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Andreas Lossius

@lossiusandreas.bsky.social
365 followers 567 following 4 posts

Associate Professor at the University of Oslo. A neuroimmunologist who loves B cells, Beethoven and Burgers.

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Andreas Lossius @lossiusandreas.bsky.social · 10/06/2026
Working with B cells, antibodies or scRNA-seq? GATHeR is now out in Nature Communications: a new tool for full-length paired BCR reconstruction from scRNA-seq, recovering constant-region, isoform and clonal lineage information. www.nature.com/articles/s41...
nature.com
GATHeR: graph-based accurate tool for immunoglobulin heavy- and light-chain reconstruction - Nature Communications
Single cell RNA sequencing expanded the possibilities of capturing immune repertoires in lymphocytes but assembling long sequences from the individual reads, especially in naive and memory B cells wit...
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Andreas Lossius @lossiusandreas.bsky.social · 07/03/2026
Norway: Open postdoc position in immunology and bioinformatics 2411.webcruiter.no/Main2/Recrui...
2411.webcruiter.no
Postdoctor
Postdoctoral Fellow in Immunology and BioinformaticsA three-year postdoctoral position in immunology and bioinformatics is available at the Neuroimmunology Research Group at Akershus University Hospit...
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AIRR-Community @airr-community.bsky.social · 27/02/2026
🚀 Registration is now OPEN for AIRR Community Meeting VIII: Decoding and Recoding Immunity! Join us June 8–11, 2026 at Yale University (USA) or attend virtually. 💸 Early-bird rates available until April 15! 🔗 Register: tinyurl.com/airrcmeeting8 #AIRRC8 #immunosky
tinyurl.com
AIRR Community Meeting VIII.
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Gisela Gabernet @ggabernet.bsky.social · 01/03/2026
Join us this June at Yale for the AIRR Community Meeting VIII, gathering experts in AIRR research around the world!
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Waggoner Lab @labwaggoner.bsky.social · 05/01/2026
@biorxivpreprint.bsky.social @lossiusandreas.bsky.social Putative target antigens of the stereotyped intrathecal B cell response in multiple sclerosis www.biorxiv.org/content/10.6...
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Rasmus Iversen @rasmusi.bsky.social · 19/12/2025
A 3-year postdoc position in experimental immunology is available in our lab at Oslo University Hospital. If you know someone who is interested in B cells and autoimmunity, please spread the word! You can find more information and apply for the position here: 2411.webcruiter.no/Main2/Recrui...
2411.webcruiter.no
Postdoctoral Research Fellowship in Immunology
A 3-year postdoctoral fellowship is available at the Department of Immunology, Oslo University Hospital. The position will be located in the lab of Dr. Rasmus Iversen and will be available from March ...
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Håvard Lindholm @havardtl.bsky.social · 20/12/2025
A PhD fellowship in our lab is available. If you or someone you know is interested in exploring how we can activate antiviral responses to kill cancer cells, please spread the word! Don't hesitate to get in touch if you have any questions. Link: www.nature.com/naturecareer...
nature.com
PhD fellowship in cancer research - Oslo, Østlandet (NO) job with Oslo University Hospital - Department of Pathology | 12851095
A fully funded three-year full-time PhD fellowship in cancer research is available at the Department of Pathology, Oslo University Hospital, Norway.
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Corey Watson @cdubsig.bsky.social · 02/12/2025
Happy to see this work on IG light chains from @e-engelbrecht1.bsky.social in press www.nature.com/articles/s41... How else will germline variation impact the expressed repertoire? Can't wait to see! Thanks to awesome collabs: @williamlees.bsky.social @guryaari.bsky.social @ayeletperes.bsky.social
nature.com
Germline polymorphisms in the immunoglobulin kappa and lambda loci underpinning antibody light chain repertoire variability - Nature Communications
Antibody response variability contributes to differential individual responses and disease outcomes. Here authors show that genetic variation to the IG kappa and IG lambda loci is an important determi...
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Corey Watson @cdubsig.bsky.social · 07/11/2025
🧬 VDJbase and OGRDB: 3000+ IG/TR samples across human and rhesus macaque with curated AIRR-seq and long-read genomic data. LET'S CHANGE THE WAY WE UTILIZE IG/TR GENOMIC AND REPERTOIRE DATA! @guryaari.bsky.social @williamlees.bsky.social @ayeletperes.bsky.social academic.oup.com/nar/advance-...
academic.oup.com
The current landscape of adaptive immune receptor genomic and repertoire data: OGRDB and VDJbase
Abstract. Accurate characterization of adaptive immune receptor repertoires through high-throughput sequencing is critical for understanding immune respons
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Corey Watson @cdubsig.bsky.social · 28/10/2025
Happy to announce the publication of our work exploring under-appreciated genetic diversity in the human IGHC region. Awesome work by @uddalok.bsky.social. So grateful for our amazing co-authors. @williamlees.bsky.social @guryaari.bsky.social @ayeletperes.bsky.social www.cell.com/cell-genomic...
cell.com
The human IG heavy chain constant gene locus is enriched for large structural variants and coding polymorphisms that vary among human populations
Genetic variation within immunoglobulin heavy chain constant (IGHC) genes modulates interactions between antibodies and other immune receptors and effector cells, directing cell killing and the cleara...
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Greifflab @victorgreiff.bsky.social · 22/10/2025
📢 We are announcing the Adaptive Immune Profiling Challenge 2025! Can you predict immune state labels from adaptive immune receptor repertoires? 💰 $10,000 prize pool! 🗓️ Launches Nov 5 on @kaggle.com More Info: uio-bmi.github.io/adaptive_imm...
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Greifflab @victorgreiff.bsky.social · 28/09/2025
We’re recruiting a PhD Fellow in Computational Systems Immunology. Work on large-scale immune receptor datasets and develop computational models in close collaboration with experimental labs. Apply here: www.jobbnorge.no/en/available...
jobbnorge.no
PhD Fellowship in Computational Systems Immunology (286608) | University of Oslo
Job title: PhD Fellowship in Computational Systems Immunology (286608), Employer: University of Oslo, Deadline: Wednesday, October 15, 2025
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Mari B. Gornitzka @maribgo.bsky.social · 22/09/2025
Interested in BCR analysis, including paired heavy-light chain and constant region?👀 Check out our new tool for reconstructing BCRs from scRNAseq! Compatible with 10x and Smart-seq🧬 www.biorxiv.org/content/10.1...
biorxiv.org
GATHeR: Graph-based Accurate Tool for Immunoglobulin HEavy- and Light-chain Reconstruction
Recovering full-length, paired B-cell receptor (BCR) sequences from scRNA-seq reads remains difficult, especially in naive and memory B cells where immunoglobulin transcripts are sparse. Current metho...
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Andreas Lossius @lossiusandreas.bsky.social · 22/09/2025
New BCR reconstruction tool for scRNA-seq: assembles full heavy & light chains and annotates constant regions. Check it out: www.biorxiv.org/content/10.1... #scRNAseq #immunology
biorxiv.org
GATHeR: Graph-based Accurate Tool for Immunoglobulin HEavy- and Light-chain Reconstruction
Recovering full-length, paired B-cell receptor (BCR) sequences from scRNA-seq reads remains difficult, especially in naive and memory B cells where immunoglobulin transcripts are sparse. Current metho...
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Reposted by Andreas Lossius
Rasmus Iversen @rasmusi.bsky.social · 07/07/2025
Very happy to share our latest preprint, where we address the relationship between systemic and gut IgA. See link below and details in 🧵. Huge thanks to everyone involved! www.biorxiv.org/content/10.1...
biorxiv.org
Distinct systemic and gut IgA responses to bacteria of the human upper gastrointestinal tract
The mucosa lining the gastrointestinal tract harbors the body's largest population of plasma cells, most of which produce dimeric IgA destined for release into the lumen. In addition, there is systemic production of monomeric IgA circulating in the blood. Little is known about the connection between systemic and mucosal IgA. To address this relationship and to explore antibody responses against the microbiota, we isolated bacteria from duodenal biopsies and assessed antibody reactivity. Systemic IgA showed reactivity to bacteria of the upper gastrointestinal tract with a preference for binding Neisseria species, while duodenal IgA showed broader reactivity. We found limited clonal overlap between gut and bone marrow plasma cells of individual donors, yet a few shared clones specific to bacterial antigens were identified. Despite showing clonal overlap, gut and bone marrow plasma cells have distinct IgA subclass distributions, and they likely depend on B-cell activation at discrete anatomical sites. ### Competing Interest Statement The authors have declared no competing interest. Kristian Gerhard Jebsen Foundation, https://ror.org/021g6tq38, SKGJ-MED-017 Southern and Eastern Norway Regional Health Authority, https://ror.org/02qx2s478, 2022071 University of Oslo, https://ror.org/01xtthb56, WL-IMMUNOLOGY, Scientia Fellows II
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Corey Watson @cdubsig.bsky.social · 29/05/2025
New preprint from our group in collaboration with the awesome Prof. Ranjan Sen (NIH). We show that IGH polymorphisms establish inter-individual differences in the pro-B antibody repertoire that persist into the naive B cell pool. Oscar L. Rodriguez is killing it! www.biorxiv.org/content/10.1...
biorxiv.org
Human genetic variation shapes the antibody repertoire across B cell development
The peripheral antibody repertoire is shaped by inherited genetic variation and selection during B cell development. However, how the repertoire changes across developmental stages—and the relative im...
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Corey Watson @cdubsig.bsky.social · 02/06/2025
Turns out...just like in the antibody heavy chain repertoire, germline variants in the immunoglobulin lambda and kappa loci influence the composition of light chain B cell receptors! Way to go Eric @e-engelbrecht1.bsky.social !!!! www.biorxiv.org/content/10.1...
biorxiv.org
Germline polymorphism in the immunoglobulin kappa and lambda loci explain variation in the expressed light chain antibody repertoire
Variation in antibody (Ab) responses contributes to disease outcomes and therapeutic responsiveness, the determinants of which remain incompletely understood. This study demonstrates that polymorphism...
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Asbjørn Christophersen @immunebjorn.bsky.social · 08/05/2025
We have available a 3-year postdoc position in Bioinformatics in our lab at the University of Oslo focusing on the adaptive immune response in rheumatoid arthritis. Please see details here lds.easycruit.com/vacancy/3490...
lds.easycruit.com
Lovisenberg Diakonale Sykehus
Postdoctoral research fellowship in Bioinformatics and Immunology (3-year, full-time)
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Corey Watson @cdubsig.bsky.social · 13/02/2025
Did you know that human immunoglobulin constant genes are crazy diverse? It's got me thinking...Proud of Uddalok Jana! And grateful for collabs @guryaari.bsky.social @williamlees.bsky.social @ayeletperes.bsky.social @e-engelbrecht1.bsky.social @yscientist.bsky.social www.biorxiv.org/content/10.1...
biorxiv.org
The human immunoglobulin heavy chain constant gene locus is enriched for large complex structural variants and coding polymorphisms that vary in frequency among human populations
The immunoglobulin heavy chain constant (IGHC) domain of antibodies (Ab) is responsible for a variety of effector functions critical to Ab mediated immunity. In human, this domain is encoded by genes ...
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Corey Watson @cdubsig.bsky.social · 18/12/2024
Check out long-read sequencing results in human IGH! HUGE duplications in constant gene regions...and 7 copies of IGHV3-23 on one haplotype! @lossiusandreas.bsky.social @williamlees.bsky.social www.biorxiv.org/content/10.1...
biorxiv.org
Ultra-long sequencing for contiguous haplotype resolution of the human immunoglobulin heavy chain locus
Genetic diversity within the human immunoglobulin heavy chain (IGH) locus influences the expressed antibody repertoire and susceptibility to infectious and autoimmune diseases. However, repetitive seq...
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Andreas Lossius @lossiusandreas.bsky.social · 18/12/2024
Our collaborative paper on #Nanopore sequencing is now available on #BioRxiv. Among several new variants, we characterize a large duplication in the IGHC region, suggesting non-canonical class switching between the duplicated isotypes in #Bcells. www.biorxiv.org/content/10.1...
biorxiv.org
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