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Karine ALAIN

@kalainxtremmicrob.bsky.social
23 followers 25 following 2 posts

Research Director at the CNRS, fascinated by microbial physiology and its metabolic versatility, with particular interests in novel metabolic pathways, taxonomy, ecology, and geomicrobiology of microbiomes from extreme environments.

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Reposted by Karine ALAIN
Simonetta Gribaldo @sgribaldo.bsky.social · 23/09/2026
Interested in #archaea, #methane, #cell-envelopes? New paper out @nature.com ! We discovered an enzyme that specifically cleaves the cell wall of methanogens, revealing a new chemical structure of archaeal peptidoglycan, 50 yrs after its first description www.nature.com/articles/s41... #MicroSky 🧵👇
nature.com
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Cameron Thrash @jcamthrash.bsky.social · 27/08/2026
Multiheme selenoenzyme essential for elemental sulfur respiration www.science.org/doi/full/10.... #jcampubs
science.org
Multiheme selenoenzyme essential for elemental sulfur respiration
Elemental sulfur reduction is a key process in anaerobic ecosystems and the global sulfur cycle. Although elemental sulfur serves as a terminal electron acceptor in microbial respiration, the molecula...
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Lukas VF Novak @animalculum.bsky.social · 20/08/2026
Two new papers from our team! Both about #DeepSea #Bacteria living on #sulfur. By @kalainxtremmicrob.bsky.social #Genomics of Desulfobulbaceae B35: www.sciencedirect.com/science/arti... #Proteomics of Dissulfuribacter thermophilus: enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...
collage of figures from the two linked papers
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Cameron Thrash @jcamthrash.bsky.social · 20/05/2026
Phylogenomic and metabolic insights into iron reduction metabolism in the genus Deferribacter belonging to the order Deferribacterales www.microbiologyresearch.org/content/jour... #jcampubs
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Tominaga K. (tomiken) @pacyc184.bsky.social · 02/05/2026
Beyond methanogenesis: expanding roles for methanogenic archaea: Trends in Microbiology www.cell.com/trends/microbiology/ab…
cell.com
Beyond methanogenesis: expanding roles for methanogenic archaea
As key players in anoxic environments, methanogenic archaea account for the vast majority of biogenic methane emissions and play important roles during organic matter mineralization. Growing evidence indicates potential for broader ecological roles beyond methanogenesis. This review summarizes the physiology of biogeochemically relevant transformations of iron minerals, humic acid, biochar, and toxic heavy metals/metalloids. We examine how methanogenic archaea couple carbon cycling with other element cycles through methanogenic pathways and electron transfer processes. We also discuss known and potential molecular mechanisms that underlie these interactions. Furthermore, we highlight the discovery of the reversal of methanogenesis driven by extracellular electron transfer and its potential for methane bioconversion technologies. This work underscores the physiological versatility of methanogenic archaea, suggesting their diverse roles in biogeochemical cycles.
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Reposted by Karine ALAIN
Cameron Thrash @jcamthrash.bsky.social · 27/04/2026
A family of ribosome hibernation factors widespread in Archaea www.nature.com/articles/s41... #jcampubs
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Reposted by Karine ALAIN
Cameron Thrash @jcamthrash.bsky.social · 12/04/2026
Breathing both ways: simultaneous aerobic–anaerobic respiration in microbes www.cell.com/trends/micro... #jcampubs
cell.com
Breathing both ways: simultaneous aerobic–anaerobic respiration in microbes
Microorganisms have historically been classified as obligate aerobes or anaerobes, facultative anaerobes, or microaerophiles, reflecting differences in respiratory strategies dictated by the use of ox...
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Loïs Maignien, PhD. @loimai.bsky.social · 10/03/2026
Very happy to share the latest paper of our group (et al.)! rdcu.be/e7zyX . This one has a special place… 1/n
rdcu.be
Water mass specific genes dominate the Southern Ocean microbiome
Nature Communications - Southern Ocean microbial communities are less well studied. Here, the authors generate a circumpolar-scale gene catalog from 218 metagenomics samples revealing broadscale...
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Lukas VF Novak @animalculum.bsky.social · 02/03/2026
New paper from my 2nd PostDoc is now published in The ISME Journal by @isme-microbes.bsky.social! #Sulfur disproportionation occurs globally across anoxic habitats & has multiple mechanisms of independent evolutionary origin academic.oup.com/ismej/advanc... #Bacteria #Microbes #Evolution #DeepSea
a figure from the linked paper which shows A) a world map and B) a schematic representation of various natural and artificial habitats, both annotated with information about which sulfur disproportionating bacteria have been found in the specific regions and environments
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Cameron Thrash @jcamthrash.bsky.social · 02/03/2026
Sulfur disproportionation occurs globally across anoxic habitats and has multiple mechanisms of independent evolutionary origin academic.oup.com/ismej/advanc... #jcampubs
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Pierre Simon Garcia @pierresimongarcia.bsky.social · 03/02/2026
Passioned by #bioenergetics? Do not miss our new article on the evolutionary history of oxidoreductases with G. Borrel and @sgribaldo.bsky.social @archaeal.bsky.social @valdeanda.bsky.social @pasteur.fr @cnrs.fr @cnrsbiologie.bsky.social @natecoevo.nature.com (www.nature.com/articles/s41...).
nature.com
Evolution and diversity of oxidoreductases involved in redox balance and energy conservation - Nature Ecology & Evolution
HORBEC are protein complexes involved in the regulation of redox balance and energy conservation. The authors develop a bioinformatic tool for HORBEC annotation in bacterial and archaeal genomes and r...
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John Lees @johnlees.bacpop.org · 30/01/2026
We are hiring for group leaders again — EBI is a great place to start your research group! embl.wd103.myworkdayjobs.com/EMBL/job/Hin...
embl.wd103.myworkdayjobs.com
Research Group Leader
Do you want to lead groundbreaking research in computational biology? Join us at EMBL-EBI! EMBL's European Bioinformatics Institute (EMBL-EBI) is seeking talented and highly-motivated scientists to jo...
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David Shiffman, Ph.D. 🦈 @whysharksmatter.bsky.social · 24/01/2026
How the ocean’s hydrothermal systems made the first life on Earth possible
theconversation.com
How the ocean’s hydrothermal systems made the first life on Earth possible
Researchers have discovered that chemical reactions in underwater hydrothermal vents could have produced the necessary ingredients for life on Earth.
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Cameron Thrash @jcamthrash.bsky.social · 22/01/2026
Our latest. Led by the very talented @ahoiching.bsky.social Cell cycle dysregulation of globally important SAR11 bacteria resulting from environmental perturbation www.nature.com/articles/s41... #jcampubs 🌊
nature.com
Cell cycle dysregulation of globally important SAR11 bacteria resulting from environmental perturbation - Nature Microbiology
Without key cell cycle control genes, SAR11 cells experience aneuploidy and growth inhibition when exposed to changes in nutrients, carbon sources or temperature stress, a vulnerability that may repre...
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Cameron Thrash @jcamthrash.bsky.social · 12/01/2026
Genomic adaptation strategies to habitat switching in Korarchaeota www.science.org/doi/full/10.... #jcampubs
science.org
Genomic adaptation strategies to habitat switching in Korarchaeota
The adaptation of Korarchaeota across changing habitats tracks their coevolution with Earth throughout its dynamic history.
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Florian Trigodet @floriantrigodet.bsky.social · 06/01/2026
Now published in Nature Biotechnology: go.nature.com/44P7nSm If you missed it, the TL;DR is in my April thread below
go.nature.com
Troubleshooting common errors in assemblies of long-read metagenomes - Nature Biotechnology
Long-read sequence assemblies from metagenomes contain frequent errors.
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Roland Hatzenpichler @environmicrobio.bsky.social · 12/12/2025
“Cultivation of Methanonezhaarchaeia, the third class of methanogens within the phylum Thermoproteota” by @kohtzarchaeota.bsky.social, Sylvia Nupp, and myself is out in Science Advances. 90% enriched culture of a methyl-dismutating thermoproteotal methanogen. #Microsky 🧪 tinyurl.com/bdcc3uzs
science.org
Cultivation of Methanonezhaarchaeia, the third class of methanogens within the phylum Thermoproteota
The cultivation of a group of methanogens illuminates their metabolic diversity and the evolution of archaea.
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Yann Moalic @drym.bsky.social · 22/11/2025
Our study on ribonucleotides incorporation the genomes of Haloferax volcanii and Thermococcus barophilus is new published in #NAR #ribonucleasesH academic.oup.com/nar/article/...
academic.oup.com
Validate User
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Michael Wagner @michiwagner4.bsky.social · 21/11/2025
Congratulations @daanspeth.bsky.social and the whole team. GlobDB has already been very helpful for several projects at @cemess.bsky.social, and it will no doubt be a useful resource for many microbiologists around the world. Really glad to see it out there.
daanspeth.bsky.social
Daan Speth (@daanspeth.bsky.social)
Computational microbiologist. Senior scientist at @cemess.bsky.social, @univie.ac.at. Microbial ecology, mostly of nitrogen cycle microbes, and data driven physiology. Maintainer of the GlobDB geno...
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A. Murat Eren (Meren) @merenbey.bsky.social · 20/11/2025
We have a date for the free-to-attend #anvio workshop and ECR Symposium for 2026, and we look forward to meeting you at the @hifmb.de in Oldenburg, Germany! Please find more information on the venue, program, and the application form here, and spread the word 😇 anvio.org/workshops/20...
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MARUM @marumunibremen.bsky.social · 20/10/2025
A new review study shows the invisible transport pathways for #iron through #hydrothermal plumes. More on Iron’s Irony here ➡️ www.marum.de/en/Iron-sIro... @icbm-uol.bsky.social #ConstructorUniversity @geomarkiel.bsky.social @awi.de @marumunibremen.bsky.social
A hydrothermal vent on the Mid-Atlantic Ridge. Hot, mineral-rich fluids are distributed throughout the ocean via the dispersion cloud, known as the plume. The photo was taken during the M190 research expedition with the MARUM-QUEST4000 remotely operated vehicle. The arm of the robot holds a temperature lance into the plume to measure the temperature there. Photo: MARUM – Center for Marine Environmental Sciences, University of Bremen.
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Alex Probst @alexjprobst.bsky.social · 26/09/2025
New article on equitable reuse of public sequencing data, published in @natmicrobiol.nature.com! Led by the Data reuse core team @lhug.bsky.social @environmicrobio.bsky.social Cristina Moraru, @geomicrosoares.bsky.social, @folker.bsky.social and with Anke Heyer and The Data Reuse Consotrium!
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Alex Loy @loyteam.bsky.social · 27/08/2025
📢 New paper in @nature.com Microbes rock 🎸🤘 with sulfide and iron minerals I am very excited to share our recent study, which describes a previously unknown microbial energy metabolism ⚡⚡⚡🦠🧫⚡⚡⚡ 🆕 Microbial iron oxide respiration coupled to sulfide oxidation - MISO www.nature.com/articles/s41...
nature.com
Microbial iron oxide respiration coupled to sulfide oxidation - Nature
Genomic and biochemical analyses of prokaryotic sulfur metabolism identify diverse microorganisms with the capacity to oxidize sulfide using iron(iii).
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Heidi Aronson, PhD @heidi-aronson.bsky.social · 27/08/2025
Phosphite oxidizers 🤝 Methanogens In our new paper on “Lithosyntrophy” we show that phosphite oxidation drives methanogenesis through interspecies H2 transfer. Lithosyntrophy establishes a novel mechanistic link between the #phosphorus and carbon redox cycles
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Kenneth Wasmund @kennethwasmund.bsky.social · 28/08/2025
also the HMM suite for an extensive array of sulfur enzymes is very handy (already used it!) ! :-)
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Universität Wien / University of Vienna @univie.ac.at · 28/08/2025
Bacteria that 'breathe' rocks and sulphur. 🦠🧫 An international team of scientists led by #microbiologists @loyteam.bsky.social and Marc Mussmann have uncovered #bacteria that remove toxic sulfide and use iron #minerals for growth. 🧪🧑‍🔬 Read more here: ⤵️ @cemess.bsky.social
univie.ac.at
Bacteria that "breathe" rocks and Sulfur
Microbiologists uncover bacteria that remove toxic sulfide and use iron minerals for growth
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STCmicrobeblog @stcmicrobeblog.bsky.social · 29/08/2025
#MicroSky
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Cameron Thrash @jcamthrash.bsky.social · 15/08/2025
An organotrophic Sideroxydans reveals potential iron oxidation marker genes journals.asm.org/doi/full/10.... #jcampubs
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Cameron Thrash @jcamthrash.bsky.social · 11/08/2025
The emergence of metabolisms through Earth history and implications for biospheric evolution royalsocietypublishing.org/doi/full/10.... #jcampubs
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Cameron Thrash @jcamthrash.bsky.social · 11/08/2025
Bioenergetics evolution: the link between Earth’s and Life’s history royalsocietypublishing.org/doi/full/10.... #jcampubs
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The Probst Lab @probstlab.bsky.social · 07/08/2025
Fresh out of the oven! 🍞 We're happy to see this preprint out, fruit of a recent collaboration with @wei-biogeochem.bsky.social! 🧬💻 Small 🧵 below going through the main points 👇 www.biorxiv.org/content/10.1...
biorxiv.org
Uranium mining fuels evolution in deep groundwater microbiomes
Microbial communities in the deep biosphere underpin global biogeochemical cycles, yet their evolutionary responses to extensive anthropogenic disturbances remain unclear. Uranium in-situ leaching (IS...
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Karine ALAIN @kalainxtremmicrob.bsky.social · 27/07/2025
youtu.be/tPfGzJubvxQ
youtu.be
Submarine volcano Fani Maoré hosts full sulfur-cycling microbial community within 3 years of its...
YouTube video by AJE Video Bytes
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Karine ALAIN @kalainxtremmicrob.bsky.social · 27/07/2025
Our new paper is out: Sulfur-rich deposits associated with the deep submarine volcano Fani Maoré support broad microbial sulfur cycling communities doi.org/10.1186/s401... Video: youtu.be/tPfGzJubvxQ
doi.org
Sulfur-rich deposits associated with the deep submarine volcano Fani Maoré support broad microbial sulfur cycling communities - Microbiome
Background In 2018, the island of Mayotte located in the western Indian ocean, has experienced a seismo-volcanic crisis linked to the birth of an impressive intraplate submarine volcano at the east of...
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