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Edward Pimentel

@edwardpimentel.bsky.social
68 followers 168 following 23 posts

Stanford Postdoc (Soh Lab) 🧬 UW-Madison PhD (Martell Group) 🧪 Loves Chemistry, Books, Bread, Bikes and Plants. 🇺🇸 🇧🇦 🇷🇴 🇳🇱 🇸🇩 🇧🇪

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Reposted by Edward Pimentel
Kimberly Beatty @beattylab.bsky.social · 28/09/2026
Please share: OHSU is hiring an Assistant Prof. in the Dept. of Chemical Physiology & Biochemistry. We are looking for a chemical biologist who will apply novel chemical tools in physiological systems. Apply online: www.ohsu.edu/human-resour... (Job # 2026-41667).
ohsu.edu
OHSU Faculty, Physician and Academic Jobs in Oregon
Find higher education faculty, physician and research jobs and build your academic health career at OHSU in Portland, Oregon.
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Reposted by Edward Pimentel
Ryan Hili @ryanhili.bsky.social · 25/09/2026
Our new preprint is on ChemRxiv. We combine mRNA display with DNA-encoded chemistry, using two successive residue-selective modifications recorded by DNA barcodes. The approach generated ~20 million nominal chemical structures and was demonstrated by selection against CAIX.
chemrxiv.org
DNA-Encoded Chemical Diversification of mRNA Display Libraries | ChemRxiv
mRNA display can survey vast peptide populations, but the chemical diversity available to selection remains largely constrained by translation. DNA-encoded libraries possess the complementary advantag...
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Edward Pimentel @edwardpimentel.bsky.social · 05/08/2026
Polizzi lab preprint just dropped! Big implications for the future of small molecule sensing: Jeffrey designed de novo proteins with conformational changes upon binding that can be read out optically! Read it now on bioRxiv: www.biorxiv.org/content/10.6...
biorxiv.org
De novo design of small-molecule-induced conformational change
Many biological proteins function by changing shape upon small-molecule binding. Here, we present a general strategy for designing de novo proteins that undergo small-molecule-induced conformational c...
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Reposted by Edward Pimentel
WARF (Wisconsin Alumni Research Foundation) @warfnews.bsky.social · 30/07/2026
We're looking for a technology transfer intern to: ✔️ Assist with licensing & IP projects ✔️ Participate in outreach activities ✔️ Conduct market research Visit our careers page to learn more and apply! #NowHiring
warf.org
WARF Careers | Wisconsin Alumni Research Foundation
WARF helps steward the cycle of innovation with a team that includes intellectual property, commercialization, investment and engagement professionals.
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Edward Pimentel @edwardpimentel.bsky.social · 30/07/2026
Fresh from the Soh lab: using a high-throughput aptamer screening platform to design non-intuitive split aptamers that challenge the traditional approach to split design. Bonus: this Lettuce won't give you cyclosporiasis. 🥬 😂 Read now in ACS Sensors: pubs.acs.org/ascefj/artic...
pubs.acs.org
A Rationally Designed Split Lettuce Aptamer Based on Large-Scale Mutational Analysis
AbstractSplit-aptamer biosensors offer exceptionally low background by assembling only in the presence of a target analyte; however, their performance is f
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Reposted by Edward Pimentel
Admirable Women @admirablewomen.bsky.social · 16/04/2026
Biochemist Marie M. Daly (b. #OTD in 1921) was the first Black woman to earn a Ph.D. in #chemistry in the US (Columbia 1947). Overcoming the dual hurdles of racial & gender bias, her pioneering studies included cholesterol’s role in heart disease, protein synthesis, and nucleic acids. #WomenInSTEM
This black-and-white photograph captures Marie Maynard Daly (1921–2003), the trailblazing American biochemist who became the first Black woman to earn a Ph.D. in chemistry in the United States (Columbia University, 1947), at work in her laboratory. Centered in the frame, Daly leans slightly forward with quiet intensity, her gaze directed downward in deep concentration at the scientific glassware she holds with practiced precision: a slender glass pipette in her right hand and a small test tube or vial in her left, as if carefully transferring a liquid during an experiment. She wears a crisp white lab coat unbuttoned at the front, revealing a dark dress or skirt beneath and a boldly contrasting scarf tied neatly at her neck; her short, wavy dark hair is neatly styled, and a pen peeks from her coat pocket. The mid-20th-century laboratory setting envelops her with authentic period detail—white tiled walls, wooden cabinets with glass doors stacked high with books and papers, a cluttered wooden desk, a tall stool, a visible refrigerator, scattered beakers and equipment on the bench, and even a fire extinguisher mounted on the wall—creating a sense of purposeful, hands-on scientific discovery. The composition places Daly as the clear focal point, her figure framed by the ordered chaos of research tools and notes, conveying a mood of focused dedication, intellectual rigor, and quiet empowerment. This historic image endures as a powerful symbol of Daly’s groundbreaking legacy: her pioneering studies on cholesterol’s role in heart disease, protein synthesis, and nucleic acids helped shape modern biochemistry, while her lifelong advocacy opened doors for women and people of color in STEM fields.
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Reposted by Edward Pimentel
Admirable Women @admirablewomen.bsky.social · 16/04/2026
Chemist & X-ray crystallographer Rosalind Franklin's meticulous research was instrumental in uncovering DNA's molecular structure. Most famous for her role in the DNA double helix discovery, her work also revolutionized our understanding of viruses & coal. Died #OTD in 1958, age 37. #WomenInSTEM
This black-and-white studio portrait photograph captures Rosalind Elsie Franklin, the brilliant British chemist and X-ray crystallographer whose meticulous research produced Photograph 51—the iconic X-ray diffraction image that revealed DNA’s double-helix structure and proved pivotal to the 1953 Watson-Crick model of the molecule. Shown in a close-up, three-quarter view from the shoulders up, Franklin appears in her late twenties or early thirties, her dark, wavy hair neatly styled and swept back from her face. She wears a simple, dark collared blouse or shirt with a crisp, professional appearance that reflects the understated elegance typical of mid-20th-century scientific women. Her expression is calm and intensely focused: direct gaze slightly off-camera to the viewer’s left, lips gently closed in a subtle, knowing half-smile, conveying quiet confidence, intellectual depth, and quiet determination. The plain, softly lit studio background with its neutral gradient emphasizes her face and upper torso, creating an intimate, timeless composition that places her poised presence at the absolute center.
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Edward Pimentel @edwardpimentel.bsky.social · 07/04/2026
New Martell Group paper alert! www.sciencedirect.com/science/arti... Cool work by Sifei Fang evolving APEX2 for proximity labeling probes with higher redox potentials! Amazing to see this project published.
sciencedirect.com
Directed evolution of APOX for proximity labeling using phenols with high redox potentials
Proximity labeling (PL) can identify endogenous proteins in specific subcellular regions. APEX2 (enhanced ascorbate peroxidase 2) enables PL with high…
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Reposted by Edward Pimentel
ACS BIOL: Division of Biochemistry and Chemical Biology @acsbiol.bsky.social · 28/03/2026
It's that time of year again! #ACSFall2026 abstracts are due this Monday, March 30! Submit to the #ACSBIOL Division here: acsnm272.abstractcentral.com
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Edward Pimentel @edwardpimentel.bsky.social · 24/03/2026
That unbalanced centrifuge in Project Hail Mary #chemchat
media.tenor.com
a man in a suit and tie is standing next to another man in a yellow shirt and tie .
ALT: a man in a suit and tie is standing next to another man in a yellow shirt and tie .
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Edward Pimentel @edwardpimentel.bsky.social · 20/03/2026
Honored to have been selected again for the 2026 CAS Future Leaders Top 100 initiative - congrats to the 2026 CAS Future Leaders awardees! Such a great program.
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Edward Pimentel @edwardpimentel.bsky.social · 20/03/2026
Amazing work by labmate, Liwei - DNA-encoded protein sequencing! Check out Stanford's write-up: news.stanford.edu/stories/2026... #chemchat
news.stanford.edu
Bioengineers develop novel method to read proteins
A “reverse translation” technique converts protein sequences into DNA, enabling unprecedented detection sensitivity.
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Reposted by Edward Pimentel
Jeremy Baskin @jeremybaskin.bsky.social · 15/02/2026
And save >80% on the cost by pooling 6 or more plasmids into a single sample using our free SAVEMONEY algorithm! elifesciences.org/articles/88794 colab.research.google.com/github/Masaa...
elifesciences.org
Barcode-free multiplex plasmid sequencing using Bayesian analysis and nanopore sequencing
SAVEMONEY is a computational tool that guides users to mix plasmids prior to nanopore sequencing, reducing the effective cost of whole-plasmid sequencing to below that of Sanger sequencing.
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Reposted by Edward Pimentel
Scott Bagley @bagphos.bsky.social · 31/01/2026
Follow @inprep.bsky.social for the best #ScienceSatire anywhere!
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Edward Pimentel @edwardpimentel.bsky.social · 26/01/2026
Amazing work by my former labmate, Ashley and collaborators in the @chembiobryan.bsky.social group!
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Reposted by Edward Pimentel
Peter Carlton @petercarlton.bsky.social · 21/01/2026
Did you know that narratives can generate interest in your research? @storycollider.bsky.social provides #CASFutureLeaders with skills for effective storytelling. If you're a Ph.D. student or postdoc, apply for the 2026 program by January 25. www.cas.org/about/future... youtu.be/3J9LvBqM8XY?...
youtu.be
How Scientists Learn to Tell Their Research Story | CAS Future Leaders™
YouTube video by CAS, a division of the American Chemical Society
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Reposted by Edward Pimentel
C&EN (Chemical & Engineering News) @cenmag.bsky.social · 20/01/2026
Researchers have developed a light-driven catalytic method to hydrolyze furans, offering a more efficient way to exploit them in biorefineries. cen.acs.org/synthesis/gr... #chemsky 🧪
cen.acs.org
Lighting a better path for biobased furans
Photocatalytic hydrolysis offers a shortcut for renewable chemicals
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Reposted by Edward Pimentel
Chemistry World @chemistryworld.com · 20/01/2026
Dissolved in poly(alpha-olefin) oil, the reagents don’t ignite or smoke in air, making them easier to handle and less prone to degradation on storage, while maintaining performance across a range of reaction types.
chemistryworld.com
New reagents take the burn out of butyllithium
Merck KGaA's non-pyrophoric butyllithium in poly(α-olefin) oil make BuLi stable to air and water
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Edward Pimentel @edwardpimentel.bsky.social · 20/01/2026
Lucky manufacturing glitch of the week: finding 0.5 mL centrifuge tubes mixed in with the 1.5 mL tubes we ordered. It's like finding the plastic baby figurine in your slice of the king cake! @eppendorf.bsky.social #chemchat 🧪
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Edward Pimentel @edwardpimentel.bsky.social · 09/01/2026
Amazing work from the @aliceyting.bsky.social lab! Especially cool to see the functional effect of the conformational biasing on enzyme activity. www.science.org/doi/10.1126/...
science.org
Computational design of conformation-biasing mutations to alter protein functions
Conformational biasing (CB) is a rapid and streamlined computational method that uses contrastive scoring by inverse folding models to predict protein variants biased toward desired conformational sta...
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Reposted by Edward Pimentel
Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 06/01/2026
Cool new chemistry for covalent ligand development targeting arginine 👏
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Edward Pimentel @edwardpimentel.bsky.social · 17/12/2025
Very cool work in this preprint from the Krishnan lab!
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Edward Pimentel @edwardpimentel.bsky.social · 02/12/2025
Amazing to see two of my Soh Lab teammates on the #ForbesUnder30 Science list today: Congratulations Yihang and Yahao! www.forbes.com/30-under-30/...
forbes.com
Forbes 30 Under 30 2025: Science
Inventing the future from the atom up
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Edward Pimentel @edwardpimentel.bsky.social · 01/12/2025
This is an amazing program. Check it out and apply!
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Reposted by Edward Pimentel
Jeff Martell @jeffmartell.bsky.social · 13/11/2025
Check out our review on DNA-scaffolded catalysis! This link provides free full text access until the end of 2025: authors.elsevier.com/a/1m43W9CpcY.... Big thanks to co-authors @edwardpimentel.bsky.social , Ashley Ogorek, @ethan-hartman-125.bsky.social , and Caleb Cox
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Edward Pimentel @edwardpimentel.bsky.social · 09/11/2025
Our mini-review on DNA-scaffolded catalysis is out today in @cp-trendschem.bsky.social! It's an interesting look at this unique intersection of catalysis, DNA nanotechnology and supramolecular chemistry. Give it a read! #chemsky doi.org/10.1016/j.tr...
doi.org
Redirecting
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Edward Pimentel @edwardpimentel.bsky.social · 01/11/2025
Just stumbled across Orca Sciences' technical articles. Interesting reads! www.orcasciences.com/reading-diff...
orcasciences.com
Orca Sciences
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Edward Pimentel @edwardpimentel.bsky.social · 26/09/2025
Interesting article about RNA structure prediction - we're always wishing we had better structure prediction tools for aptamers, and this article sums up the challenges very neatly! www.owlposting.com/p/rna-struct...
owlposting.com
RNA structure prediction is hard. How much does that matter?
4.8k words, 22 minute reading time
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Reposted by Edward Pimentel
Jake Yeston @jakeyeston.bsky.social · 18/09/2025
In @science.org this week @zachwickens.bsky.social and collaborators find a way to do Z-selective elimination using thianthrenium chemistry in a versatile route to Z olefins. chemsky 🧪 www.science.org/doi/10.1126/...
science.org
Stereo-reversed E2 unlocks Z-selective C–H functionalization
The stereoselective functionalization of C–H bonds represents a central challenge in modern organic synthesis. Despite decades of innovation in C–H activation chemistry, methods for Z-selective functi...
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Reposted by Edward Pimentel
Chris Chang @christhechang.bsky.social · 16/09/2025
Happy to share our latest in @jacs.acspublications.org led by Xiao and @genlichem.bsky.social on a new activity-based sensing probe for Cu(I) using a fast alkyne-directed cleavage reaction to discover Mn-sensitized #cuproptosis as a novel type of metal-metal crosstalk! pubs.acs.org/doi/abs/10.1...
pubs.acs.org
An Alkyne-Directed Cleavage Approach for Activity-Based Cu(I) Sensing Reveals Manganese-Promoted Sensitization of Cuproptosis
Copper is an essential element for sustaining life. However, disruptions in copper homeostasis underpin disease, as illustrated by cuproptosis, an emerging form of cell death resulting from aberrant a...
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Edward Pimentel @edwardpimentel.bsky.social · 16/09/2025
New preprint from the Soh lab! Nice work by my labmate Haji - new highly specific steroid aptamers identified using our modified sequencer platform! These don't have the 3wj structure and promiscuity of previous aptamers - I've used it myself! #chemsky www.biorxiv.org/content/10.1...
biorxiv.org
Discovery of high-specificity DNA aptamers for progesterone using a high-throughput array platform
Aptamer-based biosensors offer several advantages for detecting small molecules, including chemical stability and compatibility with diverse sensing formats. However, developing highly specific DNA ap...
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Reposted by Edward Pimentel
C&EN (Chemical & Engineering News) @cenmag.bsky.social · 10/09/2025
#chemsky 🧪
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 09/09/2025
Great perspective by @dereklowe.bsky.social on recent advances in cell surface #glycoRNA biology, including new work from @raflynn5.bsky.social and collaborators identifying an immune silencing effect of N-glycans on activation of TLRs by Acp3U-RNA (www.nature.com/articles/s41...)
nature.com
RNA N-glycosylation enables immune evasion and homeostatic efferocytosis - Nature
N-glycans on glycoRNAs prevent innate immune sensing of endogenous small RNAs, and the natural mechanism they use demonstrates how glycoRNAs exist on the cell surface and in the endosomal network with...
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Edward Pimentel @edwardpimentel.bsky.social · 08/09/2025
Fascinating work by @philiplampkin.bsky.social from the Gellman lab about preorganization in bifunctional catalysts! Controls like the alkyl-tethered catalysts in this paper are important for assessing the role of the supramolecular scaffold, but rarely investigated. Give it a read!
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Nessa Carson @supersciencegrl.co.uk · 29/08/2025
A very apt Venn diagram (dunno original source)
Title: Data understanding
A Venn diagram with 2 circles that aren't even touching. 
One is labelled "data we have" and the other "data we need"
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Edward Pimentel @edwardpimentel.bsky.social · 29/08/2025
I loved reading about the Dickinson lab's masked acylating reagent approach to proximity labeling in Nature Chemistry last year (www.nature.com/articles/s41...), and was really excited when @jeffmartell.bsky.social and my labmate Ashley got involved. Check the pre-print out!
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Edward Pimentel @edwardpimentel.bsky.social · 22/08/2025
Cool grant program by ACS that supports graduate students whose Masters/PhD is being impacted by canceled grants: www.acs.org/funding/gran...
acs.org
ACS Graduate Student Success Grant - American Chemical Society
To support graduate students (M.S. and Ph.D.), within one year of degree completion, whose education and training were disrupted due to recent termination or cancellation of research grants. Funding w...
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Sarah McAnulty, Ph.D. @sarahmackattack.bsky.social · 07/08/2025
Scientists! @skypeascientist.bsky.social matches scientists with classrooms, libraries, & more for virtual Q&As! It's easy and fun! We are looking for 750 more volunteers by 8/15 If you're down to chat with 1-5 classrooms this semester, sign up here www.skypeascientist.com/sign-up.html
a canva graphic that says "How it works Step 1:  Go to SkypeAScientist.com
Step 2: Click “Sign Up” then “Scientist
              Sign Up Form”
Step 3: Tell us about yourself
Step 4: Get matched with a classroom
Step 5: Connect with the teacher
Step 6: Make a kid’s day 
isn't that great?
@SkypeAScientist"
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Edward Pimentel @edwardpimentel.bsky.social · 14/08/2025
Really proud to have been a part of this!
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Chemistry World @chemistryworld.com · 14/08/2025
A walk around your lab might reveal some true relics of the past. Derek Lowe asks which equipment will survive the test of time, and which may have to move over for something fancy and new – and makes some predictions of his own.
chemistryworld.com
‘Creative destruction’ in the chemistry lab
Some obsolete lab equipment is quickly replaced, while other items are stubbornly persistent. What modern tech will survive to the 2060s?
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Edward Pimentel @edwardpimentel.bsky.social · 13/08/2025
Really great article about teaching undergraduate chemistry the sets a higher bar for the "unknown puzzles" we all remember solving (some fondly, other not so much)! This authentic chemistry learning approach was part of what made being a TA at UW-Madison so great! doi.org/10.1021/acs....
doi.org
Spectroscopic Unknown Puzzles from Real Data─A More Authentic Pedagogical Approach with Epistemological Implications
We present example assessments featuring spectroscopic unknown puzzles, where the solution to the puzzle is the outcome of a known chemical reaction. These spectroscopic exercises engage students in a substantially more authentic manner than the conventional structure elucidation puzzles that are ubiquitous in organic chemistry instruction. Students use the same information available to practicing organic chemists, i.e., the chemicals added to the reaction vessel and information regarding the intended reaction outcome, to support their interpretation of GC-MS, IR, and NMR data. This centers the purpose of spectroscopy and spectrometry on understanding chemical phenomena, often chemical reactions, rather than on solving inauthentic unknown puzzles which are not connected to a chemical phenomenon. We anticipate that repeated use of spectroscopy and spectrometry in this manner will communicate to students why organic chemists highly value these techniques and how they are used to construct knowledge in organic chemistry.
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Nature Chemical Biology @natchembio.nature.com · 27/06/2025
Our July issue is live! www.nature.com/nchembio/vol... The cover image depicts a target protein bound to a high-affinity aptamer that gets enriched after a single selection round with multiple elution steps.
July cover featuring the UltraSelex method with the coverline - "Rapid discovery of high-affinity aptamers". The cover image depicts a target protein bound to a high-affinity aptamer that gets enriched after a single selection round with multiple elution steps.
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