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Dan Nomura

@dannomura.bsky.social
4.8K followers 6.2K following 87 posts

Professor of Chemical Biology and Molecular Therapeutics at UC Berkeley

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Dan Nomura @dannomura.bsky.social · 14/12/2025
Excited to highlight our latest bioRxiv led by grad student Zoe Duong and Qian Shao. We report a chemistry-centric, chemoproteomics-enabled strategy to discover non-degradative molecular glues for transcriptional rewiring.
🔗 www.biorxiv.org/content/10.6...
biorxiv.org
Discovery of Non-Degradative Covalent Molecular Glues for Transcriptional Reprogramming
Transcriptional reprogramming through induced proximity has emerged as a powerful strategy for modulating the expression of oncogenic and tumor-suppressive genes. Inspired by transcriptional reprogram...
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James Olzmann @olzmannlab.bsky.social · 01/12/2025
New preprint out! We show that PROTAC-induced ubiquitination can bypass canonical ERAD to degrade ER membrane proteins. Wonderful collaboration w/ @dannomura.bsky.social and huge credit to grad student superstar Sydney Tomlinson! www.biorxiv.org/content/10.1...
biorxiv.org
Induced ubiquitination bypasses canonical ERAD to drive ER protein degradation
Heterobifunctional proteolysis-targeting chimeras (PROTACs) have emerged as a powerful strategy to degrade disease-relevant proteins, enabling targeting of previously "undruggable" proteins. Current d...
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Dan Nomura @dannomura.bsky.social · 11/11/2025
I rarely get to give a research talk at my home institution! Looking forward to giving a talk about our latest research next Tuesday, November 18th, at 2 pm as part of the @innovativegenomics.bsky.social seminar series in Room 115 IGIB at UC Berkeley! innovativegenomics.org/events/semin...
innovativegenomics.org
Reimagining Druggability using Chemoproteomic Platforms
Reimagining Druggability using Chemoproteomic Platforms - Innovative Genomics Institute (IGI)
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Nature Reviews Drug Discovery @natrevdrugdiscov.nature.com · 04/11/2025
Induced proximity-based therapeutic modalities nature.com/articles/s41... rdcu.be/eOfBH This new Review by @dannomura.bsky.social et al. discusses the rapidly expanding landscape of therapeutic approaches based on inducing proximity between proteins, including targeted protein degraders and more
nature.com
Induced proximity-based therapeutic modalities - Nature Reviews Drug Discovery
Induced proximity modalities encompass monovalent and bifunctional agents, such as molecular glues and proteolysis-targeting chimeras, that induce an interaction between biomolecules to functionally m...
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Dan Nomura @dannomura.bsky.social · 22/10/2025
New from the Cravatt Lab! Tryptoline stereoprobes reveal hidden cysteine ligandability: while Boltz-2 nails orthosteric sites but burns out on non-orthosteric ones. A masterpiece of chemoproteomics + AI. 🔗 doi.org/10.1101/2025...
doi.org
Tryptoline Stereoprobe Elaboration Identifies Inhibitors of the GRPEL1-HSPA9 Chaperone Complex
Activity-based protein profiling has identified hundreds of proteins from diverse classes that react at specific cysteine residues with stereochemically defined electrophilic compounds (stereoprobes) ...
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Dan Nomura @dannomura.bsky.social · 22/10/2025
We unveil TRACERs, Transcriptional Regulation via Active Control of Epigenetic Reprogramming: a new small-molecule-based induced-proximity modality that silences transcription factors by recruiting endogenous corepressor complexes for locus-specific repression. www.biorxiv.org/content/10.1...
biorxiv.org
Targeted Transcriptional Repression by Induced Proximity
Most cancer driving proteins remain undruggable due to the absence of ligandable pockets and their reliance on intrinsically disordered or protein-DNA/protein-protein interactions. Transcription facto...
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Dan Nomura @dannomura.bsky.social · 29/09/2025
Looking forward to seeing friends and giving a talk about our latest research at @stanfordchemistry.bsky.social @stanforduniversity.bsky.social tomorrow! chemistry.stanford.edu/events/chemi...
chemistry.stanford.edu
Chemical Biology Seminar: Professor Dan Nomura, University of California, Berkeley | Chemistry
About the Seminar "Reimagining Druggability using Chemoproteomic Platforms"The Nomura Research Group is focused on reimagining druggability using chemoproteomic platforms to develop transformative med...
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Dan Nomura @dannomura.bsky.social · 04/08/2025
We’re happy to highlight our newest @biorxivpreprint.bsky.social by postdoc Thang Cong Do and Octant on the discovery of a direct-acting, covalent destabilizing degrader of immune & cancer transcription factors IRF8 & IRF5! Also thanks to @themarkfdn.bsky.social ! www.biorxiv.org/content/10.1...
biorxiv.org
Covalent Degraders of Immune Regulatory Transcription Factors IRF8 and IRF5
Transcription factors are among the most challenging targets for drug discovery due to their lack of classical binding pockets and high degree of intrinsic disorder, despite the therapeutic importance...
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Dan Nomura @dannomura.bsky.social · 27/06/2025
This paper now out in ACS Central Science!! pubs.acs.org/doi/10.1021/...
pubs.acs.org
DCAF16-Based Covalent Degradative Handles for the Modular Design of Degraders
While targeted protein degradation is a powerful strategy for eliminating disease-causing proteins, the rational design of monovalent or molecular glue degraders remains challenging. In this study, we...
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Dan Nomura @dannomura.bsky.social · 13/06/2025
Awesome to be back in Cambridge for #ChemBiointhePub ahead of the Bioorganic Chemistry GRC!
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Dan Nomura @dannomura.bsky.social · 10/06/2025
Our latest paper w/ @pottslab.bsky.social & @amgen.bsky.social in @jacs.acspublications.org by co-first authors @cmzammit.bsky.social & Cory Nadel on discovery of covalent destabilizing degrader of AR & AR-V7 in prostate cancer. Thanks also to @themarkfdn.bsky.social ! pubs.acs.org/doi/10.1021/...
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Molecular Therapeutics Initiative @mti-ucb.bsky.social · 08/06/2025
Excited to announce a new collaboration between the Molecular Therapeutics Initiative (MTI) and Amgen Inc.! This partnership includes funding for cutting-edge research & an internship program for grad students to train in drug discovery & development at Amgen. #MTI #Amgen #Biotech #UCB
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Jordan Meier @doc-jlmeier.bsky.social · 03/06/2025
Bioorganic GRC is set! I got tired of the lack of swag so made a couple of unofficial tees. Order one if you want to support the conference (or simply enjoy strange looks in grocery stores). Spirit: chembio-shop.fourthwall.com/products/grc... World Tour: chembio-shop.fourthwall.com/products/spi...
chembio-shop.fourthwall.com
Spirit
Preliminary score: ND
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James Olzmann @olzmannlab.bsky.social · 29/05/2025
Thrilled this paper is out! We solved the first cocrystal structure of FSP1 with an inhibitor (FSEN1), providing mechanistic insight & a foundation for medchem. Led by Amalia Megarioti & Sitao Zhang. A terrific collaboration with Da Jia. Brief Skytorial! 1/9
pnas.org
Cocrystal structure reveals the mechanism of FSP1 inhibition by FSEN1 | PNAS
FSP1 is an FAD-dependent oxidoreductase that uses NAD(P)H to regenerate the reduced forms of lipophilic quinone antioxidants, such as coenzyme Q10 ...
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Dan Nomura @dannomura.bsky.social · 19/05/2025
Congrats to chem bio grad students Ellie King, Lauren Orr, and Vienna Thomas on graduating with their PhD's!
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Dan Nomura @dannomura.bsky.social · 16/05/2025
Our 2025 lab photo!
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Alexander Hanzl @alexanderhanzl.bsky.social · 08/05/2025
- Mutations mimicking glues by @brianliau.bsky.social al and Ning Zheng - Covalent and bivalent glue engagement by @dannomura.bsky.social, Nathanael Gray, @georgwinter.bsky.social and @alessiociulli.bsky.social - And finish it of with a discussion on general mode-of-action.
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Micha Rapé Lab @micharapelab.bsky.social · 07/05/2025
Excited that our work revealing the structure and function of the monster stress response silencing factor, the E3 ligase SIFI, is now out! Congratulations to the most amazing team of Zhi Yang, Diane Haakonsen, Michael Heider and Sam Witus! www.nature.com/articles/s41...
nature.com
Molecular basis of SIFI activity in the integrated stress response - Nature
Nature - Molecular basis of SIFI activity in the integrated stress response
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Dan Nomura @dannomura.bsky.social · 06/05/2025
www.statnews.com/2025/05/06/h...
statnews.com
How to stop the shift of drug discovery from the U.S. to China
U.S. pharmaceutical companies are increasingly licensing new drugs from China. Former FDA Commissioner Scott Gottlieb explains how to stop the shift.
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Jordan Meier @doc-jlmeier.bsky.social · 04/05/2025
New-preprint alert! We use chemoproteomic profiling to show MYST KAT inhibitors exhibit hierarchical target engagement (KAT6A/B > KAT7 >> KAT8). Reminiscent of Type I kinase inhibitors, the selectivity of these small molecules varies based on concentration. www.biorxiv.org/content/10.1...
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Dan Nomura @dannomura.bsky.social · 26/04/2025
Excited to highlight our latest preprint by graduate student Lauren Orr on the discovery of a covalent degradative handle that acts through two unique C173 and C178, on the E3 ligase DCAF16 that can be used to modularly design monovalent and bifunctional degraders. www.biorxiv.org/content/10.1...
biorxiv.org
DCAF16-Based Covalent Degradative Handles for the Modular Design of Degraders
Targeted protein degradation (TPD) is a powerful strategy for targeting and eliminating disease-causing proteins. While heterobifunctional Proteolysis-Targeting Chimeras (PROTACs) are more modular, th...
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Michael Erb @michael-erb.bsky.social · 26/04/2025
On my way to #aacr25. I’ll be chairing Part 3 of “Chemistry to the Clinic” tomorrow (4/26 at 2:30) with talks from @dannomura.bsky.social and @xiaoyuzhang.bsky.social. Weather report calls for lots of chemoproteomics, molecular glues, and tough targets. Please join us!
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Dan Nomura @dannomura.bsky.social · 26/04/2025
Excited to moderate a panel at the @theaacr.bsky.social CICR townhall at #2025AACR on "Charting the Course: Innovating Cancer Drug Discovery in a Challenging Landscape" alongside Shiva Malek, Gwenn Hansen, Ryan Schoenfeld, and Joseph Pearlberg!
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Dan Nomura @dannomura.bsky.social · 26/04/2025
Back in Chicago for #2025AACR! I’ll be giving a talk on our latest work tomorrow in the Educational Session on Advances in Ligand Discovery to Enable Previously Intractable Targets on Sat Apr 26th 2:30-4:00pm in S406 McCormick South alongside @michael-erb.bsky.social & @xiaoyuzhang.bsky.social !
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Dan Nomura @dannomura.bsky.social · 25/04/2025
Amazing talk yesterday by @rushika-perera.bsky.social for our Molecular Therapeutics seminar series!
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Dan Nomura @dannomura.bsky.social · 03/04/2025
Had such an awesome time at @themarkfdn.bsky.social symposium today!!
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Dan Nomura @dannomura.bsky.social · 27/03/2025
Amazing Quality Control Life Processes conference in Frankfurt organized by @idikic.bsky.social !! Great science, great friends!
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Dan Nomura @dannomura.bsky.social · 27/03/2025
Cool paper from Woo lab: www.biorxiv.org/content/10.1101/202…
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Dan Nomura @dannomura.bsky.social · 24/03/2025
Cool paper from Rullo lab: www.nature.com/articles/s41...
nature.com
Mimicry of molecular glues using dual covalent chimeras - Nature Communications
The authors report the development of dual covalent proximity inducing molecules capable of selectively cross-linking two non-interacting proteins. Through the selective proximity-based activation of ...
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Dan Nomura @dannomura.bsky.social · 24/03/2025
Cool paper from Crabtree and Gray labs: www.biorxiv.org/content/10.1...
biorxiv.org
A Bivalent Molecular Glue Linking Lysine Acetyltransferases to Oncogene-induced Cell Death
Developing cancer therapies that induce robust death of the malignant cell is critical to prevent relapse. Highly effective strategies, such as immunotherapy, exemplify this observation. Here we provi...
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Eric Topol @erictopol.bsky.social · 23/03/2025
A pie graph worth keeping in mind as the NIH budget plummets jamanetwork.com/journals/jam... for 356 new FDA drugs approved
graph of NIH basisfor new drugs
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Dan Nomura @dannomura.bsky.social · 23/03/2025
Cool paper from Parker lab: www.biorxiv.org/content/10.1...
biorxiv.org
Proteome-Wide Discovery of Degradable Proteins Using Bifunctional Molecules
Targeted protein degradation (TPD) is an emergent therapeutic strategy with the potential to circumvent challenges associated with targets unamenable to conventional pharmacological inhibition. Among ...
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Dan Nomura @dannomura.bsky.social · 21/03/2025
Amazing meeting last week in Germany: 130th International Titisee Conferences on Stress Signalling in Development and Disease organized by Brenda Schulman & @micharapelab.bsky.social !
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Ryan Potts - real @pottslab.bsky.social · 21/03/2025
🚨 Rational discovery of VHL molecular glues. New Preprint from @amgen.bsky.social Induced Proximity group led by postdoc Jonathan Bushman reports the discovery of a VHL molecular glue degrader of GEMIN3 by Picowell RNA-seq. Read on for details. 🧵1/8 www.biorxiv.org/content/10.1...
biorxiv.org
Discovery of a VHL molecular glue degrader of GEMIN3 by Picowell RNA-seq
Targeted protein degradation (TPD) is an emerging therapeutic modality in which small molecules are used to recruit targets to the natural protein degradation machinery of the cell. Molecular glue deg...
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Dan Nomura @dannomura.bsky.social · 19/03/2025
www.latimes.com/california/story/20…
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Dan Nomura @dannomura.bsky.social · 19/03/2025
www.thedp.com/article/2025/03/penn-…
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Geordi Frere @geordifrere.bsky.social · 11/03/2025
Researchers at Genentech published an interesting preprint describing the discovery of a #monovalent electrophilic #degrader of SMARCA2/4 that acts as a #molecularglue mediating an interaction with "frequent hitter" E3 ligase FBXO22. www.biorxiv.org/content/10.1...
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Jeremy Berg @jeremymberg.bsky.social · 11/03/2025
You want my thoughts? I'll give you my thoughts...🤬🤬🤬🤬🤬 Oh, you want my understanding of why this is happening? There is no reasonable justification not to have these scheduled at this point. Even if they need to sort out dealing with applications that include "forbidden" topics, schedule now.
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Dan Nomura @dannomura.bsky.social · 07/03/2025
www.gsa.gov/about-us/new...
gsa.gov
DOJ, HHS, ED, and GSA Announce Initial Cancellation of Grants and Contracts to Columbia University Worth $400 Million
Today, the Department of Health and Human Services (HHS), Department of Education (ED), and the U.S. General Services Administration (GSA) announced that through their coordinated efforts they would i...
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Max Kozlov @maxkozlov.bsky.social · 06/03/2025
NIH announces that it will move all grant reviews to Center for Scientific Review (CSR) and terminate about half of its review staff. This comes as there is already a building backlog from cancelled review meetings and layoffs. "We're already massively behind schedule," a review officer tells me.
nih.gov
NIH centralizes peer review to improve efficiency and strengthen integrity
The proposed approach is expected to save more than $65 million annually.
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Dan Nomura @dannomura.bsky.social · 06/03/2025
www.nature.com/articles/d41...
nature.com
Exclusive: NIH to terminate hundreds of active research grants
Studies that touch on LGBT+ health, gender identity and DEI in the biomedical workforce could be terminated, according to documents obtained by Nature.
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Jamie Cate @jhdcate.bsky.social · 01/03/2025
The whole ncbi.nlm.nih.gov site is down.
ncbi.nlm.nih.gov
National Center for Biotechnology InformationTwitterFacebookLinkedInGitHubNCBI Insights BlogTwitterFacebookYoutube
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Dan Nomura @dannomura.bsky.social · 28/02/2025
Cool paper from Cravatt lab on an allosteric cyclin E-CDK2 site mapped by paralog hopping with covalent probes www.nature.com/articles/s41...
nature.com
An allosteric cyclin E-CDK2 site mapped by paralog hopping with covalent probes - Nature Chemical Biology
Development of a paralog-hopping approach leveraging chemical proteomic data on covalently liganded cysteines revealed an allosteric pocket shared by cysteine-containing and cysteine-less paralogous c...
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Dan Nomura @dannomura.bsky.social · 27/02/2025
New @biorxivpreprint.bsky.social from our lab, Maimone lab, and @novartis.bsky.social on a covalent destabilizing degrader of myc that acts through stereoselective targeting of an IDR C203 in MYC! Congrats to first authors Hannah Rosen and Kelvin Li! www.biorxiv.org/content/10.1...
biorxiv.org
Sulfinyl Aziridines as Stereoselective Covalent Destabilizing Degraders of the Oncogenic Transcription Factor MYC
While MYC is a significant oncogenic transcription factor driver of cancer, directly targeting MYC has remained challenging due to its intrinsic disorder and poorly defined structure, deeming it undru...
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Dan Nomura @dannomura.bsky.social · 27/02/2025
www.science.org/content/arti...
science.org
NIH ban on renewing senior scientists adds to assaults on its in-house research
Policy follows firings of tenure-track scientists and suspension of training programs
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Dan Nomura @dannomura.bsky.social · 27/02/2025
Cool paper from Matt Bogyo’s lab: pubs.acs.org/doi/10.1021/...
pubs.acs.org
Identification of Covalent Cyclic Peptide Inhibitors Targeting Protein–Protein Interactions Using Phage Display
Peptide macrocycles are promising therapeutics for a variety of disease indications due to their overall metabolic stability and potential to make highly selective binding interactions with targets. Recent advances in covalent macrocycle peptide discovery, driven by phage and mRNA display methods, have enabled the rapid identification of highly potent and selective molecules from large libraires of diverse macrocycles. However, there are currently limited examples of macrocycles that can be used to disrupt protein–protein interactions and even fewer examples that function by formation of a covalent bond to a target protein. In this work, we describe a directed counter-selection method that enables identification of covalent macrocyclic ligands targeting a protein–protein interaction using a phage display screening platform. This method utilizes binary and ternary screenings of a chemically modified phage display library, employing the stable and weakly reactive aryl fluorosulfate electrophile. We demonstrate the utility of this approach using the SARS-CoV-2 spike-ACE2 protein–protein interaction and identify multiple covalent macrocyclic inhibitors that disrupt this interaction. The resulting compounds displayed antiviral activity against live virus that was irreversible after washout due to the covalent binding mechanism. These results highlight the potential of this screening platform for developing covalent macrocyclic drugs that disrupt protein–protein interactions with long lasting effects.
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Dan Nomura @dannomura.bsky.social · 27/02/2025
www.science.org/content/arti...
science.org
NIH to partially lift freeze on grant reviews, but obstacles remain
Pause on posting notices had led to scores of canceled meetings
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Dan Nomura @dannomura.bsky.social · 26/02/2025
Headed to Boston to give a talk about our latest research at MIT Biological Engineering hosted by Angela Koehler and then visit my friends at @novartis.bsky.social ! Look out for a new Biorxiv coming out of our lab imminently on a new covalent MYC degrader! be.mit.edu/our-communit...
be.mit.edu
Seminars | MIT Department of Biological Engineering
Invited researchers and academics share and discuss their work at the BE Seminar Series. Our Doctoral students present their research at the Bioengineering & Toxicology Seminars.
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Dan Nomura @dannomura.bsky.social · 24/02/2025
After an awesome Targeted Protein Degradation Keystone meeting last week, happy to be back @ethzurich.bsky.social this week to give a talk about our latest work alongside the great @songlin1.bsky.social ! chab.ethz.ch/en/research/...
chab.ethz.ch
Events
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 23/02/2025
Thank you @nplb.bsky.social for speaking out in defense of patients, the US economy and our citizenship. Encouraged to see biopharma and investors among patients, health care providers, scientists and policy makers. www.nopatientleftbehind.org/defending-th...
nopatientleftbehind.org
Defending the NIH, the NSF and the foundation of American science — No Patient Left Behind
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