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Reposted by Jérôme Arnoux

IceLab @icelabumu.bsky.social · 23/09/2026

Transcriptomics, proteomics, computational modelling and experiments. The work includes researchers across IceLab, @mimsumea.bsky.social, UCMR and @scilifelab.se — including Sena Gizem Süer, @jpjarnoux.bsky.social, Cemal Erdem, @andrenmateus.bsky.social and @kavican.bsky.social

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Jérôme Arnoux @jpjarnoux.bsky.social · 17/09/2026

🦠 Bacterial gene expression is not a reliable proxy for protein levels, at least not under stress. Our new paper in PNAS shows how far mRNA and protein diverge, across three pathogens and 10 stress conditions. www.pnas.org/doi/10.1073/... #Pathogen #RNA #protein #MachineLearning

pnas.org

PNAS

Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...

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Reposted by Jérôme Arnoux

David Vallenet @vallenet.bsky.social · 10/08/2026

🧬 PanGBank is now available! • 4,600+ prokaryotic #pangenomes, 393,000+ genomes • #PPanGGOLiN graph partitioning, RGPs & Modules • User-friendly web interface, API & CLI 🌐 pangbank.genoscope.cns.fr 🎓 Try it in on #AMR in A. baumannii : shorturl.at/Vw3zc #ABRomics @ifb-elixir-fr.bsky.social

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Jérôme Arnoux @jpjarnoux.bsky.social · 20/07/2026

Proud to announce that PANORAMA just came out in @plos.org Computational Biology🧬 Paper: journals.plos.org/ploscompbiol... Code: github.com/labgem/PANOR... Docs: panorama.readthedocs.io/latest/ #Bioinformatics #Pangenomics #ComparativeGenomics #Microbiology #OpenScience 🧵 Here's what it does 👇

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Reposted by Jérôme Arnoux

LABGeM @genolabgem.bsky.social · 15/07/2026

🧬 We're thrilled that PANORAMA has been published! An open-source method to predict & compare biological systems across bacterial pangenomes. Built on PPanGGOLiN, it runs at #pangenome scale in minutes vs. hours for genome-by-genome tools. 📄 doi.org/10.1371/jour... @jpjarnoux.bsky.social

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Reposted by Jérôme Arnoux

CNRS @cnrs.fr · 03/03/2026

En élucidant le mécanisme qui rend le champignon microscopique Candida albicans capable de provoquer des mycoses, une équipe du CNRS ouvre la voie à de nouvelles pistes thérapeutiques.

lejournal.cnrs.fr

Comment une levure devient mycose

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Reposted by Jérôme Arnoux

IceLab @icelabumu.bsky.social · 06/02/2026

New tutorial on the map equation from IceLab's @mrosvall.bsky.social 👍 see post below!

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Reposted by Jérôme Arnoux

CNRS @cnrs.fr · 04/02/2026

#Communiqué 🗞️ Une équipe a cartographié les correspondances entre les sillons cérébraux et les empreintes laissées sur les endocrânes à partir de sujets vivants afin de mieux reconstituer les cerveaux de nos ancêtres. 🧠 👉 www.cnrs.fr/fr/presse/le...

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Jérôme Arnoux @jpjarnoux.bsky.social · 02/02/2026

Happy to announce that I've started my postdoctoral position at @icelabumu.bsky.social ! 🎉 My project focuses on developing AI models (ML/DL) to predict protein levels from RNA-seq data in bacterial infections, to identify new therapeutic targets to combat #AMR🦠🤖 #AIforScience #Postdoc

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Reposted by Jérôme Arnoux

LABGeM @genolabgem.bsky.social · 12/06/2025

Congratulations to @jpjarnoux.bsky.social who just achieved a major milestone by successfully defending his thesis! 🎓✨ Welcome to the world of doctors! #AcademicLife #ProudPI #pangenomics @genoscopeumr.bsky.social‬ @univparissaclay.bsky.social @cea.fr @univevry.bsky.social

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