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guilhemroyer.bsky.social

@guilhemroyer.bsky.social
19 followers 48 following 5 posts
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guilhemroyer.bsky.social @guilhemroyer.bsky.social · 07/09/2026
We're talking about MIC in CMI, with the best title you can find today www.clinicalmicrobiologyandinfection.org/article/S119...
clinicalmicrobiologyandinfection.org
Drop the MICs: rethinking the routine use of minimum inhibitory concentrations
In recent years, the minimum inhibitory concentration (MIC) value has become a key parameter for assessing antibiotic susceptibility and guiding antimicrobial therapy. This reflects the growing emphas...
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Reposted by @guilhemroyer.bsky.social
David Vallenet @vallenet.bsky.social · 10/08/2026
🧬 PanGBank is now available! • 4,600+ prokaryotic #pangenomes, 393,000+ genomes • #PPanGGOLiN graph partitioning, RGPs & Modules • User-friendly web interface, API & CLI 🌐 pangbank.genoscope.cns.fr 🎓 Try it in on #AMR in A. baumannii : shorturl.at/Vw3zc #ABRomics @ifb-elixir-fr.bsky.social
PanGBank web interface
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guilhemroyer.bsky.social @guilhemroyer.bsky.social · 28/02/2026
Nearly ten years after starting my PhD, excited to share our study on the metabolic diversity of extraintestinal pathogenic E. coli. An exciting journey with @vallenet.bsky.social sky.social (@genolabgem.bsky.social) and Erick Denamur (@iame-umr1137.bsky.social). journals.asm.org/doi/10.1128/... 1/3
sky.social
SKY
We provide worldclass products and services for marketers, influencers, creatives, artists, fans, professionals, businesses, everybody on this planet and beyond.
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LABGeM @genolabgem.bsky.social · 05/01/2026
🚀 New preprint out! We are happy to introduce PANORAMA, a new bioinformatics tool for comparative pangenomics, designed to predict and compare biological systems across prokaryotic pangenomes. It has been developed by @jpjarnoux.bsky.social 📄 Preprint: doi.org/10.64898/202...
doi.org
Panorama: a robust pangenome-based method for predicting and comparing biological systems across species
Over the last decade, the expansion in the number of available genomes has profoundly transformed the study of genetic diversity, evolution, and ecological adaptation in prokaryotes. However, traditio...
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Reposted by @guilhemroyer.bsky.social
Jeunes microbiologistes de la SFM @jm-sfm.bsky.social · 16/12/2025
🏅 Prix Poster : Lucie Bastien et Vincenette Lopez
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Reposted by @guilhemroyer.bsky.social
bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 19/09/2025
Evidence for Neolithic acquisition of the high pathogenic island by Escherichia coli followed by recent selection www.biorxiv.org/content/10.1101/202…
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guilhemroyer.bsky.social @guilhemroyer.bsky.social · 15/09/2025
Metabolic signatures of extraintestinal pathogenic E. coli Using a pangenome-based approach and metabolic pathway predictions, we investigated metabolic features associated with both lifestyle and phylogenetic background www.biorxiv.org/content/10.1... @vallenet.bsky.social @iame-umr1137.bsky.social
biorxiv.org
Identification of specific metabolic capacities associated with major extraintestinal pathogenic Escherichia coli lineages
Bacterial niche colonization relies on multiple factors, among which the metabolic capacity to utilize specific substrates is pivotal, especially within complex microbiota where nutrient competition i...
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Reposted by @guilhemroyer.bsky.social
Guillaume GAUTREAU @guigau.bsky.social · 20/01/2025
1/9 🚨 New preprint alert! Frustrated by strange results with your metagenomic data? Meet CroCoDeEL, an accurate, easy-to-use tool to detect and quantify cross-sample contamination—no need for negative controls or sample positions! 🔗 doi.org/10.1101/2025...
doi.org
CroCoDeEL: accurate control-free detection of cross-sample contamination in metagenomic data
Metagenomic sequencing provides profound insights into microbial communities, but it is often compromised by technical biases, including cross-sample contamination. This underexplored phenomenon arise...
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