/2024
The #AMR2024 conference report is out! www.nature.com/articles/s44... Read to re-live a great meeting or see what you missed! Thanks @charlotteechong.bsky.social and the amazing ECR team who led on this, and pls bookmark Mar 23 - 25 2026 in your calendars for #AMR2026 by @eventswcs.bsky.social
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Lori L. Burrows @dr-lori-burrows.bsky.social · 05/12/2024
Really scary - NDM-1-producing #Klebsiella pneumoniae and other essentially untreatable XDR pathogens are infecting injured soldiers. New antibiotics can't come fast enough. www.science.org/content/arti... #AMR
science.org
War-torn Ukraine has become a breeding ground for lethal drug-resistant bacteria
Urgent action underway to prevent dangerous microbes from spreading beyond country's borders
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Tim Dallman @tdallman.bsky.social · 04/12/2024
Please join us at 13:00 CET December 12th for the next edition of the IPSN webinar series 'Pathogen Genomics in Health Emergencies' to hear how genomics can contribute to the understanding of Cholera outbreaks. Register here:
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Reposted by Megan Carey
Kate Baker @ksbakes.bsky.social · 27/11/2024
Recent review on Shigella sonnei rdcu.be/d1DGx
rdcu.be
Shigella sonnei: epidemiology, evolution, pathogenesis, resistance and host interactions
Nature Reviews Microbiology - In this Review, Scott et al. review our current knowledge of Shigella sonnei, highlighting recent insights into this globally disseminated antimicrobial-resistant...
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Susie Dent @susiedentwords.bsky.social · 24/11/2024
Word of the day is ‘librocubicularist’: one who loves nothing better than reading in bed. (Not easy to say, but I’m glad to know it exists).
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Dr. Amy Lee @minisciencegirl.bsky.social · 21/11/2024
Every year, >200K newborns die from sepsis. Our team used machine learning to develop a set of genes that can predict neonatal sepsis risk using at birth blood samples. www.thelancet.com/journals/ebi...
thelancet.com
Predictive gene expression signature diagnoses neonatal sepsis before clinical presentation
Despite appearing healthy at birth, neonates who later developed EOS already had distinct whole blood gene expression changes at birth, which enabled the development of a 4-gene predictive signature f...
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LSHTM AMR Centre @lshtmamrcentre.bsky.social · 22/11/2024
Prof Keertan Dheda at @lshtm.bsky.social and University of Cape Town shares his insights on the alarming rise of bedaquiline resistance in South Africa, a major challenge for TB treatment. This #WAAW2024, let’s raise awareness and advocate for action! Read more: bit.ly/4fYqxrX
Mobile clinic from the XACT-3 study deployed in a low-income area, using on-site TB and HIV diagnostics to actively screen and identify cases in the community.
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Shaun Keegan @shaunkeegan.bsky.social · 21/11/2024
Ready for and starting on our dinner cruise along the Seine 🇫🇷 Incl. @meganecarey.bsky.social, Laura and Shaojie
Myself and two colleagues in front of the Eiffel Tower Myself and two colleagues on the Sienne dinner boat
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Kat Holt @katholt.bsky.social · 20/11/2024
A small history lesson in #Klebsiella genomics in honour of #KLEBS24… 2009 was a big year for Klebs! - First genome published - First description of ST258 KPC-producing clone pubmed.ncbi.nlm.nih.gov/19218573/ - First description of NDM-1 beta-lactamase pubmed.ncbi.nlm.nih.gov/19770275/
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LSHTM AMR Centre @lshtmamrcentre.bsky.social · 19/11/2024
Our Co-Director @gmknght.bsky.social sheds light on the importance of understanding how AMR impacts different populations. This knowledge is vital for optimising interventions. Stay tuned for updates on this #WorldAntimicrobialAwarenessWeek as we #EducateAdvocateAct to combat #AMR.
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Caitlin Rivers @cmyeaton.bsky.social · 17/11/2024
What data should be reported in an outbreak situation report? That's the question my colleagues and I set out to answer in a new(ish) preprint. We developed consensus guidelines to promote accountability, transparency, and effective response www.medrxiv.org/content/10.1...
medrxiv.org
Public reporting guidelines for outbreak data: Enabling accountability for effective outbreak response by developing standards for transparency and uniformity
Currently, there are few standards for what essential information about an infectious disease outbreak should be reported to the public and when. The content and timeliness of public reporting (e.g. s...
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