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Fidel Ramírez-Amador

@fidelormz.bsky.social
73 followers 87 following 13 posts

Postdoctoral researcher at SYNMIKRO (Uni-Marburg)

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Reposted by Fidel Ramírez-Amador
Evgenii Protasov @evgenii-protasov.bsky.social · 15/09/2026
Expanding the substrate range of methanogenesis: thermophilic methanogenic Archaeoglobi produce methane from long-chain fatty acids 🤓🧫🔥 #methanogens #methane #archaea #MicroSky #ArchaeaSky @natmicrobiol.nature.com www.nature.com/articles/s41...
nature.com
Evidence of direct methane production from long-chain fatty acids by thermophilic Archaeoglobi - Nature Microbiology
An enrichment culture from hot spring sediments in China suggests that Ca. M. sphaerolipidus uses a suite of metabolic pathways to convert long-chain fatty acids such as oleic acid to methane, a proce...
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Reposted by Fidel Ramírez-Amador
bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 12/09/2026
Coupling Stickland fermentation with reverse β-oxidation represents a new mode of medium-chain carboxylate production www.biorxiv.org/content/10.64898/20…
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 19/08/2026
Powering methanogenesis from fatty acids by a twin-heme-mediated reverse redox-loop www.biorxiv.org/content/10.64898/20…
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Evgenii Protasov @evgenii-protasov.bsky.social · 09/08/2026
Assessing transporter systems of methanogens to boost archaea biotechnology #microbiology #biotechnology #methanogens #archaea #MicroSky www.sciencedirect.com/science/arti...
sciencedirect.com
Assessing transporter systems of methanogens to boost archaea biotechnology
Methanogenic archaea (methanogens) are key drivers of global carbon cycling and biomethane production, thriving in diverse anaerobic environments thro…
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Evgenii Protasov @evgenii-protasov.bsky.social · 10/08/2026
Microbial metabolism: Reactivating the molecular motor of the biological methane generator #methane #methanogens #biochemistry #MicroSky @currentbiology.bsky.social www.cell.com/current-biol...
cell.com
Microbial metabolism: Reactivating the molecular motor of the biological methane generator
The methane-generating enzyme from methanogenic archaea must be reactivated via a dedicated system. New molecular insights demonstrate that a key component of the reactivation machinery is redox sensi...
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Reposted by Fidel Ramírez-Amador
Evgenii Protasov @evgenii-protasov.bsky.social · 07/08/2026
Reconstructing ancient protein alphabets: what can we truly infer? #genetics #proteins #evolution www.sciencedirect.com/science/arti...
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Schuller Jan @schullerjm.bsky.social · 21/07/2026
We currently have an opening for a PhD position in the lab. If you are interested in pursuing some serious structural biology of photosynthetic and chloroplast processes please apply. Prerequisite is previous experience in cryoEM and/or phototrophs. stellenangebote.uni-marburg.de/jobposting/2...
stellenangebote.uni-marburg.de
Doctoral and Postdoctoral Researcher Positions in the Cluster of Excellence ‘Microbes for Climate’
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Evgenii Protasov @evgenii-protasov.bsky.social · 27/07/2026
Component A2 is a redox-sensitive archaeal ATPase activated by methyl-coenzyme M reductase #methanogenesis #methanogens #methane @currentbiology.bsky.social www.sciencedirect.com/science/arti...
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Sophia Paul @sophia-pa.bsky.social · 08/07/2026
Excited to share my paper! 🥳 Today in #Nature we reveal an 8 MDa Hdr electron bifurcating super-assembly in class I methanogens that couples the first and last steps of hydrogenotrophic methanogenesis. A lineage-specific adaptation to anaerobic niches. www.nature.com/articles/s41...
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Sven T. Stripp @stripplab.bsky.social · 06/07/2026
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Gyana Prakash Mahapatra @gyanaprakash.bsky.social · 27/06/2026
Excited to share our new preprint! How does the cyanobacterial hydrogenase HoxEFUYH drive photosynthetic H₂ production? Using #cryoEM, biochemistry, FTIR and EPR spectroscopy, we reveal its molecular mechanism, including the basis of electron bifurcation/confurcation. www.biorxiv.org/content/10.6...
biorxiv.org
Electron confurcation drives photosynthetic H2 production in cyanobacteria
Cyanobacteria are major contributors to global photosynthesis and are intensively studied for sustainable green H2 production. Central to this process is the bidirectional [NiFe]-hydrogenase HoxEFUYH,...
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Reposted by Fidel Ramírez-Amador
Ribbe Hu Labs @ribbehulab.bsky.social · 28/04/2026
onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
Minimal ATP‐Independent N2‐Reducing Systems Defined by L‐Cluster‐Bound Nitrogenase Assembly Platforms
Association of the L-cluster with the nitrogenase assembly proteins NifEN (NifENL) or NifB (NifBL) intrinsically endows these proteins with N2-reducing activity, enabling in vitro N2-reduction by Nif....
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Reposted by Fidel Ramírez-Amador
Tomas Pascoa @tomaspascoa.bsky.social · 14/04/2026
1/ Excited to share our preprint! 🥳 Degradation of aromatic compounds, including BTEX pollutants, requires highly endergonic aromatic ring reduction. Using #cryoEM and in situ #cryoET, we show how BCRII couples electron bifurcation modules in one giant redox machine www.biorxiv.org/content/10.6...
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Anuj @rnfr2d2.bsky.social · 14/04/2026
How do “LEGO-like” electron-bifurcating modules combine to drive degradation in BTEX-contaminated ecosystems? Check out our latest preprint, where we use cryo-EM and cryo-ET to reveal how the 1 MDa BCRII complex powers extremely endergonic aromatic ring reduction. www.biorxiv.org/content/10.6...
biorxiv.org
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Trends in Microbiology @cp-trendsmicrobiol.bsky.social · 11/04/2026
Breathing both ways: simultaneous aerobic–anaerobic respiration in microbes
dlvr.it
Breathing both ways: simultaneous aerobic–anaerobic respiration in microbes
Microorganisms have historically been classified as obligate aerobes or anaerobes, facultative anaerobes, or microaerophiles, reflecting differences in respiratory strategies dictated by the use of oxygen and alternative electron acceptors. Recent discoveries provide evidence that a deviant strategy, the concurrent reduction of oxygen and other electron acceptors, is more widespread than previously thought. Such co-respiring bacteria employ hybrid metabolic strategies that extend models of electron acceptor use. In this review, we investigate mechanisms of co-respiration, summarize the biochemical components enabling parallel electron flow, and discuss the regulation of aerobic and anaerobic pathways under changing redox conditions. We also examine the evolutionary context of these strategies during the rise of oxygen on early Earth and outline experimental approaches needed to resolve co-respiration in individual cells.
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Nature Catalysis @natcatal.nature.com · 26/03/2026
New online! Gating the nitrogenase cofactor
dlvr.it
Gating the nitrogenase cofactor
Nature Catalysis, Published online: 26 March 2026; doi:10.1038/s41929-026-01498-8Biological nitrogen fixation is vital for sustainable agriculture, yet nitrogenase engineering is hindered by limited insight into their essential metallocluster cofactor assembly and transfer. Here, by capturing the nitrogenase biosynthetic component NifEN in multiple structural states, a tunnel-and-switch mechanism that coordinates receipt, maturation and delivery of the FeMo-cofactor precursor is revealed.
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Gyana Prakash Mahapatra @gyanaprakash.bsky.social · 29/03/2026
Excited to share our new paper in @natcomms.nature.com ! Here, we present the cryo-EM structure of the Cytc₆:PSI complex from Chlamydomonas reinhardtii👇 www.nature.com/articles/s41...
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Anuj @rnfr2d2.bsky.social · 27/03/2026
I am truly honoured and delighted to receive the GBM #PhDAward from @gbmev.bsky.social Grateful to @schullerjm.bsky.social and Prof. Volker Müller for their continuous support and guidance! www.uni-marburg.de/en/prfolder-...
uni-marburg.de
GBM PhD Prize 2026 awarded to Marburg Researcher Anuj Kumar
Award honors outstanding dissertation on CO₂ fixation and energy conservation in microorganisms
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Sven T. Stripp @stripplab.bsky.social · 24/03/2026
Carbonic anhydrase catalyses the interconversion of CO2 and HCO3- and helps increasing the net-CO2 concentration inside cells. Why? CO2-reducing enzymes like RuBisCO are notoriously slow and ineffective. However, import of HCO3- is typically coupled to ATP consumption...
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Evgenii Protasov @evgenii-protasov.bsky.social · 29/01/2026
Genus-specific remodeling of carbon and energy metabolism facilitates acetoclastic methanogenesis in Methanosarcina spp. and Methanothrix spp. #methanogens #methane #archaea #MicroSky #ArchaeaSky @asm.org journals.asm.org/doi/full/10....
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The Banfield Lab @banfieldlab.bsky.social · 23/01/2026
🚨 New pre-print alert! Jumbo circular extrachromosomal elements of methane-oxidizing archaea with variably extensive metabolic and defense gene repertoires www.biorxiv.org/content/10.6...
biorxiv.org
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Cameron Thrash @jcamthrash.bsky.social · 09/01/2026
Molecular evolution of the Wood-Ljungdahl pathway and the reductive glycine pathway in Desulfobacterota www.frontiersin.org/journals/mic... #jcampubs
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Fidel Ramírez-Amador @fidelormz.bsky.social · 08/12/2025
Last Friday was the defense of my PhD thesis entitled "Structural basis of anaerobic enzymes mediated by noncanonical metalloclusters" after 4 yrs at the @synmikro.bsky.social 🎓🎓 Big thanks to my supervisor @schullerjm.bsky.social and the whole Schuller lab for their continuous and massive support!
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Mike Jetten @msmjetten.bsky.social · 09/11/2025
Nickel: Geochemistry, biochemistry and its role in chemical and biological evolutions www.sciencedirect.com/science/arti...
sciencedirect.com
Nickel: Geochemistry, biochemistry and its role in chemical and biological evolutions
Nickel is a versatile element that plays critical roles in Earth's geological and biological evolution, from the depths of the magmatic mantle to the …
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Evgenii Protasov @evgenii-protasov.bsky.social · 02/11/2025
Carbon-monoxide-driven bioethanol production operates through a tungsten-dependent catalyst #BioEthanol #CarbonMonoxide www.nature.com/articles/s41...
nature.com
Carbon-monoxide-driven bioethanol production operates through a tungsten-dependent catalyst - Nature Chemical Biology
Microbial alcohol production from waste gases could enable sustainable carbon cycling. Now, the tungsten-dependent aldehyde:ferredoxin oxidoreductase from the gas-converting bacterium Clostridium auto...
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Johannes Rebelein @rebeleinlab.bsky.social · 23/10/2025
Our latest work on the nitrogenase-like methylthio-alkane reductase, which specifically reduces reduces carbon-sulfide bonds is now out @natcatal.nature.com: doi.org/10.1038/s419.... We find for the first time large #nitrogenase metalloclusters (P- and L-cluster) outside nitrogenases.
doi.org
Methylthio-alkane reductases use nitrogenase metalloclusters for carbon–sulfur bond cleavage - Nature Catalysis
Methylthio-alkane reductases are recently discovered enzymes that can produce methanethiol and small hydrocarbons from methylated sulfur compounds. Now the cryo-EM structure of a methylthio-alkane red...
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Sven T. Stripp @stripplab.bsky.social · 08/10/2025
Happy to share our latest review article, this time joining forces with 📌Seigo Shima, 📌James Birrell, 📌Giorgio Caserta, and 📌Oli Lenz. We wrote about hydrogenase catalysis because this is what we do best 😎 doi.org/10.1002/9783...
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Mike Jetten @msmjetten.bsky.social · 21/09/2025
#Methanosarcina acetivorans requires methanol:coenzyme M methyltransferases for #ethane formation from ethanol #methane link.springer.com/article/10.1...
link.springer.com
Methanosarcina acetivorans requires methanol:coenzyme M methyltransferases for ethane formation from ethanol - Antonie van Leeuwenhoek
Corrinoid-dependent enzymes either catalyze methyltransfer reactions, or they generate substrate radicals using adenosylcobalamin for subsequent rearrangement reactions. The corrinoid-dependent methyl...
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Evgenii Protasov @evgenii-protasov.bsky.social · 28/09/2025
New frontiers in short-chain alkyl-coenzyme M reductases #methanogenesis #methane #microbiology www.sciencedirect.com/science/arti...
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 17/09/2025
Carbon monoxide metabolism in freshwater anaerobic methanotrophic archaea www.biorxiv.org/content/10.1101/202…
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Evgenii Protasov @evgenii-protasov.bsky.social · 09/09/2025
Atomic resolution structures of the methane-activating enzyme in anaerobic methanotrophy reveal extensive post-translational modifications #microbiology #methane #archaea @natcomms.nature.com www.nature.com/articles/s41...
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James Lingford @jameslingford.bsky.social · 02/09/2025
Fantastic review on methodological developments in protein structural phylogenetics academic.oup.com/gbe/article/...
academic.oup.com
Protein Structural Phylogenetics
Abstract. Protein structural phylogenetics is an interdisciplinary branch of molecular evolution that (i) uses 3D structural data to trace evolutionary his
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Sven T. Stripp @stripplab.bsky.social · 21/08/2025
Stepwise and reversible assembly of [2Fe–2S] rhombs to [8Fe–8S] clusters (Mougel et al. via @natchem.nature.com) www.nature.com/articles/s41...
nature.com
Stepwise and reversible assembly of [2Fe–2S] rhombs to [8Fe–8S] clusters and their topological interconversions - Nature Chemistry
Elucidating the nature of the metallocofactors in nitrogenase enzymes, and preparing synthetic analogues of these clusters, is a classic target for bioinorganic chemists. Now the transformation of [Fe...
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Chris Greening @greening.bsky.social · 08/08/2025
1/3 Electricity from air! In the top journal Nano Energy today, we report the first fuel cell that makes power from air alone. We achieved this by using the enzyme Huc to oxidize ambient hydrogen. This results in a continuous low-level power from air and higher outputs with industrial waste gases.
sciencedirect.com
Nanoengineered bioanode with oxygen-insensitive hydrogenase for sustainable energy harvesting from atmospheric hydrogen and waste gases
Enzymatic biofuel cells (EBFCs) utilizing hydrogenases to oxidize hydrogen offer a sustainable approach to energy conservation. However, the oxygen se…
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John Helmann @johnhelmann.bsky.social · 28/07/2025
Metal ions are universally required for life, and many of the foundational principles of metal homeostasis have emerged from studies of microbial systems. In this review, I provide a introductory overview targeted to those new to the field. #MicroSky #Metals rdcu.be/eycU2
rdcu.be
Microbial metal physiology: ions to ecosystems
Nature Reviews Microbiology - Metal ions are required for all cells, and their homeostasis relies on ancient mechanisms that facilitate their import, distribution and storage. In this Review,...
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Evgenii Protasov @evgenii-protasov.bsky.social · 03/07/2025
Our new study shows how nickel limitation changes electron flow in methanogens. @nature.com #methanogens #methane #archaea www.nature.com/articles/s41...
nature.com
Electron flow in hydrogenotrophic methanogens under nickel limitation - Nature
Two distantly related methanogens shift the methanogenic pathway under nickel limitation, suggesting that methanogens adapt to changing bioavailability of nickel by rerouting electron flow between two...
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georghochberg.bsky.social @georghochberg.bsky.social · 11/06/2025
New paper from the lab from Sriram Garg in my group. We introduce a general substitution matrix for structural phylogenetics. I think this is a big deal, so read on below if you think deep history is important. academic.oup.com/mbe/advance-...
academic.oup.com
A general substitution matrix for structural phylogenetics.
Abstract. Sequence-based maximum likelihood (ML) phylogenetics is a widely used method for inferring evolutionary relationships, which has illuminated the
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Schuller Jan @schullerjm.bsky.social · 04/06/2025
Proud to present the lab's latest work. The full structure of the sodium translocating methyltransferase (Mtr) bound to a small oxygen-responsive small protein MtrI. Work by Tristan and together with @schmitzstreitslab.bsky.social . www.biorxiv.org/content/10.1101/2025.06.02.657420v1
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Sven T. Stripp @stripplab.bsky.social · 04/06/2025
CLUSTERING FOR METHANE Nice write-up @natcatal.nature.com of our recent article on MCR activation 🙏🏻 www.nature.com/articles/s41...
nature.com
Clustering for methane - Nature Catalysis
Nature Catalysis - Clustering for methane
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Johannes Rebelein @rebeleinlab.bsky.social · 01/06/2025
Leveraging spectroscopic and structural approaches we obtained new insights into the role of #ferredoxins in N2 fixation. Just published in Chemistry – A European Journal: doi.org/10.1002/chem...! Great work by Holly Addison. Fantastic collaboration with Antonio Pierik on the EPR characterization.
doi.org
Two Key Ferredoxins for Nitrogen Fixation Have Different Specificities and Biophysical Properties
Two ferredoxins, FdC and FdN, are collectively essential for the process of nitrogen fixation by the iron nitrogenase in R. capsulatus. We explore the biophysical factors, through spectroscopic and s....
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Schuller Jan @schullerjm.bsky.social · 12/05/2025
Happy to present the lab latest work, today from the green-side. The ultimate PSII assembly intermediate that directly precedes incorporation of the Mn4O5Ca cluster and formation of the OEC. Psb32 binds to PsbV, challenging the assumption the extrinsic subunits all associate spontaneously in-vivo.
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Duncan Kountz @dkountz.bsky.social · 02/05/2025
My lab mates and their collaborators have a really cool paper you should check out: the structure of catalytically active (Ni(I)) methyl-coM reductase: www.biorxiv.org/content/10.1...
biorxiv.org
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Sven T. Stripp @stripplab.bsky.social · 17/04/2025
Short press piece @unipotsdam.bsky.social about our new article @nature.com on methyl coenzyme M reductase (MCR) www.uni-potsdam.de/en/headlines...
uni-potsdam.de
Early life – Enzyme for biological methane production decoded
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Technische Universität Berlin @tuberlin.bsky.social · 25/04/2025
🧪 Durchbruch in der biochemischen Grundlagenforschung mit zentraler Bedeutung für #Energie & #Klima: Ein Team der @unimarburg.bsky.social & der #TUBerlin/ @unisyscat.bsky.social hat erstmals den Aktivierungsmechanismus des Enzyms MCR aufgeklärt – zentral für die biologische Produktion von #Methan. 👇
tu.berlin
Durchbruch in der Methan-Forschung: Aktivierungsmechanismus des Methan-produzierenden Enzyms entschlüsselt
„Nature“-Publikation offenbart die evolutionäre Verbindung zwischen zwei fundamentalen biologischen Prozessen
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Fidel Ramírez-Amador @fidelormz.bsky.social · 16/04/2025
I'm truly excited to announce our new publication in @nature.com unraveling a central picture of the Methyl-coenzyme M reductase (MCR) activation machinery and it's strong ATP dependency - kudos to @rnfr2d2.bsky.social for the fantastic illustration! LINK: www.nature.com/articles/s41...
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