iiinova — where your digital self keeps evolving

4/ Beyond resistance genes: we're testing whether genomic LLMs + few-shot learning can predict any genome-linked trait — using meropenem resistance in E. coli as a benchmark case 🧬📊 An alternative to bacterial GWAS? in collab with @guigau.bsky.social Meet @meriemyssf.bsky.social at poster 91

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3/ Magnets + microbes + single-cell sequencing = a new way to explore the Microbial Dark Matter 🌌🧲 Here's how we unlocked Patescibacteriota genomes through their symbiotic ties in collaboration with #BIAM #CEA Meet Lucile at poster 20 👋

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2/ pan2met: because one genome rarely tells the whole metabolic story. This new tool predicts species-wide metabolic pathways from pangenomes — with plans to power a metabolic atlas for all of PanGBank 🌍🧬 #pangenomics Meet Samuel Ortion at poster 42 👋

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1/ Kicking off with our MicroScope platform 🔬 a powerful tool for microbial genome analysis, annotation & comparative genomics. @ifb-elixir-fr.bsky.social @genopole.bsky.social Meet Noelle at poster 37 👋

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James McInerney @jomcinerney.bsky.social · 04/03/2026

Big year for LABGeM 🎉 Our lab members are presenting 7 posters this year at @jobim2026.bsky.social — proud to showcase the breadth of research happening in our group! @genoscopeumr.bsky.social @cea.fr

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Reposted by LABGeM

This looks absolutely great. For those of us interested in pangenomes, I am sure this will be a super place to get data and the interface is very clean (plotly). Congrats to the authors (I don't know if they are on bsky): pangbank.genoscope.cns.fr

pangbank.genoscope.cns.fr

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Reposted by LABGeM

guilhemroyer.bsky.social @guilhemroyer.bsky.social · 28/02/2026

Nearly ten years after starting my PhD, excited to share our study on the metabolic diversity of extraintestinal pathogenic E. coli. An exciting journey with @vallenet.bsky.social sky.social (@genolabgem.bsky.social) and Erick Denamur (@iame-umr1137.bsky.social). journals.asm.org/doi/10.1128/... 1/3

sky.social

SKY

We provide worldclass products and services for marketers, influencers, creatives, artists, fans, professionals, businesses, everybody on this planet and beyond.

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LABGeM @genolabgem.bsky.social · 12/01/2026

📢 Hiring: Bioinformatics Engineer position funded by the ANR PanGAIMiX, for the development of new methods in the PPanGGOLiN software suite. 💻 Build cool tools for #pangenomics 🔬 computer science × biology 📍 Evry, France | ⏳ Fixed-term contract 👉 Interested? Contact us 🔗 bit.ly/3NfSP8o

bit.ly

Engineer for the development of new methods in pangenomics - LABGeM

Prokaryotes —bacteria and archaea— are diverse, ubiquitous organisms with vast impacts on health, soil, and ocean ecosystems. Large-scale genome sequencing and pangenomics have revealed their molecula...

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GitHub - labgem/PANORAMA_article: A jupyter-book corresponding to PANORAMA publication.

💡 Example use case on defense systems We showcase PANORAMA for predicting defense systems in 941 Pseudomonas aeruginosa genomes and >6,000 genomes from four Enterobacteriaceae species. A fully reproducible Google Colab notebook is available on GitHub: github.com/labgem/PANOR...

github.com

A jupyter-book corresponding to PANORAMA publication. - labgem/PANORAMA_article

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📊 Key features • Functional annotation of defense systems at the pangenome level • Designed for comparative pangenomics • Reproducible & easy to install

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🧬 What does PANORAMA do? Based on the PPanGGOLiN pangenome graphs, PANORAMA integrates advanced methods for rule-based prediction of macromolecular systems and comparative analysis of conserved features between different pangenomes.

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Panorama: a robust pangenome-based method for predicting and comparing biological systems across species

🚀 New preprint out! We are happy to introduce PANORAMA, a new bioinformatics tool for comparative pangenomics, designed to predict and compare biological systems across prokaryotic pangenomes. It has been developed by @jpjarnoux.bsky.social 📄 Preprint: doi.org/10.64898/202...

doi.org

Over the last decade, the expansion in the number of available genomes has profoundly transformed the study of genetic diversity, evolution, and ecological adaptation in prokaryotes. However, traditio...

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LABGeM @genolabgem.bsky.social · 04/12/2025

PanGBank hosts pangenome graphs for more than 4,300 GTDB species reconstruted from GenBank/RefSeq genomes. 🦠🧬 A major step toward making large-scale pangenomics accessible to all. @ifb-elixir-fr.bsky.social @genoscopeumr.bsky.social @genopole.bsky.social

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Our PhD student Clémence Lauden is presenting her poster on Metapangenomic analysis within the Thermococcales at #Pangenome25 conference in Valencia🧬🌐 If you’re attending , don’t miss the chance to stop by, ask questions, and chat about the project. See you there! 👋🎓 #pangenome #archaea

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@tlemane.bsky.social presented PanGBank at #Pangenome25 conference in Valencia 🧬🌐 We’re thrilled to share this resource with the community and to see the growing interest in #pangenomics

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We’ve just released a set of Google Colab tutorials to help you get started with PanGBank. 🧬💻 github.com/labgem/PanGB... Whether you're new to the resource or looking to dig deeper, these step-by-step notebooks make it easy to jump in. 🔗 Try them out and tell us what you think! #pangenomics

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It has been developed @j-main-guy.bsky.social and @tlemane.bsky.social The resource is also accessible through API and CLI, making it easy to integrate into your pipelines and workflows. 🚀🧬

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pangbank.genoscope.cns.fr

We’re excited to announce the launch of the beta version of PanGBank website! 🧬🌐 pangbank.genoscope.cns.fr PanGBank is a web-based platform for exploring, analyzing, and downloading pangenomes created with #PPanGGOLiN. 🔗 Dive in, test it out, and let us know what you think! #pangenome

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LABGeM @genolabgem.bsky.social · 02/10/2025

@genolabgem.bsky.social was there with @j-main-guy.bsky.social and @tlemane.bsky.social presenting the PanGBank database and new developments in metapangenomics #pangenome #PPanGGOLiN

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🚀 We’re looking for a Master’s student to join the PanGAIMiX project to develop workflows for pangenome graph functional annotation at large scale 💻 Build cool tools for big genomic data 🔬 computer science × biology 📍 Evry | 📅 january 2026 | ⏳ 6 months 👉 Interested? Contact us bit.ly/4mMLLfp

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LABGeM @genolabgem.bsky.social · 05/09/2025

A new opportunity to join the team !

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We're on the lookout for a talented Software Development Engineer to join our team permanently at CEA and work on the MicroScope platform! 🚀💻 If you're passionate about software development and ready for a new challenge, we'd love to hear from you. @genoscopeumr.bsky.social‬ @cea.fr ‪

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Thrilled to announce the successful defense of the Habilitation à Diriger des Recherches (HDR) by Violette Da Cunha! 🎉📚 Congratulations on this well-deserved achievement! #AcademicLife #Archaea @genoscopeumr.bsky.social‬ @univparissaclay.bsky.social @univevry.bsky.social

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Congratulations to @jpjarnoux.bsky.social who just achieved a major milestone by successfully defending his thesis! 🎓✨ Welcome to the world of doctors! #AcademicLife #ProudPI #pangenomics @genoscopeumr.bsky.social‬ @univparissaclay.bsky.social @cea.fr @univevry.bsky.social

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