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Alex Loy

@loyteam.bsky.social
845 followers 611 following 37 posts

Professor for Microbial Communities @dome-vienna.bsky.social @cemess.bsky.social University of Vienna @univie.ac.at 🇦🇹, studying the role of microbes 🦠 in environmental and human health, sulfur microbes & gut microbiome

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Reposted by Alex Loy
cmrqut.bsky.social @cmrqut.bsky.social · 20/08/2026
21 AUG — #ISME20 Day 5! 🦠 Today we're exploring antibiotic resistance, virus visualisation and a new reversible fixation method. Check out our presentations below! 🔬🌏
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Cluster of Excellence 'MicroPlanet' @microbesplanet.bsky.social · 17/08/2026
New CoE Microplanet paper in Nature Communications! CoE Key Researcher Alexander Loy @loyteam.bsky.social @cemess.bsky.social @univie.ac.at contributed to a study reconstructing the evolutionary history of the Sox sulfur oxidation system. doi.org/10.1038/s414... @fwf-at.bsky.social
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Cluster of Excellence 'MicroPlanet' @microbesplanet.bsky.social · 31/07/2026
It's Friday, it's podcast time! In the 5th episode, “Sulfur metabolism-A balancing act”, we speak with CoE Key Researcher Alexander Loy @loyteam.bsky.social @cemess.bsky.social @univie.ac.at on how microbial sulfur compounds and gut gases like hydrogen sulfide shape our gut health. Link 👇
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Cluster of Excellence 'MicroPlanet' @microbesplanet.bsky.social · 05/08/2026
New @fwf-at.bsky.social CoE Microplanet paper! Alex Loy and team @loyteam.bsky.social @cemess.bsky.social @univie.ac.at and colleagues discovered a new group of iron-binding molecules, kineochelins, produced by an Antarctic bacterium. 📄 doi.org/10.1111/1751...
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Cluster of Excellence 'MicroPlanet' @microbesplanet.bsky.social · 21/07/2026
Celebrating excellent Austrian microbiome research with the awardees of this year’s Austrian Microbiome Research Awards!🏆 Congrats to Jakob Rauter, Julia Krasenbrink @cemess.bsky.social @univie.ac.at, and Goodness Osondu-Chuka @bokuvienna.bsky.social Details 👇
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Alex Loy @loyteam.bsky.social · 24/07/2026
Congratatulations Julia! 🤩👊 Very proud of you 😊
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cemess_vienna @cemess.bsky.social · 23/04/2026
Joana Séneca, Petra Pjevac and David Berry from the Joint Microbiome Facility (JMF) and DOME | CeMESS contributed to a new study, led by scientists at Uniklinik RWTH Aachen, benchmarking a key method used to characterize the microbial contents of our digestive tracts. www.nature.com/articles/s41...
nature.com
Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysis - Nature Microbiology
A comparison of sequencing of complex mock communities performed at multiple depths and analysed using different methods establishes minimum standards that can ensure the accuracy of metagenomic analy...
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cemess_vienna @cemess.bsky.social · 28/04/2026
Can rainforests buffer rising CO₂ levels? 🌳🌍A new study by an international team, co-lead by Lucia Fuchslueger (@loutsi.bsky.social TER | CeMESS), reveals that the tradeoff comes at a cost. Learn more 🔗 cemess.univie.ac.at/news-detail/... @natcomms.nature.com #AmazonRainforest
cemess.univie.ac.at
Amazon understory forests show short-term boost in CO₂ uptake – but this comes at a cost
Experimental increases in CO2 stimulated plant growth are facilitated by re-distributed root systems to extract nutrient resources more efficiently
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cemess_vienna @cemess.bsky.social · 30/04/2026
New from DOME | CeMESS: Mondsee & Attersee show elevated methane in surface waters year round – evidence of the #MethaneParadox and a continuous source to the atmosphere, says study lead Barbarba Bayer (@barbarabayer.bsky.social) Learn more 🔗 cemess.univie.ac.at/news-detail/...
cemess.univie.ac.at
New Study: Methane is present in surface waters of Mondsee and Attersee – why is it there and why should we care?
A new study from the research group of Barbara Bayer at DOME | CeMESS discovered that the two Austrian lakes Mondsee and Attersee are a source of methane throughout the year. The study was recently pu...
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Reposted by Alex Loy
cemess_vienna @cemess.bsky.social · 07/05/2026
Now out in @nature.com by @polzlab.bsky.social Read more about the study here: 🔗 cemess.univie.ac.at/news-detail/...
cemess.univie.ac.at
Evolutionary processes shape bacterial populations in the human gut
In addition to diet and medication, transmission between people can also play an important role in the microbiome
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cemess_vienna @cemess.bsky.social · 07/05/2026
New in @isme-microbes.bsky.social: 🦠 Endochlamydia hydrae – the first cultured member of a chlamydial lineage, previously known only from metagenome-assembled genomes – thrives as a symbiont of freshwater cnidarian Hydra. 🔗 Read the paper: academic.oup.com/ismej/advanc...
academic.oup.com
Stable association of a chlamydial symbiont with the freshwater predator Hydra suggests broad host potential
Abstract. Symbiotic associations between microorganisms often involve eukaryotes partnering with microbes for nutrient exchange, protection, and resource a
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Alex Loy @loyteam.bsky.social · 24/07/2026
New preprint👇 Global evolutionary pattern and distinct metabolic strategies of sulfur-cycling microorganisms across ecosystems Also introducing DiSuCy - a curated, phylogeny-aware knowledgebase of dissimilatory sulfur metabolism genes #microsky #microbiomesky 🧫 🦠 doi.org/10.21203/rs....
doi.org
Global evolutionary pattern and distinct metabolic strategies of sulfur-cycling microorganisms across ecosystems
Microorganisms drive the global sulfur cycle, but the complexity of sulfur redox transformations complicates understanding of their evolution, metabolism, and ecology. We developed DiSuCy, a manually ...
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Alex Loy @loyteam.bsky.social · 24/07/2026
New Paper 👇 Evolutionary trajectory of microbial sulfur oxidation pathways recapitulates Earth’s oxygenation history #microsky 🧫🦠 #microbiomesky www.nature.com/articles/s41...
nature.com
Evolutionary trajectory of microbial sulfur oxidation pathways recapitulates Earth’s oxygenation history - Nature Communications
Microorganisms have long driven Earth’s oxidative sulfuric cycle using complex sulfur-oxidizing systems. This study shows that this molecular machinery first originated in the anoxic Archean eon and g...
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Cluster of Excellence 'MicroPlanet' @microbesplanet.bsky.social · 21/04/2026
New @fwf-at.bsky.social CoE Microplanet study in ISME Journal! CoE Key Researcher Alex Loy and team @loyteam.bsky.social @cemess.bsky.social @univie.ac.at find rumen bacteria that degrade a plant- and algal-derived sulfosugar, might help limit methane production. doi.org/10.1093/isme...
Annoucement of new publication in ISME Journal by researchers in the CoE Microplanet. Image shows cattle grazing in a meadow, logos of University of Vienna and funder FWF
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Hall Lab @halllab.bsky.social · 22/04/2026
New paper out in Nature Comms 🎉 Congrats to first author @sekid.bsky.social & thanks team & collaborators We show that B. bifidum & E. coli can cooperate in the breastfed infant gut through nutrient cross-feeding, helping shape early-life microbiome development 🦠👶 www.nature.com/articles/s41...
nature.com
Human milk oligosaccharide mediates mutualism between Escherichia coli and Bifidobacterium bifidum - Nature Communications
Escherichia coli is widespread in healthy breastfed infants, yet its ecological role is unclear. Here, the authors provide insights into the mechanisms supporting its persistence and co-existence with...
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cemess_vienna @cemess.bsky.social · 07/04/2026
New paper from @loyteam.bsky.social out in The @isme-microbes.bsky.social Journal: "Sulfoquinovose degradation by cow rumen microbiota" Want to know more? 🔗 cemess.univie.ac.at/news-detail/...
cemess.univie.ac.at
New paper: Degradation of a green-fodder-derived sulfosugar by cow rumen bacteria
Rumen microbiota are essential for cattle husbandry, providing energy and protein through fermentation. However, this symbiotic process also produces methane as a byproduct, representing both a loss of feed energy for the animal and a major source of greenhouse gas emissions. A new study now uncovers the identity and metabolism of rumen bacteria that degrade a ubiquitous plant- and algae-derived sulfosugar, revealing a previously unrecognized process that may help limit methane production.
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Alex Loy @loyteam.bsky.social · 29/03/2026
📢 New paper 🚨 ☘️🌿🌱🐄💨🦠🔬🧫🧬 #sulfoquinovose #microbiome #microsky #microbiomesky academic.oup.com/ismej/articl...
academic.oup.com
Sulfoquinovose degradation by cow rumen microbiota
Abstract. Sulfoquinovose, a sulfonated sugar derived from the thylakoid membrane lipid sulfoquinovosyl diacylglycerol, is abundant in photosynthetic organi
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cemess_vienna @cemess.bsky.social · 24/03/2026
Two weeks left to apply for our Master’s Programme “Microbiome Science” at @cemess.bsky.social | @univie.ac.at! Explore microbial communities shaping health, the environment, and ecosystems. Application Deadline: April 7 All Details: studieren.univie.ac.at/en/degree-pr...
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Nichole Broderick, PhD @nabroderick.bsky.social · 20/03/2026
Excited to announce our new journal from @isme-microbes.bsky.social ISME Host Microbe is live and now accepting submissions. Look forward to receiving your papers! #Microsky 🧫 🦠
Image of the cover of the 1st volume of ISME Host Microbe a new official journal of the International Society for Microbial Ecology. Cover images shows a plant stomata with bacteria around and entering.
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Joint Genome Institute @jgi.doe.gov · 04/03/2026
By characterizing the structure and function of a methylthio-alkane reductase system, researchers could open avenues for using bacteria to produce ethylene and more. 🖥️ 🧬 Full story: jgi.doe.gov/user-science/science-st…
jgi.doe.gov
An Enzyme System to Help Catalyze Bioproduction of Plastic | Joint Genome Institute
By characterizing the structure and function of a methylthio-alkane reductase system, researchers could open avenues for using bacteria to produce ethylene and more.
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Mike Jetten @msmjetten.bsky.social · 01/03/2026
Long in the making, great to see the study on line at @femsmicro.org A novel North Sea ammonia-oxidizing archaeon Nitrosarchaeum marinum leverages a high abundance of transport systems to grow over a wide salinity range. #microbiology @ribesresearch.bsky.social academic.oup.com/femsec/artic...
academic.oup.com
A novel North Sea ammonia-oxidizing archaeon Nitrosarchaeum marinum leverages a high abundance of transport systems to grow over a wide salinity range
Isolation and characterization of a novel North Sea ammonia oxidizing archaeon, Nitrosarchaeum marinum T12, reveals an adaptation to a broad salinity under
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Tami Lieberman @contaminatedsci.bsky.social · 28/02/2026
One of my favorite papers of past few years!
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Alex Loy @loyteam.bsky.social · 25/02/2026
Our new preprint introduces #kineochelins, a new group of #siderophores produced by the Antarctic soil actinomycete 🦠🔬🧫 #Actinokineospora sp. UV203 Kudos to the amazing Stanislava Králová & a fantastic team of collaborators 🤩 #microbiomesky www.biorxiv.org/content/10.6...
biorxiv.org
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Cameron Thrash @jcamthrash.bsky.social · 24/02/2026
Kineochelins - a novel group of siderophores from an Antarctic bacterium www.biorxiv.org/content/10.6... #jcampubs
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Cameron Thrash @jcamthrash.bsky.social · 22/01/2026
Our latest. Led by the very talented @ahoiching.bsky.social Cell cycle dysregulation of globally important SAR11 bacteria resulting from environmental perturbation www.nature.com/articles/s41... #jcampubs 🌊
nature.com
Cell cycle dysregulation of globally important SAR11 bacteria resulting from environmental perturbation - Nature Microbiology
Without key cell cycle control genes, SAR11 cells experience aneuploidy and growth inhibition when exposed to changes in nutrients, carbon sources or temperature stress, a vulnerability that may repre...
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Segata Lab @cibiocm.bsky.social · 21/01/2026
🥁 NEW Our study on infant gut microbiome and #straintransmission is now published in @nature.com: doi.org/10.1038/s415... 1/10
doi.org
Baby-to-baby strain transmission shapes the developing gut microbiome - Nature
A metagenomic survey of babies attending the first year of nursery detected extensive baby-to-baby microbial strain transmission, pointing to social interactions in infancy as crucial drivers of infan...
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Professor Lesley Hoyles @bugsinyourguts.bsky.social · 22/01/2026
PhD studentships available through our BBSRC-funded doctoral programme. 🦠🧫💻 Contact me if you're interested in using bioinformatics/lab-based approaches with cultivated and uncultivated bacteria of the human microbiome, to identify and characterize novel enzymes with potential biotech applications.
nottingham.ac.uk
Biotechnology and Biological Sciences Doctoral Training Programme - The University of Nottingham
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Roland Hatzenpichler @environmicrobio.bsky.social · 06/01/2026
New paper out in Current Opinion in Microbiology: MCR-encoding (potentially methanogenic) Thermoproteota are widespread and transcriptionally active in diverse anoxic ecosystems! @dr-zj.bsky.social, Matthew Kellom & @emileyeloe-fadrosh.bsky.social. Funded by DOE BER program. tinyurl.com/2fsyxswj 🦠🧪
Phylogeny and ecology of MCR-encoding archaea
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Alex Loy @loyteam.bsky.social · 16/01/2026
Call is open!
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Alex Loy @loyteam.bsky.social · 16/12/2025
...and would be happy if you apply with an exciting project in #microbiome research #microbial ecology that intersects with our research (e.g. ecology and evolution of microbial #sulfur metabolism, ecophysiology of environmental and host-associated microbiomes). careers.univie.ac.at/en/postdoc/e...
careers.univie.ac.at
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Alex Loy @loyteam.bsky.social · 16/12/2025
📢 20 postdoctoral positions (full-time, 4 years) for outstanding female scientists 👩‍🔬 🔬 @univie.ac.at The E-STEEM programme call opens January 7th, 2026 and closes March 3rd, 2026. careers.univie.ac.at/en/postdoc/e... I participate as a host...
careers.univie.ac.at
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Ken Timmis @kentimmis.bsky.social · 16/12/2025
Happy to post our latest paper: doi.org/10.1111/1751... Biases accumulate with age, so it is essential to begin teaching critical thinking as early as possible. The problems are HOW, given the complexity of its theory, and IN WHAT EDUCATIONAL CONTEXT? The solutions we propose in this paper are...
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Alex Loy @loyteam.bsky.social · 16/12/2025
📢 20 postdoctoral positions (full-time, 4 years) for outstanding female scientists 👩‍🔬 🔬 @univie.ac.at The E-STEEM programme call opens January 7th, 2026 and closes March 3rd, 2026. careers.univie.ac.at/en/postdoc/e... I participate as a host...
careers.univie.ac.at
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Vedrana Šlipogor @vedranaslipogor.bsky.social · 24/11/2025
📢 Our new article, co-first authored by Dr. Huimin Ye and myself, entitled “Associations between gut microbiota and personality traits: insights from a captive common marmoset (Callithrix jacchus) colony” has just come out in Microbiology Spectrum. 🥳 journals.asm.org/doi/full/10.... A thread.
journals.asm.org
Associations between gut microbiota and personality traits: insights from a captive common marmoset (Callithrix jacchus) colony | Microbiology Spectrum
This study provides valuable insights into the intricate relationship between gut microbiota and host personality traits, using captive common marmosets as a model. By controlling for diet and housing conditions, it probes key host factors such as personality, age, sex, and social group membership, offering a robust framework for understanding microbiome-host interactions. The discovery of specific microbial taxa associated with personality traits, particularly the enrichment of sulfite-reducing genera in more avoidant individuals, underscores the potential of the gut microbiome to reflect or be associated with personality differences. These findings advance our understanding of microbiome-host dynamics and pave the way for future research on the mechanistic links between behavior and gut microbiota in other animal models and across broader ecological contexts.
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BejaLabTechnion @bejalab.bsky.social · 02/11/2025
Powerful new antibiotic that can kill superbugs discovered in soil bacteria www.nature.com/articles/d41...
nature.com
Powerful new antibiotic that can kill superbugs discovered in soil bacteria
Surprise discovery could pave the way for new treatments against drug-resistant infections.
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Bella Rauch @rauchlab.bsky.social · 22/10/2025
Check out our new publication, a collaboration with Giovanni Luchetti and Vishva Dixit @ Genentech. We show that the E.coli effector NleL inhibits intestinal epithelial cell extrusion after #inflammasome activation via degrading the kinases ROCK1 and 2!! www.nature.com/articles/s41... Explainer 1/8
nature.com
Enteropathogenic bacteria evade ROCK-driven epithelial cell extrusion - Nature
The bacterial ubiquitin ligase NleL evades host defence mechanisms both by inhibiting pyroptosis and by preventing infected intestinal epithelial cells from being extruded into the lumen and expelled ...
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Nature Microbiology @natmicrobiol.nature.com · 21/10/2025
OUT NOW Activity-targeted metaproteomics uncovers rare syntrophic bacteria central to anaerobic community metabolism by @ryanziels.bsky.social www.nature.com/articles/s41...
nature.com
Activity-targeted metaproteomics uncovers rare syntrophic bacteria central to anaerobic community metabolism - Nature Microbiology
An approach combining BONCAT, stable isotope probing and metaproteomics showcases the hidden metabolic interconnectivity of microorganisms within an anaerobic digestion community.
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ace-gtdb.bsky.social @ace-gtdb.bsky.social · 22/10/2025
Our @narjournal.bsky.social manuscript is out! It explores the growth of the GTDB (gtdb.ecogenomic.org) since its inception, as well as updates to the website, methodology, policies, and major taxonomic and nomenclatural changes over the past three years. academic.oup.com/nar/advance-...
academic.oup.com
GTDB release 10: a complete and systematic taxonomy for 715 230 bacterial and 17 245 archaeal genomes
Abstract. The Genome Taxonomy Database (GTDB; https://gtdb.ecogenomic.org) provides a phylogenetically consistent and rank normalized genome-based taxonomy
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cemess_vienna @cemess.bsky.social · 16/10/2025
A teaspoon of seafloor mud contains about a billion bacteria! In IQ – Wissenschaft und Forschung-podcast of #Bayern2, Alexander Loy (@loyteam.bsky.social) talks about the hidden microbial world. Listen here:🔗 www.ardaudiothek.de/episode/urn:...
ardaudiothek.de
Podcast: Der Meeresboden - Mikroorganismen am Grund des Ozeans
Ein Teelöffel voll Schlamm vom Meeresgrund enthält rund eine Milliarde Bakterien, Tausende verschiedener Arten. Kaum bekannt, aber faszinierend und wichtig für den Kohlenstoffkreislauf der Erde. Ein ...
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BejaLabTechnion @bejalab.bsky.social · 16/10/2025
The bacterial schizorhodopsins: novel light-driven inward proton pumps from Antarctic Minisyncoccota (Patescibacteria) and cyanobacteria, with implications for the proton-pumping mechanism www.biorxiv.org/content/10.1...
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James Bradley @drbradbrad.bsky.social · 10/09/2025
2 Postdoc vacancies: Microbial dormancy in the cryosphere @erc.europa.eu #ERC_SIESTA 📢 PLEASE RT Experimental: 🧬 Single cell microbial activity measurements, flow cytometry, omics, biogeochem Modelling: 🖥️ Bioenergetics, thermodynamics, ecological, biogeochem ☀️ Marseille, France ‼️ Apply by 30 Sept
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ISME - International Society for Microbial Ecology @isme-microbes.bsky.social · 25/09/2025
Ten microbiology organizations have come together to develop a global strategy to integrate microbial science into climate solutions. ISME is proud to stand alongside these partners in shaping this roadmap. Read more: isme-microbes.org/microbes-wit... #MicrobialEcology #ClimateAction
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Universität Wien / University of Vienna @univie.ac.at · 25/09/2025
The University of Vienna celebrates its Tenure Track professors. 🌍 With a new international symposium #univie highlights the importance of #TenureTrack as a catalyst for change and a vital path for research excellence. 🤝 More about it here: ⤵️ www.univie.ac.at/en/news/deta...
univie.ac.at
University of Vienna reaffirms commitment to the tenure-track career path with new symposium
Interdisciplinary tenure-track symposium
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Andreas Bäumler @abaumler.bsky.social · 13/09/2025
Hydrogen sulfide production distinguishes Salmonella from close relatives, but its biological significance remains obscure. This study uncovers the secret: Salmonella uses hydrogen sulfide production as a weapon to outcompete E. coli and gain a foothold in the gut. www.pnas.org/doi/10.1073/...
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Universität Wien / University of Vienna @univie.ac.at · 12/09/2025
Von Wien nach Kanada: #Permafrost und heiße Quellen ❄️♨️ Warum macht man eigentlich #Feldforschung in #Kanada? 🔍 Was treibt uns Forscher*innen dazu, mit Bären- und Mosquitospray bewaffnet, bei jedem Wetter in Wäldern oder #Mooren zu graben? 👨‍🔬👩‍🔬 Erfahre mehr darüber in der #Rudolphina: ⤵️
rudolphina.univie.ac.at
Klimaforschung in Kanada
Warum macht man eigentlich Feldforschung in Kanada? Was treibt uns Forscher*innen dazu, mit Bären- und Mosquitospray bewaffnet, bei jedem Wetter in Wäldern oder Mooren zu graben? Warum nehmen wir schm...
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Alex Loy @loyteam.bsky.social · 11/09/2025
Nice summary from Songcan & Marc 🙏 on our discovery of a new microbial energy metabolism 🦠 🧫 ⚡ 🔌 Microbial Iron oxide respiration coupled to Sulfide Oxidation (MISO) @nature.com Research Briefing 😍 doi.org/10.1038/d415... 📰 Original paper www.nature.com/articles/s41... #microsky #microbiomesky
doi.org
Iron-respiring microbes could have a role in sulfur cycling
A species of bacteria grows when both ferrihydrite and sulfide are present, but not when either is absent.
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cemess_vienna @cemess.bsky.social · 10/09/2025
Deadline approaching on Sept 17! We are hiring a Full Professor of Environmental Biogeochemistry of Metals at #CeMESS at the University of Vienna. Learn more: 🔗 edge.univie.ac.at/news-talks/n... @edge-vienna.bsky.social @univie.ac.at #EnvironmentalBiochemistry
edge.univie.ac.at
We are hiring: Full Professor of Environmental Biogeochemistry of Metals
Human activities are driving rapid environmental change on a global scale, with pollutants playing a critical role in pushing planetary systems beyond safe limits. These changes have profound conseque...
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cemess_vienna @cemess.bsky.social · 10/09/2025
One week to go! Apply by Sept 17 for the Full Professor position in Soil Ecosystems and Global Change at #CeMESS at the University of Vienna. More info: 🔗 ter.univie.ac.at/news-talks/n... @univie.ac.at #SoilEcosystems #WeAreHiring
ter.univie.ac.at
We are hiring: Full Professor of Soil Ecosystems and Global Change
Soil ecosystems form the foundation of planetary health and play a critical role in climate feedback mechanisms. However, they are also vulnerable to the impacts of global change.
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Alex Loy @loyteam.bsky.social · 27/08/2025
We now show that this redox reaction also powers 🔋🔌 a new chemolithoautotrophic lifestyle of anaerobic microbes 🦠🧫
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