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bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 10/08/2026

PanGBank: a large-scale resource of precomputed microbial pangenomes built with PPanGGOLiN www.biorxiv.org/content/10.64898/20…

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David Vallenet @vallenet.bsky.social · 10/08/2026

📄 The PanGBank preprint available here: doi.org/10.64898/202...

doi.org

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David Vallenet @vallenet.bsky.social · 10/08/2026

🧬 PanGBank is now available! • 4,600+ prokaryotic #pangenomes, 393,000+ genomes • #PPanGGOLiN graph partitioning, RGPs & Modules • User-friendly web interface, API & CLI 🌐 pangbank.genoscope.cns.fr 🎓 Try it in on #AMR in A. baumannii : shorturl.at/Vw3zc #ABRomics @ifb-elixir-fr.bsky.social

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Jérôme Arnoux @jpjarnoux.bsky.social · 20/07/2026

Proud to announce that PANORAMA just came out in @plos.org Computational Biology🧬 Paper: journals.plos.org/ploscompbiol... Code: github.com/labgem/PANOR... Docs: panorama.readthedocs.io/latest/ #Bioinformatics #Pangenomics #ComparativeGenomics #Microbiology #OpenScience 🧵 Here's what it does 👇

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LABGeM @genolabgem.bsky.social · 15/07/2026

🧬 We're thrilled that PANORAMA has been published! An open-source method to predict & compare biological systems across bacterial pangenomes. Built on PPanGGOLiN, it runs at #pangenome scale in minutes vs. hours for genome-by-genome tools. 📄 doi.org/10.1371/jour... @jpjarnoux.bsky.social

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LABGeM @genolabgem.bsky.social · 01/07/2026

Big year for LABGeM 🎉 Our lab members are presenting 7 posters this year at @jobim2026.bsky.social — proud to showcase the breadth of research happening in our group! @genoscopeumr.bsky.social @cea.fr

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James McInerney @jomcinerney.bsky.social · 04/03/2026

This looks absolutely great. For those of us interested in pangenomes, I am sure this will be a super place to get data and the interface is very clean (plotly). Congrats to the authors (I don't know if they are on bsky): pangbank.genoscope.cns.fr

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guilhemroyer.bsky.social @guilhemroyer.bsky.social · 28/02/2026

Nearly ten years after starting my PhD, excited to share our study on the metabolic diversity of extraintestinal pathogenic E. coli. An exciting journey with @vallenet.bsky.social sky.social (@genolabgem.bsky.social) and Erick Denamur (@iame-umr1137.bsky.social). journals.asm.org/doi/10.1128/... 1/3

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LABGeM @genolabgem.bsky.social · 12/01/2026

📢 Hiring: Bioinformatics Engineer position funded by the ANR PanGAIMiX, for the development of new methods in the PPanGGOLiN software suite. 💻 Build cool tools for #pangenomics 🔬 computer science × biology 📍 Evry, France | ⏳ Fixed-term contract 👉 Interested? Contact us 🔗 bit.ly/3NfSP8o

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Engineer for the development of new methods in pangenomics - LABGeM

Prokaryotes —bacteria and archaea— are diverse, ubiquitous organisms with vast impacts on health, soil, and ocean ecosystems. Large-scale genome sequencing and pangenomics have revealed their molecula...

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LABGeM @genolabgem.bsky.social · 05/01/2026

🚀 New preprint out! We are happy to introduce PANORAMA, a new bioinformatics tool for comparative pangenomics, designed to predict and compare biological systems across prokaryotic pangenomes. It has been developed by @jpjarnoux.bsky.social 📄 Preprint: doi.org/10.64898/202...

doi.org

Panorama: a robust pangenome-based method for predicting and comparing biological systems across species

Over the last decade, the expansion in the number of available genomes has profoundly transformed the study of genetic diversity, evolution, and ecological adaptation in prokaryotes. However, traditio...

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LABGeM @genolabgem.bsky.social · 03/12/2025

Our PhD student Clémence Lauden is presenting her poster on Metapangenomic analysis within the Thermococcales at #Pangenome25 conference in Valencia🧬🌐 If you’re attending , don’t miss the chance to stop by, ask questions, and chat about the project. See you there! 👋🎓 #pangenome #archaea

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LABGeM @genolabgem.bsky.social · 03/12/2025

@tlemane.bsky.social presented PanGBank at #Pangenome25 conference in Valencia 🧬🌐 We’re thrilled to share this resource with the community and to see the growing interest in #pangenomics

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LABGeM @genolabgem.bsky.social · 03/12/2025

We’ve just released a set of Google Colab tutorials to help you get started with PanGBank. 🧬💻 github.com/labgem/PanGB... Whether you're new to the resource or looking to dig deeper, these step-by-step notebooks make it easy to jump in. 🔗 Try them out and tell us what you think! #pangenomics

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LABGeM @genolabgem.bsky.social · 03/12/2025

We’re excited to announce the launch of the beta version of PanGBank website! 🧬🌐 pangbank.genoscope.cns.fr PanGBank is a web-based platform for exploring, analyzing, and downloading pangenomes created with #PPanGGOLiN. 🔗 Dive in, test it out, and let us know what you think! #pangenome

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LABGeM @genolabgem.bsky.social · 03/12/2025

@genolabgem.bsky.social was there with @j-main-guy.bsky.social and @tlemane.bsky.social presenting the PanGBank database and new developments in metapangenomics #pangenome #PPanGGOLiN

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LABGeM @genolabgem.bsky.social · 02/10/2025

🚀 We’re looking for a Master’s student to join the PanGAIMiX project to develop workflows for pangenome graph functional annotation at large scale 💻 Build cool tools for big genomic data 🔬 computer science × biology 📍 Evry | 📅 january 2026 | ⏳ 6 months 👉 Interested? Contact us bit.ly/4mMLLfp

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LABGeM @genolabgem.bsky.social · 05/09/2025

A new opportunity to join the team !

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LABGeM @genolabgem.bsky.social · 12/06/2025

We're on the lookout for a talented Software Development Engineer to join our team permanently at CEA and work on the MicroScope platform! 🚀💻 If you're passionate about software development and ready for a new challenge, we'd love to hear from you. @genoscopeumr.bsky.social‬ @cea.fr ‪

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LABGeM @genolabgem.bsky.social · 12/06/2025

Thrilled to announce the successful defense of the Habilitation à Diriger des Recherches (HDR) by Violette Da Cunha! 🎉📚 Congratulations on this well-deserved achievement! #AcademicLife #Archaea @genoscopeumr.bsky.social‬ @univparissaclay.bsky.social @univevry.bsky.social

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LABGeM @genolabgem.bsky.social · 12/06/2025

Congratulations to @jpjarnoux.bsky.social who just achieved a major milestone by successfully defending his thesis! 🎓✨ Welcome to the world of doctors! #AcademicLife #ProudPI #pangenomics @genoscopeumr.bsky.social‬ @univparissaclay.bsky.social @cea.fr @univevry.bsky.social

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LABGeM @genolabgem.bsky.social · 12/06/2025

We've been keeping a low profile for a while, but we've got lots of good news...

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LABGeM @genolabgem.bsky.social · 17/03/2025

We're offering a fully funded PhD to work on new methods for microbial #pangenomics using #LLM in collaboration with @guigau.bsky.social and Christophe Ambroise. labgem.genoscope.cns.fr/2025/03/17/f... Apply before April 27th. @genoscopeumr.bsky.social @cea-paris-saclay.bsky.social

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Guillaume GAUTREAU @guigau.bsky.social · 12/02/2025

PPanGGOLiN is now available on Galaxy! usegalaxy.fr/root?tool_id... A huge thanks to Thomas Lacroix, Romane Libouban and @bebatut.bsky.social

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LABGeM @genolabgem.bsky.social · 04/12/2024

MicroScope training in sunny Montpellier in Christmas mode

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