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Zoe Anne Dyson

@msmicrobiocode.bsky.social
579 followers 640 following 6 posts

Assistant Professor @LSHTM. Co-Deputy Director of the LSHTM DASH Centre. Co-coordinator of the Global Typhoid Genomics Consortium. Editor at mSystems. Bacterial pathogen genomics, genetic epidemiology, transmission dynamics, and AMR. Views mine. She/her

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Reposted by Zoe Anne Dyson
Kate Baker @ksbakes.bsky.social · 21/04/2026
@yekwah.bsky.social launches FlexIt: the S. flexneri genotyping scheme at @shigellameeting.bsky.social 🎉
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Reposted by Zoe Anne Dyson
Data & Statistical Science for Health, LSHTM @lshtm-dash.bsky.social · 27/01/2026
📆 Join next week's webinar on Salmonella Typhia genomics & #AMR surveillance being given by @msmicrobiocode.bsky.social
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Zoe Anne Dyson @msmicrobiocode.bsky.social · 13/11/2025
London interdisciplinary #PhD position now open with myself, @sergemostowylab.bsky.social, & @gmknght.bsky.social on #phage -bacteria-host immune dynamics for WHO priority bacterial pathogens #Klebsiella, #Shigella, and #Staph. Combines cellular microbiology, genomics, & mathematical modelling.
mrc-lid.lshtm.ac.uk
2026-27 Project (Dyson & Mostowy & Knight) - MRC London Intercollegiate Doctoral Training Partnership Studentships
PHACTS: Unravelling PHAge-baCTeria-host immune dynamicS to inform phage therapy SUPERVISORY TEAM Supervisor Dr Zoe Dyson...
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IDDjobs @iddjobs.org · 11/11/2025
PhD position (London, UK) Generating microbiology data and paired mathematical modelling with @msmicrobiocode.bsky.social @gmknght.bsky.social @sergemostowylab.bsky.social at @lshtm.bsky.social More details: iddjobs.org/jobs/2405
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Louise Cerdeira @louisecerdeira.bsky.social · 06/11/2025
🚨 New paper out on @narjournal.bsky.social. Many thanks to everyone involved, especially the project leader Professor @katholt.bsky.social and the wonderful #AMRnet team: @msmicrobiocode.bsky.social, Vandana Sharma, Mary Maranga, Ebenezer Foster-Nyarko, Megan Carey academic.oup.com/nar/advance-...
academic.oup.com
AMRnet: a data visualization platform to interactively explore pathogen variants and antimicrobial resistance
Abstract. Antimicrobial resistance (AMR) poses a substantial threat to global public health. Whole genome sequencing is increasingly used as a core method
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medRxivpreprint @medrxivpreprint.bsky.social · 30/06/2025
Distribution of capsule and O types in Klebsiella pneumoniae causing neonatal sepsis in Africa and South Asia: meta-analysis of genome-predicted serotype prevalence and potential vaccine coverage www.medrxiv.org/content/10.1101/202…
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Reposted by Zoe Anne Dyson
Data & Statistical Science for Health, LSHTM @lshtm-dash.bsky.social · 23/06/2025
🚨 Last chance to sign up for an online space at Thursday's symposium on target trial emulation (TTE) and other frameworks Sign up 🔽
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Emma Waters @emmabeansworth.bsky.social · 25/06/2025
Coming up next at #I3S #I3Scongress is @nisbetalice.bsky.social showing a summary of 20 years of #typhoidal #Salmonella in England & Wales. She is excited to present here as she prepares this for publication and as this is her first international talk. We are hanging around if you have any Qs.
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senjutisaha.bsky.social @senjutisaha.bsky.social · 23/06/2025
One ceftriaxone-resistant #typhoid case last year set us on a path that is now live on Emerging Infectious Diseases. 47 cases in months, resistance rose from 0 to 5%. We spoke with patients, sequenced samples. 4.3.1.2.B1 lineage+blaCTX-M-15 on pCROB1. #AMR #PublicHealth wwwnc.cdc.gov/eid/article/...
wwwnc.cdc.gov
Outbreak of Ceftriaxone-Resistant <em>Salmonella enterica</em> Serovar Typhi, Bangladesh, 2024
Ceftriaxone-Resistant <em>Salmonella</em> Typhi, Bangladesh
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Data & Statistical Science for Health, LSHTM @lshtm-dash.bsky.social · 12/05/2025
🥇 Congratulations to @msmicrobiocode.bsky.social who was one of the winners of the @lshtmamrcentre.bsky.social Publication Prize She received the Staff Prize for her work analysing AMR typhoid infections in Bangladesh, Nepal, and Malawi Find out why 🔽 www.lshtm.ac.uk/research/cen...
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Zoe Anne Dyson @msmicrobiocode.bsky.social · 09/05/2025
🧬 Out today 🧬 - our TyphiNET #AMR surveillance dashboard for #typhoid Use TyphiNET to view genome-derived data on global and national annual trends in AMR and circulating pathogen genotypes via any standard web browser. genomemedicine.biomedcentral.com/articles/10....
genomemedicine.biomedcentral.com
The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health - Genome Medicine
Background Salmonella enterica subspecies enterica serovar Typhi (abbreviated as ‘Typhi’) is the bacterial agent of typhoid fever. Effective antimicrobial therapy reduces complications and mortality; ...
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LSHTM AMR Centre @lshtmamrcentre.bsky.social · 06/05/2025
📣 🎉 Congratulations to Ms Gladys and @msmicrobiocode.bsky.social on winning our 2025 Publication Prize at @lshtm.bsky.social 🏆 Read more about their winning papers and impactful AMR research🔬 👇 bit.ly/4iM7uCh
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LSHTM AMR Centre @lshtmamrcentre.bsky.social · 06/05/2025
@msmicrobiocode.bsky.social won the Staff Prize for her work revealing that most AMR typhoid infections in Bangladesh, Nepal, and Malawi are driven by ongoing local transmission of existing resistant strains—not new variants.
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Zoe Anne Dyson @msmicrobiocode.bsky.social · 02/02/2025
biorxiv.org
AmpliconTyper tool for analysing ONT multiplex PCR data from environmental and other mixed sources
Amplicon sequencing is a popular method for understanding the diversity of bacterial communities in mixed samples as exemplified by 16S rRNA metagenome sequencing. This approach has been extended into...
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Reposted by Zoe Anne Dyson
Ryan Wick @rrwick.bsky.social · 31/12/2024
New year, new assemblies! I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes! It's the successor to Trycycler, designed to be faster and less reliant on user intervention. Check it out: github.com/rrwick/Autoc... (1/5)
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A tool for generating consensus long-read assemblies for bacterial genomes - rrwick/Autocycler
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