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Sid Venkatesh

@flash-point.bsky.social
172 followers 258 following 14 posts

Assistant Professor at ISB and UW Microbiology in Seattle, WA | Lover of collaboration, generosity and trust in science | Opinions are my own | venkatesh.isbscience.org

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Reposted by Sid Venkatesh
Sean Gibbons 🦠💩 @gibbological.bsky.social · 22/04/2026
MolES’ Scientific Exchange sparks microbial engineering collaborations www.moles.washington.edu/moles-scient... @flash-point.bsky.social @isbscience.org @uwgenome.bsky.social @uwbioe.bsky.social @basicsci.fredhutch.org @uwmnewsroom.bsky.social
moles.washington.edu
MolES’ Scientific Exchange sparks microbial engineering collaborations – Molecular Engineering & Sciences Institute
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Reposted by Sid Venkatesh
Ram Savan @ramlabuw.bsky.social · 23/12/2025
Painted stork carefully selecting a stick for its nest. Taken at Sultanpur National Park, India. #birds #wildlife #photography #pnw #india
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Jennifer Luck, PhD 🍀 @tinyjenni.bsky.social · 04/12/2025
My dissertation work was finally published! Check it out below! Allele-specific zinc metalloprotease B influences cardiac damage during invasive pneumococcal disease: Cell Reports www.cell.com/cell-reports... #microsky #science #microbiology #pathology #pathobiology
cell.com
Allele-specific zinc metalloprotease B influences cardiac damage during invasive pneumococcal disease
Luck et al. identify the bacterial protein ZmpB as a key factor in heart damage during severe Streptococcus pneumoniae infections. Variants of ZmpB with FIVAR domains enable cardiac cell invasion, whi...
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Reposted by Sid Venkatesh
ISB @isbscience.org · 17/12/2025
@isbscience.org postdoc @n8ritz.bsky.social (Venkatesh Lab) was selected as a 2026 WRF Postdoc Fellow. The fellowship supports early-career researchers pursuing high-impact science. Congrats Nate! 🎉 @flash-point.bsky.social More: tinyurl.com/y772pr2j Venkatesh Lab: venkatesh.isbscience.org
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Harmit Singh Malik @harmitmalik.bsky.social · 17/12/2025
The imminent rise in healthcare insurance costs could not have been better timed with the imminent rise of infectious diseases over the winter holidays. Yay us!
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Sean Gibbons 🦠💩 @gibbological.bsky.social · 12/12/2025
See you in less than 1 hour for the kickoff to the 2025 @isbscience.org Virtual Microbiome Symposium! This year, we will explore microbial metabolites and their impacts on the host. @flash-point.bsky.social will start things off at 9AM Pacific Time. #ISBmicro2025 isbscience.org/events/2025-...
isbscience.org
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Sid Venkatesh @flash-point.bsky.social · 03/12/2025
@isbscience.org's Dr. Mary Brunkow gave a "practice talk" for her Nobel Lecture, and it was riveting! Mapping the Foxp3 locus was an arduous task in the late 90s, and this recognition is a fitting tribute. Thrilled for you, Mary! Your humility and grace are a wonderful example for all of us.
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Sid Venkatesh @flash-point.bsky.social · 02/12/2025
Please join us on Dec 12th for the 2025 @isbscience.org Virtual Microbiome Symposium, focused on "Gut Microbial Metabolites and Their Impact on Host Systems". Co-organized by @gibbological.bsky.social Registration is free & we have a fantastic line-up of experts! isbscience.org/events/2025-...
isbscience.org
2025 ISB Virtual Microbiome Symposium - Institute for Systems Biology (ISB)
The gut’s microbial ecosystem produces diverse metabolites that actively shape neural, immune, and endocrine function. Join leading researchers on December 12 as they share new discoveries into these ...
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Reposted by Sid Venkatesh
Sean Gibbons 🦠💩 @gibbological.bsky.social · 13/11/2025
📣 Join us for the 2025 @isbscience.org Virtual Microbiome Symposium, focused on "Gut Microbial Metabolites and Their Impact on Host Systems". co-director - @flash-point.bsky.social 🦠💥 It's free, & we have an amazing line-up of speakers! Dec. 12th. Please share! isbscience.org/2025-isb-vir...
isbscience.org
2025 ISB Virtual Microbiome Symposium - Institute for Systems Biology (ISB)
Symposium Schedule All presentation times are shown in Pacific Daylight Time (GMT -07:00 / UTC -07:00) Time Talk / Session 9:00 Welcoming remarks by Sid Venkatesh Session One: Neural Effects
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Ram Savan @ramlabuw.bsky.social · 10/10/2025
luma.com/9bz7uoqn
luma.com
Discovery Series, Dr. Naeha Subramanian, Associate Professor, Institute for Systems Biology (ISB) · Luma
Decoding Lyme Disease: Big Data Meets the Immune System Every year nearly half a million Americans are diagnosed with Lyme disease, yet the biology of this…
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Reposted by Sid Venkatesh
Science in Seattle @scienceinseattle.com · 01/10/2025
Dr. Meghan Koch from @fredhutch.org has discovered a biological mechanism sprung in the first week of life that trains a mouse pup’s #ImmuneSystem to tolerate harmless gut bugs and new foods. ⚗️ Abstract: bit.ly/4nt6qGh 📰 Press release: bit.ly/46N7vBY
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Sean Gibbons 🦠💩 @gibbological.bsky.social · 08/10/2025
Rubbing shoulders with a @nobelprize.bsky.social laureate! 🤩What a week! Couldn’t have happened to a nicer person: isbscience.org/news/press-r... @isbscience.org @naehasubramanian.bsky.social @flash-point.bsky.social @annabiosys.bsky.social
Left to right: Sean Gibbons, Naeha Subramanian, Mary Brunkow, Anna Kuchina, and Sid Venkatesh
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ISB @isbscience.org · 06/10/2025
This morning, @isbscience.org's Dr. Mary Brunkow was awarded the 2025 Nobel Prize in Physiology or Medicine! Dr. Brunkow shares the award with Fred Ramsdell and Shimon Sakaguchi. Read the press release here: www.nobelprize.org/.../medicine.... What a tremendous honor! Congratulations!
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Science News @scinews.bsky.social · 06/10/2025
The 2025 #NobelPrize in Physiology or Medicine has been awarded to Mary E. Brunkow, Fred Ramsdell and Shimon Sakaguchi “for their discoveries concerning peripheral immune tolerance.”
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Ram Savan @ramlabuw.bsky.social · 06/10/2025
www.nobelprize.org/prizes/medic...
nobelprize.org
Nobel Prize in Physiology or Medicine 2025
The Nobel Prize in Physiology or Medicine 2025 was awarded to Mary E. Brunkow, Fred Ramsdell and Shimon Sakaguchi “for their discoveries concerning peripheral immune tolerance.”
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Sid Venkatesh @flash-point.bsky.social · 06/10/2025
Many congratulations, Mary Brunkow! Couldn’t be happier for you and @isbscience.org ! ♥️ www.nobelprize.org
nobelprize.org
The official website of the Nobel Prize - NobelPrize.org
The Nobel Prize rewards science, humanism and peace efforts. This is one of the central concepts in the will of Alfred Nobel, and it also permeates the outreach activities that have been developed for...
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Elaine Hsiao @pipethero.bsky.social · 04/01/2025
It was an honor to highlight this fantastic work by Cheng and Venkatesh et al of the Gordon lab. Many thanks to them, and to Francis Chandra for doing all the heavy lifting on this Spotlight! @cp-cellchembiol.bsky.social
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Elaine Hsiao @pipethero.bsky.social · 04/01/2025
Happy to kick off 2025 with this new review on gut microbiota-neuroepithelial signaling by the very talented Taka Ohara!
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Reposted by Sid Venkatesh
Sean Gibbons 🦠💩 @gibbological.bsky.social · 03/01/2025
Great highlight by Chandra and @pipethero.bsky.social on recently published work by my colleague @flash-point.bsky.social (from his postdoc work) on endocannabanoids produced by specific members of the gut microbiota that likely impact host satiety/appetite. @isbscience.org doi.org/10.1016/j.ch...
doi.org
Redirecting
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Neel Shah @nshahlab.bsky.social · 26/12/2024
Happy to see this paper, led by former grad student Cassie Chartier, out in its final form at Protein Science! We characterized the interaction between PTP1B and the ubiquitous signaling adaptor Grb2 and identified new PTP1B interactors along the way! onlinelibrary.wiley.com/doi/full/10....
onlinelibrary.wiley.com
Allosteric regulation of the tyrosine phosphatase PTP1B by a protein–protein interaction
The rapid identification of protein–protein interactions has been significantly enabled by mass spectrometry (MS) proteomics-based methods, including affinity purification-MS, crosslinking-MS, and pr...
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Reposted by Sid Venkatesh
Neel Shah @nshahlab.bsky.social · 24/12/2024
Excited to share a new preprint from our lab, joint with the Bussemaker group, where we combined peptide display and selection with biophysically interpretable machine learning to build affinity models for SH2-phosphopeptide recognition. www.biorxiv.org/content/10.1...
biorxiv.org
Accurate sequence-to-affinity models for SH2 domains from multi-round peptide binding assays coupled with free-energy regression
Short linear peptide motifs play important roles in cell signaling. They can act as modification sites for enzymes and as recognition sites for peptide binding domains. SH2 domains bind specifically t...
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Joseph Luna @virologistjoe.bsky.social · 20/12/2024
Fantastic work! Congrats @nandangokhale.bsky.social, @ramlabuw.bsky.social and team.
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Sid Venkatesh @flash-point.bsky.social · 17/12/2024
Finally caught up with some beautiful work from Alex Meeske in Nature! His lab has identified proteins in Listeria that either substitute for Cas in Cascade complexes (anti-type I-B CRISPR immunity) or degrade crRNA (anti-type VI-A CRISPR immunity). Inspiring stuff! www.nature.com/articles/s41...
nature.com
Diverse viral cas genes antagonize CRISPR immunity - Nature
We demonstrate that phages have co-opted cas genes from CRISPR defence systems, which subsequently evolved anti-defence functions.
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Sid Venkatesh @flash-point.bsky.social · 12/12/2024
Warm congratulations to my @isbscience.org colleagues @gibbological.bsky.social, Andrew Magis, and team for winning a 2024 Amazon Web Services IMAGINE grant for developing "My Digital Gut", an online platform for personalized, predictive, and preventive healthcare! isbscience.org/news/2024/12...
isbscience.org
ISB Named Winner of 2024-2025 Amazon Web Services IMAGINE Grant for Nonprofits
ISB was selected as a winner of the 2024 Amazon Web Services (AWS) IMAGINE Grant, which will support continued development of My Digital Gut.
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David Weiss @dweisslab.bsky.social · 02/12/2024
Bactericidal antibiotics release bacterial DNA that activates TLR9, while static antibiotics do not. This can profoundly impact treatment outcome. Should clinicians consider this when choosing antibiotics to prescribe? Amazing work by Julia Gross and collaboration with Iain Fraser! rdcu.be/d1Phk
rdcu.be
Bactericidal antibiotic treatment induces damaging inflammation via TLR9 sensing of bacterial DNA
Nature Communications - The immunologic differences induced by bactericidal versus bacteriostatic antibiotics remain unclear. Gross et al. show that, in contrast to static antibiotics, cidal...
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ISB @isbscience.org · 02/12/2024
ISB Associate Professor Dr. Wei Wei has developed a promising new companion diagnostic tool called MetaboCore to help physicians quickly select the most effective systemic therapy for each cancer patient. Learn more: isbscience.org/news/2024/11...
isbscience.org
ISB-Developed MetaboCore Offers Precision Cancer Care Faster Than Ever
ISB's MetaboCore is a diagnostic tool that can help physicians quickly select the most effective systemic therapy for each cancer patient.
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Reposted by Sid Venkatesh
Neel Shah @nshahlab.bsky.social · 28/11/2024
This job has so many ups and downs, but one constant that I’m always thankful for is this creative, hard-working, supportive group (they support me, too!!). I’m also thankful for all the awesome ideas and cool data they generate, which keep us all motivated and stimulated and make this so much fun!
Shah lab photo outside of Havemeyer Hall. Left to right: Jason, Minhee, Zijing, Yethmie, Loren, Katherine, Devon, Neel, Cassie, Andrew, Allyson, Anne, Anya
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Sid Venkatesh @flash-point.bsky.social · 27/11/2024
Innovative and inspiring biochemistry from Joe Luna @virologistjoe.bsky.social and colleagues that combines CLIP with proximity labeling to reveal RNA:RBP interactions at subcellular resolution! Congratulations for your first paper as a corresponding author ♥️ rnajournal.cshlp.org/content/30/7...
rnajournal.cshlp.org
Mapping RNA–protein interactions with subcellular resolution using colocalization CLIP
A monthly journal publishing high-quality, peer-reviewed research on all topics related to RNA and its metabolism in all organisms
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Reposted by Sid Venkatesh
colinhillucc.bsky.social @colinhillucc.bsky.social · 26/11/2024
First post on a lovely story from the lab that shows that Faecalibacterium prausnitzii can package its own genome in bite-size segments in phage-like capsids www.biorxiv.org/content/10.1...
biorxiv.org
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Elaine Hsiao @pipethero.bsky.social · 16/02/2024
Delighted to share work by Kristie Yu, Celine Son, & co showing that selective fructan metabolism by the gut microbiome can contribute to host associative learning of dietary preference, even when it comes to choosing between diets with the same perceptual salience (and macronutrient composition!)
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Joseph Luna @virologistjoe.bsky.social · 25/11/2024
Some really beautiful biochemistry here. Seeing one dalton shifts to pinpoint how an enzyme from a nutrition-therapy-linked microbe works must be gratifying. Basic biochemistry lighting the way on an important problem. Congrats to my buddy Sid (@flash-point.bsky.social‬) and team on this one!
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Sid Venkatesh @flash-point.bsky.social · 26/11/2024
Co-varying coffee-derived metabolites are associated with L. asaccharolyticus! A cool paper by multiple luminaries in the field that set the stage for causal roles. Accompanied by a commanding News & Views piece by Nate McNulty@npmcnulty.bsky.social and colleagues. www.nature.com/articles/s41...
nature.com
Coffee consumption is associated with intestinal Lawsonibacter asaccharolyticus abundance and prevalence across multiple cohorts - Nature Microbiology
Coffee consumption is associated with the presence and abundance of a specific member of the human gut microbiome, Lawsonibacter asaccharolyticus, and changes to the plasma metabolome.
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Sid Venkatesh @flash-point.bsky.social · 25/11/2024
Mulling over a preprint from @nshahlab.bsky.social and colleagues on deep mutational scanning to yield insights into activity and regulation of the tyrosine phosphatase SHP2, as well as uncharacterized clinical variants. Beautiful work! ❤️ www.biorxiv.org/content/10.1...
biorxiv.org
Deep mutational scanning of a multi-domain signaling protein reveals mechanisms of regulation and pathogenicity
Multi-domain signaling enzymes are often regulated through extensive inter-domain interactions, and disruption of inter-domain interfaces by mutations can lead to aberrant signaling and diseases. For ...
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Reposted by Sid Venkatesh
ISB @isbscience.org · 22/11/2024
We are elated for @isbsci.bsky.social Assistant Professor Dr. Sid Venkatesh, co-first author of a paper in Science. isbscience.org/news/2024/11...
isbscience.org
Sid Venkatesh Publishes Co-First Authored Paper in Science
Dr. Sid Venkatesh, who joined ISB's faculty in 2023, is the co-first author of a paper in the journal Science.
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Sid Venkatesh @flash-point.bsky.social · 25/11/2024
I read this work from @ramlabuw.bsky.social and colleagues about splicing of IFN-gamma transcripts being regulated by IL-2! Interesting and neat idea... www.embopress.org/doi/full/10....
embopress.org
Interleukin-2-mediated NF-κB-dependent mRNA splicing modulates interferon gamma protein production | EMBO reports
imageimageIL-2 stimulation post-transcriptionally enhances splicing of IFNG mRNA in NK cells. Further, NF-κB signaling downstream of the IL-2 receptor is required for IFNG mRNA processing. IL-12 and ...
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Sid Venkatesh @flash-point.bsky.social · 25/11/2024
Intriguing paper linking bacterial strains (L. reuteri) and corticosterone release in a circadian rhythm-dependent manner from @jfcryan.bsky.social and colleagues. Kudos for the Zeitgeber time experiments! On to L. reuteri-encoded molecules that mediate these effects... www.cell.com/cell-metabol...
cell.com
Gut microbiota regulates stress responsivity via the circadian system
Gut microbes are known to modulate stress responsivity and behavior. Tofani et al. demonstrate that such modulations occur via the circadian system. The oscillations in gut microbiota composition regu...
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Sid Venkatesh @flash-point.bsky.social · 25/11/2024
Heart warming stuff from UW’s Microbial Interactions and Microbiome Center (mim_c) helmed by Drs. Joseph Mougous and Kyle Asfahl! Article by Neuroscience PhD candidate Monica Tschang. mimcuw.org/newsevents/a...
mimcuw.org
A gut microbial enzyme that impacts host signaling in undernourished children — Microbial Interactions & Microbiome Center
Dr. Siddarth Venkatesh, now at the Institute for Systems Biology in Seattle, previously studied the gut microbiome's impact on childhood undernutrition and the therapeutic potential of microbiota-dire...
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Sid Venkatesh @flash-point.bsky.social · 25/11/2024
Last month, my co-first author, Dr. Jiye Cheng and I reported the identification of a gut microbial enzyme that impacts satiety-related signaling pathways in undernourished children treated with a microbiota-directed complementary food. www.science.org/doi/10.1126/...
science.org
A human gut Faecalibacterium prausnitzii fatty acid amide hydrolase
Undernutrition in Bangladeshi children is associated with disruption of postnatal gut microbiota assembly; compared with standard therapy, a microbiota-directed complementary food (MDCF) substantially...
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Sid Venkatesh @flash-point.bsky.social · 25/11/2024
Happy to join this community! Excited to learn and discuss science with y'all.
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