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Kaitlin Creamer

@kaitlincreamer.bsky.social
169 followers 308 following 16 posts

🧬 Postdoc in the Banfield Lab @ UC Berkeley studying soil microbial ecology & carbon sequestration 🌿 Former marine microbe explorer, PhD @ Scripps UC San Diego 🌊 she/her ~soil & ocean microbes are cool~

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Reposted by Kaitlin Creamer
The Banfield Lab @banfieldlab.bsky.social · 15/06/2026
🌲🔥🧬 New pre-print from Elliot Weiss in the Banfield Lab! We tested whether inoculating burned forest soils with native microbes could aid recovery. A single inoculation accelerated the return of symbiotic fungi and nitrogen cycling! www.biorxiv.org/content/10.6...
biorxiv.org
Microbial inoculation accelerates post-fire soil recovery in a mixed conifer forest
High-severity wildfires of increasing size and frequency result in release of carbon dioxide and loss of timber resources, reduction in biodiversity, loss of soil, diminished water quality, and reduce...
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Reposted by Kaitlin Creamer
The Banfield Lab @banfieldlab.bsky.social · 06/06/2026
Big congrats to Susan Mullen and coauthors on this new preprint. 🎉 We're excited to share this work exploring microbial dispersal and establishment across river water, groundwater, soil, and hyporheic zone environments in the East River watershed. Read the preprint: www.biorxiv.org/content/10.6...
biorxiv.org
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The Banfield Lab @banfieldlab.bsky.social · 26/05/2026
Big congrats to @ameliarnelson.bsky.social and coauthors on this new preprint. 🎉 We're excited to share this work on microbial CO2 fixation across diverse soil ecosystems, highlighting widespread carbon fixation potential and expanded RuBisCO diversity. Check it out: www.biorxiv.org/content/10.6...
biorxiv.org
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Ling-Dong Shi @lingdong-shi.bsky.social · 24/05/2026
Super excited to share the final project of my postdoc career! We found that Borgs and mini-Borgs are widespread across diverse ecosystems. They don't just exist in Banfield Lab — they are everywhere! 🌎
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The Banfield Lab @banfieldlab.bsky.social · 24/05/2026
🧬 New preprint out from @lingdong-shi.bsky.social et al. on the origin and evolution of archaeal Borg extrachromosomal elements across different environments. Congratulations Ling-Dong and co-authors! 📄 doi.org/10.64898/202...
doi.org
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Amelia Nelson Kuhn @ameliarnelson.bsky.social · 23/05/2026
Excited to share a preprint from my postdoc research at @ucberkeleyofficial.bsky.social in the @banfieldlab.bsky.social! We surveyed soil microbiomes for autotrophy - and found it nearly everywhere, but most abundant in deep, saturated soils. Check it out below! www.biorxiv.org/content/10.6...
biorxiv.org
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The Banfield Lab @banfieldlab.bsky.social · 30/03/2026
Congratulations @wshuai.bsky.social and co-authors! We’re excited to introduce MODIFI, our new scalable method for detecting DNA modifications in PacBio metagenomic data and estimating ECE-host linkage. Check out the preprint: www.biorxiv.org/content/10.6...
biorxiv.org
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Shuai Wang @wshuai.bsky.social · 30/03/2026
Studying DNA modification in microbes shouldn't be limited by methodology. 🧬 We’re excited to introduce MODIFI, our new scalable method for detecting DNA modifications in PacBio metagenomic data and estimating ECE-host linkage. Check out the preprint: www.biorxiv.org/content/10.6...
biorxiv.org
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Pete Chuckran @pchuckran.bsky.social · 03/03/2026
Our recent publication where the central question was: in soils, are there trademark characteristics of rapidly transcribed genes? And it was a resounding “it depends”. We found gene function, environmental stimulus, and phylogeny all impacted this relationship. More here: peerj.com/articles/206...
peerj.com
The relationship between gene traits and transcription in soil microbial communities varies by environmental stimulus
Codon and nucleotide frequencies are known to relate to the rate of gene transcription, yet how these traits shape transcriptional profiles of soil microbial communities remains unclear. Here we test ...
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Reposted by Kaitlin Creamer
Innovative Genomics Institute @innovativegenomics.bsky.social · 26/01/2026
Today in Nature Communications, a team of IGI researchers from The Banfield Lab and Pam Ronald's labs uncover a new way to reduce methane emissions from rice by influencing the activity of rice paddy soil #microbes. Read more: ow.ly/45j150Y3WsI
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The Banfield Lab @banfieldlab.bsky.social · 23/01/2026
🚨 New pre-print alert! Jumbo circular extrachromosomal elements of methane-oxidizing archaea with variably extensive metabolic and defense gene repertoires www.biorxiv.org/content/10.6...
biorxiv.org
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Ling-Dong Shi @lingdong-shi.bsky.social · 23/01/2026
Excited to share our discovery of archaeal circular, jumbo extrachromosomal elements (up to ~535 kb genomes). One related, 409-kb genome is integrated in CH4-eating Methanoperedens, representing the largest integrative element in Archaea so far! Curious about what they are doing? See the paper
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Innovative Genomics Institute @innovativegenomics.bsky.social · 21/01/2026
A new preprint from The Banfield Lab looks at mobile genetic elements with single-cell precision. Read here: ow.ly/hFBX50Y0nQA #microbiology
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Bethany Kolody, PhD @bethanykolody.bsky.social · 14/01/2026
Huge thanks to The Scientist for this feature that really captured the spirit of our research! www.the-scientist.com/how-ocean-cu...
the-scientist.com
How Ocean Currents Shape the Marine Microbiome
Ocean microbes keep the planet healthy by cycling nutrients and capturing carbon, but a detailed and precise map of where they live had never been made—until now.
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The Banfield Lab @banfieldlab.bsky.social · 07/01/2026
New preprint out: Revealing the pervasive landscape of MGE-host interactions in situ with single-cell genomics www.biorxiv.org/content/10.6... @mingyan-igi.bsky.social
biorxiv.org
Revealing the pervasive landscape of MGE-host interactions in situ with single-cell genomics
Mobile genetic elements (MGEs), including plasmids and viruses, drive microbial evolution and ecosystem dynamics, yet their distribution, host range, and functions remain poorly understood, especially...
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Reposted by Kaitlin Creamer
Diamond Lab @diamondlab.bsky.social · 05/01/2026
🚨 Our Lab is HIRING! If you are interested in characterizing model microbiomes using genome-resolved methods, statistical/metabolic modeling, and/or machine learning please submit an application here: aprecruit.berkeley.edu/JPF05234 #postdoc #sciencejobs #biology #microbiome
aprecruit.berkeley.edu
Postdoc - Microbiome - Innovative Genomics Institute
University of California, Berkeley is hiring. Apply now!
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Reposted by Kaitlin Creamer
Nature Biotechnology @natbiotech.nature.com · 02/01/2026
Troubleshooting common errors in assemblies of long-read metagenomes - @merenbey.bsky.social @banfieldlab.bsky.social go.nature.com/44P7nSm
go.nature.com
Troubleshooting common errors in assemblies of long-read metagenomes - Nature Biotechnology
Long-read sequence assemblies from metagenomes contain frequent errors.
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Marjan Ghotbi @marjanghotbi.bsky.social · 31/12/2025
Think you need large volumes for microbial experiments? Our recent publication introduces HiMEx, a simple, scalable method for microbial ecology. academic.oup.com/ismecommun/a... 🦠 it provides an easy, efficient approach to capturing viral diversity, opening new opportunities for virome analysis.
academic.oup.com
From microscale to microbial insights: validating high-throughput microvolume extraction (HiMEx) methods for marine microbial ecology
Abstract. Extracting and directly amplifying DNA from small-volume, low-biomass samples would enable rapid, ultra-high-throughput analyses, facilitating th
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Innovative Genomics Institute @innovativegenomics.bsky.social · 17/12/2025
Out now in Nature Communications, from IGI's Jill Banfield (The Banfield Lab) and collaborators: Convergent evolution of viral-like Borg archaeal extrachromosomal elements and giant eukaryotic viruses Read here: www.nature.com/articles/s41467-025-…
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Kaitlin Creamer @kaitlincreamer.bsky.social · 12/12/2025
Our new paper on Salinispora is out in @asm.org #AppEnvMicro! @scrippsocean.bsky.social Ever wonder if an actinomycete living in 1m² ocean sediment is just one big clonal colony? We sequenced 99 Salinispora strains from a single Fiji reef plot to find out. 🧵1/8 doi.org/10.1128/aem....
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Cameron Thrash @jcamthrash.bsky.social · 09/12/2025
Taxonomic and biosynthetic diversity of the marine actinomycete Salinispora across spatial scales journals.asm.org/doi/full/10.... #jcampubs
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Innovative Genomics Institute @innovativegenomics.bsky.social · 08/12/2025
Out today in Science Magazine — First author Veronika Kivenson and PIs Jill Banfield (The Banfield Lab) and Alanna Schepartz team up to reveal a new genetic code in #archaea, with implications for #methane and #climate, and #bioengineering! Learn more: ow.ly/Kuem50Xurh0
illustration of petri dishes growing microbes
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The Banfield Lab @banfieldlab.bsky.social · 28/11/2025
Out now in Nature Communications: Convergent evolution of viral-like Borg archaeal extrachromosomal elements and giant eukaryotic viruses www.nature.com/articles/s41... @luisvalentin.bsky.social @lingdong-shi.bsky.social @martianmicrobe.bsky.social @mschoelmerich.bsky.social
nature.com
Convergent evolution of viral-like Borg archaeal extrachromosomal elements and giant eukaryotic viruses - Nature Communications
Borgs are large extrachromosomal elements of anaerobic methane-oxidizing archaea. Here, via in silico protein structure prediction of ~10,000 Borg proteins, the authors reveal that Borgs share numerou...
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Reposted by Kaitlin Creamer
Veronika Kivenson @kivenson.bsky.social · 23/11/2025
New paper out: An archaeal genetic code with all TAG codons as pyrrolysine: www.science.org/doi/10.1126/...
science.org
An archaeal genetic code with all TAG codons as pyrrolysine
Multiple genetic codes developed during the evolution of eukaryotes and bacteria, yet no alternative genetic code is known for archaea. We used proteomics to confirm our prediction that certain archae...
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Reposted by Kaitlin Creamer
Innovative Genomics Institute @innovativegenomics.bsky.social · 20/11/2025
Out today in Science Magazine — First author Veronika Kivenson and PIs Jill Banfield (The Banfield Lab) and Alanna Schepartz team up to reveal a new genetic code in #archaea, with implications for #methane and #climate, and #bioengineering! Learn more: ow.ly/Kuem50Xurh0
Headshots of Veronika, Jill, and Alanna
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Allison G @assemblerag.bsky.social · 01/10/2025
Most plasmids described in E. coli are small compared to the megaplasmids we identified here! Check out the preprint if you want to learn about these mysterious large elements and their potential functions 🧬. I’m very grateful to have had the opportunity to work on this in @banfieldlab.bsky.social
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 01/10/2025
Megaplasmids associate with Escherichia coli and other Enterobacteriaceae www.biorxiv.org/content/10.1101/202…
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Balunas Research Group @balunaslab.bsky.social · 15/09/2025
Congrats to Dulce Guillén Matus for her newest manuscript out today! A collaborative manuscript on the microbes, metals, and metabolites of Botryllus schlosseri, a marine tunicate! doi.org/10.1128/msys...
doi.org
Multi-omics analysis reveals important role for microbial-derived metabolites from Botryllus schlosseri in metal interactions | mSystems
Given the importance of marine invertebrates and their microbial communities in marine ecosystems, we sought to characterize the largely unknown microbial associates, metal sequestration, and metabolite production of the marine colonial tunicate, Botryllus schlosseri, a model organism for cellular and developmental studies. Using an integrated multidisciplinary approach, we identified significant correlations between metals, metabolites, and bacterial taxa. B. schlosseri tissue was highly enriched in metals compared to seawater, and B. schlosseri microbiome beta-diversity was significantly different from seawater. We also introduced the concept of the pan-metabolome to classify metabolites based on their presence or absence across complex samples and found microbial metabolites in both the core and flexible metabolome. These findings offer insights into B. schlosseri’s biological and chemical interactions with microorganisms and their environment, bridging the knowledge gap of host-microbiome-environment interactions and establishing a foundation for continuing research on the ecological effects of trace metals in these biological systems.
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Kaitlin Creamer @kaitlincreamer.bsky.social · 22/09/2025
strongest earthquake I’ve felt ever living in California, jolted me out of sleep with plenty of shaking felt on the 4th floor in Emeryville..! 4.6, epicenter in Berkeley?
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Scripps Institution of Oceanography @scrippsocean.bsky.social · 09/09/2025
🌊 Remember the barrels found off the coast of LA? New research from Scripps Oceanography found that 'halos' around some of the barrels came from caustic alkaline waste leaking from the barrels. scripps.ucsd.edu/news/decades-old-b…
scripps.ucsd.edu
Decades-Old Barrels of Industrial Waste Still Impacting Ocean Floor Off LA
In 2020, haunting images of corroded metal barrels in the deep ocean off Los Angeles leapt into the public consciousness. Initially linked to the toxic pesticide DDT, some barrels were encircled by gh...
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Scripps Institution of Oceanography @scrippsocean.bsky.social · 15/07/2025
🌊 ↪️↩️ Deep ocean currents play a pivotal role in shaping the diversity and function of microbial life across the South Pacific Ocean, according to a groundbreaking study led by @jcvi.org and Scripps Oceanography scientists. More on the study published by @science.org. ⬇️
scripps.ucsd.edu
Study Reveals how Deep Ocean Currents Shape Microbial Life across South Pacific
A groundbreaking study in the journal Science, has unveiled how deep ocean currents—known as global overturning circulation—play a pivotal role in shaping the diversity and function of microbial life ...
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Kaitlin Creamer @kaitlincreamer.bsky.social · 12/07/2025
Congrats @andrejakust.bsky.social and team!!! Capturing the complex microbiome of Cyanobacteria, allowing for ecologically-relevant studies in the lab! 🦠🔬
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J. Craig Venter Institute @jcvi.org · 10/07/2025
Just published in @science.org: Deep ocean currents don’t just move water—they shape entire microbial ecosystems. Our new study reveals how overturning circulation structures microbial life across the South Pacific. www.jcvi.org/media-center... 🧪
jcvi.org
New study reveals how deep ocean currents shape microbial life across the South Pacific
La Jolla, California—July 10, 2025—A groundbreaking study, published in the journal Science, has unveiled how deep ocean...
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Kaitlin Creamer @kaitlincreamer.bsky.social · 10/07/2025
Out today in Science!!! Congrats @bethanykolody.bsky.social and team, decoding the ocean “phylocline”!! 🧬🌊
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Innovative Genomics Institute @innovativegenomics.bsky.social · 08/03/2025
Thanks to out @ucberkeleyofficial.bsky.social community for joining us at Stand Up For Science! @jenniferdoudna.bsky.social spoke about how NIH funding supported her PhD & NSF funding supported her development of #CRISPR genome editing. Federal funding is needed for life-saving science!
Jennifer Doudna speaking at Stand Up for Science in Berkeleycrowd at Stand Up for Science in Berkeleycrowd at Stand Up for Science in Berkeleycrowd at Stand Up for Science in Berkeley
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Innovative Genomics Institute @innovativegenomics.bsky.social · 06/03/2025
Join us tomorrow (Friday) at UC Berkeley's #StandupForScience from 12-1pm in upper Sproul. Defend science from federal funding cuts & politicization, and keep science as a tool for social & economic progress! #SUFSatCal #ScienceForAll #InclusiveSTEM Learn more: www.standup4scienceberkeley.com
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Alaina Wood @thegarbagequeen.bsky.social · 06/03/2025
Will you be standing up for science tomorrow? If there isn’t an official rally near you, join the nationwide campus and workplace walkout at 12:00 PM local time on March 7th. Learn more here: standupforscience2025.org/local-event-... @standupforscience.bsky.social
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Rosemary Mosco @rosemarymosco.com · 10/02/2025
Nature valentines. Thanks to my Patrons for keeping me drawing www.patreon.com/birdandmoon
A group of six nature valentines. A picture of a bog with pitcher plants, with text saying "Our love is like a bog. Built up over time, resistant to decay, deeply interesting to just a small number of people." A yellow slime mold stretching out and exploring. "our love is like a slime mold. Collaborative, complex, at times unnerving to behold." A piece of limestone with a small trilobite in the corner. "Our love is like limestone. Layered, useful for many purposes, shaped by the friends we met along the way." A ring-billed gull with a french fry on a beach. "Our love is like a ring-billed gull. Abundant, found in North America, sometimes sustained by french fries." An Atlantic horseshoe crab walking on the sand. "Our love is like a horseshoe crab. Tough, timeless, unrelated to true crabs." A drawing of the phosphorus cycle, with arrows connecting various parts of a scene, including algae and fish and a farm and a river and a forest. "Our love is like the phosphorus cycle. Important, really hard to draw."
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Dr. Kat Napaaqtuk❄️ @napaaqtuk.bsky.social · 12/02/2025
From reddit: a letter from a postdoc who survived the Bolsonaro years. This is helpful framing for how to science in this administration. 🧪 www.reddit.com/r/labrats/s/...
reddit.com
From the labrats community on Reddit
Explore this post and more from the labrats community
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Kaitlin Creamer @kaitlincreamer.bsky.social · 16/01/2025
This is such incredible work! I’ve been obsessed with this project and its implications ever since @bethanykolody.bsky.social shared her dream of it when we first met at @scrippsocean.bsky.social. What a journey, with amazing discoveries and definitely more to uncover!! Congrats Bethany & team! 🎉
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Cameron Thrash @jcamthrash.bsky.social · 14/01/2025
Overturning circulation structures the microbial functional landscape of the South Pacific www.biorxiv.org/content/10.1... #jcampubs 🌊
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