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Geordi Frere

@geordifrere.bsky.social
503 followers 414 following 40 posts

I used to spin things 🧲, now I weigh them ⚖️ Postdoc in the Gygi Lab at Harvard Medical School | Chemoproteomics & Chemical Biology | PhD in Chemistry, Gunning & Prosser labs at the University of Toronto | Rugby 🏉 & D&D 🎲

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Geordi Frere @geordifrere.bsky.social · 24/11/2025
Oh my god, the Roku holiday idle screen is a Grinch-themed Walmart ad. Tell me you missed the point of The Grinch without telling me you missed the point of The Grinch! Total marketing facepalm 😂
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Geordi Frere @geordifrere.bsky.social · 28/04/2025
Why does the donut display at the Buffalo airport Timmies look better than any I've seen in Canada?
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Geordi Frere @geordifrere.bsky.social · 26/04/2025
An #organicchemistry mechanistic puzzle for your Saturday morning coffee: the Jacobsen-Huisgen indazole synthesis! This reaction was used to synthesize Lilly's oral GLP-1 agonist orforglipron (patents.google.com/patent/US202...). Take a crack at the mechanism, then see the question below!
The Jacobsen-Huisgen indazole synthesis
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Geordi Frere @geordifrere.bsky.social · 23/03/2025
New preprint by Chris Parker on target-agnostic PROTACs comprising diverse target-binding moieties linked to a CRBN ligand to explore the degradable proteome. Proteomic profiling identified >50 proteins that were degraded by this library, revealing potential starting points for PROTAC development.
biorxiv.org
Proteome-Wide Discovery of Degradable Proteins Using Bifunctional Molecules
Targeted protein degradation (TPD) is an emergent therapeutic strategy with the potential to circumvent challenges associated with targets unamenable to conventional pharmacological inhibition. Among ...
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Geordi Frere @geordifrere.bsky.social · 14/03/2025
A new paper in PNAS identifies tumabulin-2 as a #molecularglue targeting the tripartite interface of α-tubulin, β-tubulin, & RB3 to elicit a novel mechanism of microtubule disruption via stabilization of a polymer-incompatible complex & sequestration of tubulin dimers! www.pnas.org/doi/10.1073/...
Crystal structure of tumabulin with tubulin-RB3 reveals a novel binding site and molecular glue mechanism
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Geordi Frere @geordifrere.bsky.social · 11/03/2025
Researchers at Genentech published an interesting preprint describing the discovery of a #monovalent electrophilic #degrader of SMARCA2/4 that acts as a #molecularglue mediating an interaction with "frequent hitter" E3 ligase FBXO22. www.biorxiv.org/content/10.1...
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Geordi Frere @geordifrere.bsky.social · 04/03/2025
A major breakthrough for the Mitsunobu reaction! New work from the Charette lab at UMontreal reports a universal Mitsunobu reagent with no limitation on nucleophile pKa, expanding substrate scope to include primary & secondary amines that were previously incompatible with this reaction!
onlinelibrary.wiley.com
Universal Reagent for Mild and Stereospecific Nucleophilic Substitution of Alcohols with Amines
A user-friendly, shelf-stable protonated betaine reagent (BEHT triflate), derived from Mitsunobu reagents, has been developed to enable the direct displacement of alcohols using primary and secondary...
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Geordi Frere @geordifrere.bsky.social · 11/02/2025
This is the most convoluted headline I've ever read apnews.com/article/trum...
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Geordi Frere @geordifrere.bsky.social · 28/01/2025
Even after the much-needed increase in CIHR scholarship stipends, fewer than 10% of grad students and postdocs receive these awards. All other trainees rely upon funding supplemented by their supervisors, drawing from CIHR funding that hasn't increased in 20 years. www.nature.com/articles/d41...
nature.com
Canada’s postgraduate funding gap is still yawning even after budget increases
Letter to the Editor
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Geordi Frere @geordifrere.bsky.social · 24/01/2025
In a new paper in @naturechemistry.bsky.social, Patrick Barth & colleagues use solvent-mediated allosteric network models to design synthetic adenosine receptors with high signalling activity & thermostability that crystallize in an active-like state without G protein! www.nature.com/articles/s41...
nature.com
Computational design of highly signalling-active membrane receptors through solvent-mediated allosteric networks - Nature Chemistry
Solvent-mediated interaction networks control a wide range of protein functions, but their design has been neglected owing to a lack of accurate computational tools. Now it is shown that allosteric si...
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Geordi Frere @geordifrere.bsky.social · 20/01/2025
Michael: "Janet, could you draw the mechanism for the Dess-Martin oxidation?" Janet: "Here you go!" Michael: *long pause, resigned nod* "...Thank you, Janet."
Abysmal DALL-E attempt at the Dess-Martin oxidation mechanism.
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Geordi Frere @geordifrere.bsky.social · 04/01/2025
A rigorous study of UPS tool compounds for #degrader evaluation is published by Stefan Knapp @thesgc.bsky.social in ACS Chemical Biology! They determine the optimal doses of UPS pathway inhibitors that rescue degradation without displaying off-target activity and toxicity. dx.doi.org/10.1021/acsc...
dx.doi.org
Functional Characterization of Pathway Inhibitors for the Ubiquitin-Proteasome System (UPS) as Tool Compounds for CRBN and VHL-Mediated Targeted Protein Degradation
Small molecule degraders such as PROteolysis TArgeting Chimeras (PROTACs) and molecular glues are new modalities for drug development and important tools for target validation. When appropriately opti...
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Geordi Frere @geordifrere.bsky.social · 29/12/2024
A new paper in #JACS @acsjacs.bsky.social employs aldehyde cyclization chemistry to orthogonally double-label proteins at N-terminal and intra-chain cysteines with paramagnetic tags, allowing the authors to study protein oligomerization using EPR distance measurements. pubs.acs.org/doi/10.1021/...
pubs.acs.org
Efficient Orthogonal Spin Labeling of Proteins via Aldehyde Cyclization for Pulsed Dipolar EPR Distance Measurements
Pulsed dipolar electron paramagnetic resonance (PD-EPR) measurement is a powerful technique for characterizing the interactions and conformational changes of biomolecules. The extraction of these dist...
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Geordi Frere @geordifrere.bsky.social · 28/12/2024
A new paper in #JACS @acsjacs.bsky.social describes a clever approach to profiling reactive carbonyl-containing metabolites and generating #covalent ligands/activity-based probes in living cells using an aqueous Wittig reaction! pubs.acs.org/doi/10.1021/...
pubs.acs.org
Chemoselective Stabilized Triphenylphosphonium Probes for Capturing Reactive Carbonyl Species and Regenerating Covalent Inhibitors with Acrylamide Warheads in Cellulo
Reactive carbonyl species (RCS) are important biomarkers of oxidative stress-related diseases because of their highly reactive electrophilic nature. Despite their potential as triggers for prodrug activation, selective labeling approaches for RCS remain limited. Here, we utilized triphenylphosphonium groups to chemoselectively capture RCS via an aqueous Wittig reaction, forming α,β-unsaturated carbonyls that enable further functionalization. We first designed native (light) and deuterated (heavy) probes to facilitate RCS metabolomic identification through distinct MS isotope patterns. This approach allowed us to capture and relatively quantify several endogenous RCS related to advanced lipoxidation/glycation end products (ALEs/AGEs). Second, we demonstrated that various endogenous RCS can trigger the in situ generation of acrylamide warheads of targeted covalent inhibitors (TCIs) with different substituents. These structural variations influence their protein binding profiles and consequently alter their cytotoxicity, which is beneficial for the development of inhibitor cocktails.
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Geordi Frere @geordifrere.bsky.social · 03/04/2024
A great new review on the unifying features & screening methods of #molecularglues & bifunctional compounds by Stuart Schreiber! He underlines the importance of maximizing chemical diversity to uncover new MOAs & shows how #DOS & #DELs enable discovery of novel glues! chemrxiv.org/engage/chemr...
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Geordi Frere @geordifrere.bsky.social · 06/01/2024
Happy belated #FluorescenceFriday for those who celebrate! #RealTimeChem
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Geordi Frere @geordifrere.bsky.social · 30/11/2023
Question for #chemsky: In protic solvents, F- is the worst halide Nu due to H-bonding with solvent while I- is the best. The trend reverses in aprotic solvents. Does the same hold for alkoxides & thiolates in aprotic solvents? I thought thiolates are always more nuclophilic!
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Geordi Frere @geordifrere.bsky.social · 25/10/2023
This is wild: treating triethylamine with benzoyl peroxide provides a four-carbon synthon to access phthalimides from the corresponding maleimides. 🤯 pubs.acs.org/doi/10.1021/...
pubs.acs.org
Benzannulation with Et3N as 1,3-Diene Variants
With triethylamine as a 1,3-diene variant, a simple and practical process for the synthesis of phthalimides has been developed from readily available maleimide. The transformation can be performed in ...
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Geordi Frere @geordifrere.bsky.social · 25/10/2023
The only thing that's missing from Bluesky is post notifications
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Reposted by Geordi Frere
Derek Lowe @dereklowe.bsky.social · 16/10/2023
Tracking down why what’s supposed to be the same bacterial growth medium can give such different results: an unexpected impurity!
science.org
Science | AAAS
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Reposted by Geordi Frere
Celeste Labedz @celestelabedz.bsky.social · 31/08/2023
I'm a geologist and this isn't cute or funny. Rocks only climb trees like this when they're very stressed.
Sculpture of a leafless tree with a bunch of boulders in the crooks of the branches, in front of a building.
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Geordi Frere @geordifrere.bsky.social · 31/08/2023
Did... did we do it? Has the chemistry community finally settled on a new social media home on chemsky?
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