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Gaurav Zinta

@gauravzinta.bsky.social
181 followers 427 following 4 posts

Plant Scientist | Integrative Plant AdaptOmics Lab (iPAL) | CSIR_IHBT | CSIR India | Asst Prof @AcSIR | Alumnus: PostDoc Jian-Kang Zhu Lab; PhD @UAntwerpen Belgium |

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Reposted by Gaurav Zinta
Sjon Hartman @hartman-plantlab.com · 19/08/2025
www.science.org/doi/full/10....
science.org
The small-molecule pifithrin-α deactivates ETR1 to repress shade avoidance in Arabidopsis
Compound PFT-α inhibits shade-induced hypocotyl elongation by mimicking ethylene to inactivate ETR1 and down-regulate PIFs level.
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Reposted by Gaurav Zinta
Genome Biology and Evolution @genomebiolevol.bsky.social · 19/08/2025
Xiao et al. tested the role of genome size in adaptation in 53 Alpine ginger herb populations, finding that genome size has undergone adaptive evolution driven by environmental stress; smaller genomes are advantageous in changing alpine habitats 🔗 doi.org/10.1093/gbe/evaf151 #genome #evolution
An individual of Roscoea tibetica from Shangri-La, located in the mountains of Southwest China. The image in the top right corner illustrates the substantial alterations in the relationship between genome size and stomatal size when transitioning from wild conditions to a common garden environment. Similarly, the image in the lower left corner demonstrates the significant changes in the relationship between stomatal size and stomatal density under the same conditions.
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Reposted by Gaurav Zinta
Ryo Yokoyama @yokoyama-ryo.bsky.social · 16/08/2025
How evolution repeatedly builds complexity: a case study with C4 photosynthesis in Blepharis (Acanthaceae) nph.onlinelibrary.wiley.com/doi/10.1111/... @newphyt.bsky.social
nph.onlinelibrary.wiley.com
How evolution repeatedly builds complexity: a case study with C4 photosynthesis in Blepharis (Acanthaceae)
With over 60 parallel origins representing evolutionary replicates, C4 photosynthesis is well-suited for studying complex trait evolution. However, lineages with diverse C3–C4 intermediate species a.....
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Etienne Bucher 🌾🧬🇪🇺 @plantepigenetics.ch · 11/08/2025
Here’s an interesting new paper on ROS1, an enzyme that removes DNA methylation and that is POSITIVELY controlled by DNA methylation. It’s repression during heat stress 🥵🌱 is crucial to suppress transposon mobility! 🧬 www.nature.com/articles/s41...
nature.com
Plants repress ROS1 expression to attenuate heat-induced transposon burst - Nature Plants
Plants suppress the DNA demethylase ROS1 under heat stress to limit transposon activation, preventing genome instability. This conserved mechanism balances stress adaptation with genome protection.
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Reposted by Gaurav Zinta
Etienne Bucher 🌾🧬🇪🇺 @plantepigenetics.ch · 11/08/2025
And here’s my News & Views on the subject: www.nature.com/articles/s41...
nature.com
Cooling down transposon mobility - Nature Plants
Uncontrolled transposable element (TE) mobility can be deleterious to genome integrity. To protect their genomes, plants have evolved intricate silencing mechanisms that put brakes on these mobile ele...
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Reposted by Gaurav Zinta
Maddy Seale @maddyseale.bsky.social · 15/08/2025
Out in @science.org The crazy sequence of events from planting maize in dense fields. Density-dependent linalool release triggers release of compounds into the soil affecting microbes and plants. Article: www.science.org/doi/10.1126/... Perspective: www.science.org/doi/10.1126/... #PlantScience
science.org
Linalool-triggered plant-soil feedback drives defense adaptation in dense maize plantings
High planting density boosts crop yields but also heightens pest and pathogen risks. How plants adapt their defenses under these conditions remains unclear. In this study, we reveal that maize enhance...
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Reposted by Gaurav Zinta
Javier Santoyo @jsantoyo.bsky.social · 10/08/2025
Analysis of telomere-to-telomere genome of red carrot TXH4 elucidates the role of DcLCYE and DcLCYB1 in lycopene accumulation in carrot. #T2T #RedCarrotGenome #LycopeneAccumulation #PlantGenomics #Genomics @horticulturer.bsky.social academic.oup.com/hr/advance-a...
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Javier Santoyo @jsantoyo.bsky.social · 10/08/2025
Telomere-to-Telomere Genome Assembly of Yellow-Fruited Allotetraploid American Ginseng (Panax quinquefolius L.) Provides Insights into Flavonoid Biosynthesis. #T2T #AmericanGinsengGenome #FlavonoidBiosynthesis #PlantGenomics @horticulturer.bsky.social 🧬 academic.oup.com/hr/advance-a...
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Reposted by Gaurav Zinta
Danve Castroverde @danvec.bsky.social · 01/08/2025
Arabidopsis HSFA1b functions as a heat sensor inhibiting OST1-mediated stomatal closure through its adenylate-cyclase activity www.sciencedirect.com/science/arti...
sciencedirect.com
Arabidopsis HSFA1b functions as a heat sensor inhibiting OST1-mediated stomatal closure through its adenylate-cyclase activity
Global climatic warming profoundly affects plant communities, but details of mechanisms and the identity of sensors controlling plant thermosensing ar…
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Reposted by Gaurav Zinta
Journal of Integrative Plant Biology @jipb.bsky.social · 13/07/2025
Shoot branching is an important #agronomic trait that impacts #plant architecture and #crop productivity. Liu et al. report that the CsphyB–CsPIF4–CsBRC1 module regulates #ABA #biosynthesis and axillary bud outgrowth in #cucumber doi.org/10.1111/jipb... #PlantScience #Phytohormones
doi.org
The CsphyB–CsPIF4–CsBRC1 module regulates ABA biosynthesis and axillary bud outgrowth in cucumber
In cucumber, the phytochrome-interacting factor CsPIF4 interacts with the phytochrome CsphyB and binds to the promoter of BRANCHED1 to activate its expression. BRANCHED1 promotes expression of the ab...
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Reposted by Gaurav Zinta
AoB Plants @aobp.bsky.social · 05/07/2025
♻️ Molecular mechanism of flower colour formation in Rhododendron simsii Planchon revealed by integration of microRNAome and RNAomics by Jun Fu and co-authors Full #openaccess 👉 doi.org/10.1093/aobp... #PlantScience
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Journal of Integrative Plant Biology @jipb.bsky.social · 05/07/2025
🌲 The Pinus radiata Gene Expression ATLAS provides a refined multi-omics platform for Pinus radiata that advances #conifer research and facilitates the evaluation of conserved #plant molecular discoveries across a broader #evolutionary spectrum. 🌲 doi.org/10.1111/jipb... #PlantScience #OpenAccess
Panel featuring a stylized logo featuring the Greek Titan, Atlas, and a conifer cone. The rest of the panel highlights features gathered in the Pinus radiata Multi-Omics Expression Atlas, including (1) Forestry valuable, stress sensitive, (2) Intergenerational memory specificity, and (3) Long introns, conservatively spliced.
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Vinay Shukla @vinayshukla.bsky.social · 02/07/2025
Plants "bleed" too, but through gases! When wounded, ethylene leaks out and oxygen seeps in. This gas shift acts as an alarm, triggering self-repair to seal the breach. Excited to share our new collaborative work uncovering this clever plant mechanism! Excellent summary here, indulge! #plantscience
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Reposted by Gaurav Zinta
Ben Long @botbml.bsky.social · 01/07/2025
Wild relatives to improve heat tolerance of cultivated quinoa (Chenopodium quinoa Willd.): pollen viability and seed number doi.org/10.1093/jxb/...
doi.org
Wild relatives to improve heat tolerance of cultivated quinoa (Chenopodium quinoa Willd.): pollen viability and seed number
Abstract. Quinoa is well-known for high nutritional value and wide adaptability, but it is considered to be heat sensitive. To address that, two tetraploid
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Reposted by Gaurav Zinta
Fritz Kragler @fritz-kragler.bsky.social · 09/04/2025
fascinated by grafting plants have a look at new review about grafting and exchange of of information between plants written with Ralph Bock www.nature.com/articles/s41...
nature.com
The biology of grafting and its applications in studying information exchange between plants - Nature Plants
This Review discusses the uses of grafting in basic and applied research and summarizes our current understanding of the mechanisms involved in the exchange of genes, genomes, RNA molecules and protei...
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Reposted by Gaurav Zinta
Tugce Aktas @aktast.bsky.social · 30/06/2025
We wrote a review on Transposable Elements (TEs) and almost all aspects of TE silencing and their roles in biological processes & disease. www.nature.com/articles/s41...
nature.com
Transcriptional and post-transcriptional regulation of transposable elements and their roles in development and disease - Nature Reviews Molecular Cell Biology
Transposable elements (TEs) comprise nearly half of the human genome. This Review discusses transcriptional and post-transcriptional mechanisms that repress TE activity, how TEs escape this suppressio...
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Nature Portfolio @natureportfolio.nature.com · 29/06/2025
Most staple food crops are expected to experience substantial production losses due to climate change, even when mitigation measures to limit the impact of climate change are considered, according to a study in Nature. The study finds that only rice might avoid substantial losses. 🧪
go.nature.com
Impacts of climate change on global agriculture accounting for adaptation - Nature
Analysis of data on six stable crops, capturing two-thirds of global crop calories, allows estimation of agricultural impacts and the potential of global producer adaptations to reduce output losses owing to climate change.
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bioRxiv Plant Bio @biorxiv-plants.bsky.social · 28/06/2025
Spatial Coordination between Leaf Gradient and Temperature Response in Barley www.biorxiv.org/content/10.1101/202…
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Molecular Plant & Plant Communications @mplantpcom.bsky.social · 25/06/2025
The transcription factor MYB44 suppresses starch synthesis to negatively regulate grain weight and yield in wheat and rice #research #MolecularPlant cell.com/molecular-pl...
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Reposted by Gaurav Zinta
Molecular Plant & Plant Communications @mplantpcom.bsky.social · 25/06/2025
Smart Nanocarriers for Plant Genetic Engineering #commentary #PlantCommunications cell.com/plant-commun...
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The Plant Journal @theplantjournal.bsky.social · 25/06/2025
💡𝐑𝐞𝐬𝐞𝐚𝐫𝐜𝐡 𝐇𝐢𝐠𝐡𝐥𝐢𝐠𝐡𝐭 𝑯𝒐𝒘 𝑫𝑬𝑨𝑹4 𝒌𝒆𝒆𝒑𝒔 𝒑𝒍𝒂𝒏𝒕𝒔 𝒄𝒐𝒐𝒍 𝒖𝒏𝒅𝒆𝒓 𝒑𝒓𝒆𝒔𝒔𝒖𝒓𝒆 Read this nice highlight by @gwenkirschner.bsky.social about the role of DEAR4 in linking LLPS to heat-responsive gene regulation. 📖 doi.org/10.1111/tpj.70276 Find original research by Wang, Gong, & Zhu 👉 doi.org/10.1111/tpj.70172
doi.org
How DEAR4 keeps plants cool under pressure
Click on the article title to read more.
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Reposted by Gaurav Zinta
bioRxiv Plant Bio @biorxiv-plants.bsky.social · 23/06/2025
HSP90-mediated stress resilience in male gametophyte of Arabidopsis thaliana www.biorxiv.org/content/10.1101/202…
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bioRxiv Plant Bio @biorxiv-plants.bsky.social · 23/06/2025
Multi-Omics Analysis of Heat Stress-Induced Memory in Arabidopsis www.biorxiv.org/content/10.1101/202…
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bioRxiv Plant Bio @biorxiv-plants.bsky.social · 06/06/2025
Redesigning petal shape, size, and color in soybean reveals unexpected phenotypes for floral organ development www.biorxiv.org/content/10.1101/202…
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Chenxin Li, PhD @chenxinli2.bsky.social · 21/06/2025
Long reads equivalent of ATAC-seq applied to maize - treating maize protoplast with Hia5 MTase (m6A methyltransferase) followed by long reads sequencing. "The regulatory potential of transposable elements in maize" From: www.nature.com/articles/s41...
nature.com
The regulatory potential of transposable elements in maize - Nature Plants
Long-read chromatin assay reveals (1) a novel class of accessible chromatin regions, (2) accessibility within individual LTR retrotransposons and (3) the relationship between diffuse accessibility, ge...
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Chenxin Li, PhD @chenxinli2.bsky.social · 20/06/2025
A method to obtain transgene-free genome-edited plants by killing transgenic gametes using gamete-expressed Barnase. From: www.cell.com/molecular-pl... #PlantScience
cell.com
A highly efficient and environmentally friendly strategy to obtain transgene-free genome-edited progeny in flowering plants
Obtaining foreign DNA-free crops after genome editing is essential for agricultural applications, because of the current regulatory policies on gene-edited plants in various countries. However, it is ...
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Ajay Kumar Pandey @pandeyak1974.bsky.social · 15/06/2025
Coming soon!
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Lee Sweetlove @leesweetlove.bsky.social · 13/06/2025
Itaconate, the poster-child for metabolic reprogramming in animal immunity, now comes out to play in plants! www.science.org/doi/pdf/10.1...
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Larry Miller, PhD @larrymillerphd.bsky.social · 12/06/2025
🧪If you or a colleague wish to leave academia for Biotech or Pharma, I hope this brief tip sheet might help. Your research, leadership, project management, & data skills transfer. Reframing your CV, speaking industry language, and building a network are key wins. #SciComm #LifeScienceJobs 🧬🔬🎓💊
larrymillerphd.com
From Academia to Industry: A Brief Guide for Life Scientists
For life science looking to leave academia and enter the biotechnology or pharmaceutical industries, the transition can feel daunting. While academic and industrial science share a common foundation i...
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Conor McClune @cmcclune.bsky.social · 11/06/2025
Today in Nature we report a systematic strategy to activate & identify gene sets in plants. We identify 8 new genes from the yew tree's Taxol biosynthetic pathway, enabling us to engineer tobacco with 17- & 20-gene pathways to Taxol precursors baccatin III & deBz-deoxy-Taxol #SingleCell #secmet 🧬🧪🌾
nature.com
Discovery of FoTO1 and Taxol genes enables biosynthesis of baccatin III - Nature
An approach that combines single-nucleus RNA sequencing and multiplexed perturbation identifies genes that enable the biosynthesis of direct precursors of the anti-cancer drug Taxol, whose curren...
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Nature Plants @natplants.nature.com · 06/06/2025
New Article: "Leaf venation network evolution across clades and scales" rdcu.be/epLNP Evolution of leaf venation networks, from fewer, corrugated veins to high vein density and smoother loops. Herbivory as a potential driver of venation architectural changes.
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Annals of Botany @annbot.bsky.social · 06/06/2025
📚 Read the full study by Antonio Ferrante & Petronia Carillo in @annbot.bsky.social (12/12) 👉 doi.org/pqc5 #PlantScience #LeafSenescence #GeneRegulation #AoBpapers
doi.org
Leaf senescence-associated genes and transcriptional changes under dark conditions
AbstractBackground. Leaf senescence is a high regulated and complex process that can be trigged by dark conditions, as demonstrated in various studies. Dar
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Greg Priest @gregpriest.bsky.social · 24/05/2025
A new study in Cell finds claims that when a variety of rice is subjected to cold stress, it generates adaptive cold tolerance. This tolerance is epigenetically mediated and is heritable for at least three generations. 🐋🌱🧠🗃🦋🦫🧪 #EvoBio
cell.com
Inheritance of acquired adaptive cold tolerance in rice through DNA methylation
Multigenerational cold stress induces heritable ACT1 promoter hypomethylation, enabling rice to acquire cold tolerance for high-latitude adaptation.
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Chenxin Li, PhD @chenxinli2.bsky.social · 01/06/2025
"Haploid induction in sweet potato by activating the AP2/ERF family transcription factor IbBBM" From: onlinelibrary.wiley.com/doi/full/10.... Since sweet potato is hexaploid, the corresponding haploid is actually triploid then?
onlinelibrary.wiley.com
Haploid induction in sweet potato by activating the AP2/ERF family transcription factor IbBBM
Click on the article title to read more.
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Sjon Hartman @hartman-plantlab.com · 23/05/2025
Make way auxin 😉 There's a new player in town. #plantscience www.nature.com/articles/s41...
nature.com
Machine-learning meta-analysis reveals ethylene as a central component of the molecular core in abiotic stress responses in Arabidopsis - Nature Communications
Machine-learning meta-analysis reveals ethylene as a central component of the molecular core in abiotic stress responses in Arabidopsis.
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Nature Plants @natplants.nature.com · 23/05/2025
The May 2025 issue is now fully online, with a cover highlighting the cell wall of ferns, from: "Comparative transcriptomics in ferns reveals key innovations and divergent evolution of the secondary cell walls" rdcu.be/enhGp
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Nature Plants @natplants.nature.com · 23/05/2025
New Editorial: "Rethinking field trials" rdcu.be/enhFe
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Mary Williams @PlantTeaching @plantteaching.bsky.social · 12/05/2025
This is a really interesting article! It provides a very clear set of things to think about and suggestions to follow to move your idea from "idea" to something that actually is being used by society. One cool tip is to browse The Lens (www.lens.org) to explore the patent and commercial space.
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 09/05/2025
It is sad that even basic research needs to be defended with utility. For me, basic research is in the same category as art: civilized societies can't do without it, because we all want to know who we are and what our place in the natural world is -- questions that only science can answer.
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Maddy Seale @maddyseale.bsky.social · 02/05/2025
2. Adaptation facing climate change paper here: www.science.org/doi/10.1126/... and the related Perspective here: www.science.org/doi/10.1126/...
science.org
Adaptation and gene flow are insufficient to rescue a montane plant under climate change
Climate change increasingly drives local population dynamics, shifts geographic distributions, and threatens persistence. Gene flow and rapid adaptation could rescue declining populations yet are seld...
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Gitta Coaker @gittacoaker.bsky.social · 27/04/2025
onlinelibrary.wiley.com/doi/full/10....
onlinelibrary.wiley.com
Rhizobium rhizogenes A4‐derived strains mediate hyper‐efficient transient gene expression in Nicotiana benthamiana and other solanaceous plants
Agroinfiltration, a method utilizing agrobacteria to transfer DNA into plant cells, is widely used for transient gene expression in plants. Besides the commonly used Agrobacterium strains, Rhizobium ...
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Plantae.org @plantaeofficial.bsky.social · 25/04/2025
Plant Science Research Weekly -- Review: Celebrating 150 years of Arabidopsis genetics (The Plant Cell) @alonsostepanovalab.bsky.social (Summary by Xavier Ozowara) buff.ly/Bii8zYX #PlantaePSRW
buff.ly
Review: Celebrating 150 years of Arabidopsis genetics | Plantae
The first known report of an Arabidopsis thaliana mutant appeared approximately 150 years ago (1873). In the intervening years, Arabidopsis has become an essential model for plant genetic research…
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SEBiology @sebiology.bsky.social · 25/04/2025
Deadline is fast approaching so do not miss this !
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Francis M. Martin @fmartin54.bsky.social · 25/04/2025
Conventional and organic farms with more intensive management have lower soil functionality | Science www.science.org/doi/10.1126/...
science.org
Conventional and organic farms with more intensive management have lower soil functionality
Organic farming is often considered to be more sustainable than conventional farming. However, both farming systems comprise highly variable management practices. In this study, we show that in organi...
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Clément Goubert @clementgoubert.bsky.social · 25/04/2025
go.nature.com/3S27sLp
go.nature.com
Celebrating DNA Day with transposable elements
Each year on DNA Day, we celebrate the DNA double helix structure and the Human Genome Project's completion. Here we dive into a fascinating genomic component: transposable elements. Once seen as mere...
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Mary Williams @PlantTeaching @plantteaching.bsky.social · 23/04/2025
Nice editorial from Pablo Manavella, the new Editor in Chief of @theplantcell.bsky.social. Society journals like The Plant Cell directly support science and scientists. Have a look and share your thoughts with him! academic.oup.com/plcell/artic...
academic.oup.com
Embracing the challenges ahead: a new chapter for the plant cell leadership
Dear Readers and Friends of The Plant Cell,
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Trends in Ecology & Evolution @cp-trendsecolevo.bsky.social · 23/04/2025
Online now: Towards an integrative mechanistic framework for biodiversity–consumer relationships
dlvr.it
Towards an integrative mechanistic framework for biodiversity–consumer relationships
Terrestrial plant diversity plays a pivotal role in influencing the abundance, diversity, and impacts of herbivores and pathogens (collectively, plant consumers). However, it is unclear whether the relationships between biodiversity and herbivory reflect the same underlying ecological mechanisms as the relationships between biodiversity and disease. This uncertainty results in part from decades of independent, siloed research on each consumer group. We propose that, across herbivores and pathogens, plant diversity–consumer relationships arise from five fundamental factors: (1) density of a focal plant, (2) total plant biomass, (3) plant neighborhood quality, (4) resource diversity, and (5) structural complexity. By matching established hypotheses to these five fundamental factors, we highlight opportunities for growth in the rapidly developing field of plant–consumer interactions.
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Horticulture Research @horticulturer.bsky.social · 17/04/2025
Unveiled T2T genome of Centella asiatica! Unlocks secrets of saponin biosynthesis. #CentellaGenome #T2T @OxfordJournals Details: doi.org/10.1093/hr/u...
doi.org
Telomere-to-telomere genome assembly and 3D chromatin architecture of Centella asiatica insight into evolution and genetic basis of triterpenoid saponin biosynthesis
Abstract. Centella asiatica is renowned for its medicinal properties, particularly due to its triterpenoid saponins, such as asiaticoside and madecassoside
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Steven Burgess @sjb287.bsky.social · 19/04/2025
For anyone doing #photosynthesis gas exchange analysis, I can't recommend the new R package PhotoGEA highly enough for data processing. Comes with excellent guide to use and considerations, QC analysis. Great for students Paper: doi.org/10.1111/pce.... Website: eloch216.github.io/PhotoGEA/
eloch216.github.io
Photosynthetic Gas Exchange Analysis
Read, process, fit, and analyze photosynthetic gas exchange measurements. Documentation is provided by several vignettes; also see Lochocki, Salesse-Smith, & McGrath (2025) <doi:10.1111/pce.15501>.
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