Sign in

Dan Sprockett

@danielsprockett.bsky.social
807 followers 1K following 46 posts

New Assistant Professor | sprockettlab.com My lab works on the ecology and evolution of the microbiome. Former CIHMID Postdoc Fellow at Cornell. Stanford M&I Alum. NMDC Microbiome Data Champion @microbiomedata.org

PostsRepliesMedia
Dan Sprockett @danielsprockett.bsky.social · 29/09/2026
I'm really looking forward to spending a few days with scientists and engineers with such a broad set of interests and perspectives. @uncg.edu
Flyer for NanoImpacts 2026 "Living Systems Across the Nanoscale" a conference at the Joint School of Nanoscience and Nanoengineering in Greensboro, North Carolina on October 7-8, 2026.
111
Reposted by Dan Sprockett
Simon Roux @simrouxvirus.bsky.social · 31/07/2026
Session proposals are now open for ASM Microbe 2027 ! asm.org/events/asm-m... If there is a specific topic or speaker you would like to see in Chicago, this is your chance (until Aug 12) ! This is for Micro Symposia and Hub Sessions, but my DMs are open if you have ideas for bigger AEM sessions
asm.org
ASM Microbe | Overview
ASM Microbe showcases the best microbial sciences in the world and provides a one-of-a-kind forum to explore everything from basic microbiology to translation and application.
0510
Reposted by Dan Sprockett
Jason Rasgon @vectorgen.bsky.social · 29/07/2026
I love the reaction from former trainees when they're budgeting their first big independent grant and realize how much of the budget goes simply to pay people, as opposed to lab supplies etc... Suddenly all the things I bitch about make sense to them
static.klipy.com
Fred Flintstone: The Math Ain't Mathin'
ALT: Fred Flintstone: The Math Ain't Mathin'
1181
Reposted by Dan Sprockett
Steven Robbins @stevenjrobbins.bsky.social · 22/07/2026
It's out! Excited to present the Great Barrier Reef Microbial Genomes Database (GBR-MGD), a comprehensive DB of 1000s of high-quality prokaryote, virus, plasmid, and chromosome-level eukaryote MAGs using Nanopore long reads. Subthreads incoming. Please share widely. 🙂 www.nature.com/articles/s41...
nature.com
The planktonic microbiome of the Great Barrier Reef - Nature
The Great Barrier Reef Microbial Genomes Database compiles prokaryotic, viral and eukaryotic genomes from seawater collected from the Great Barrier Reef, providing a rich resource for the study of mar...
88342
Reposted by Dan Sprockett
Amy D Willis @amydwillis.bsky.social · 16/06/2026
I'm hiring a #postdoc!! 🥳 Official ad is making its way through HR but If you have interests in statistical methodology OR microbial bioinformatics, please reach out via my UW email. I'll share the description with you when it's available. 🔥😻
02521
Reposted by Dan Sprockett
Chuliang Song @clsong.com · 16/06/2026
Spent the last two years developing a new Intro to Physics course for undergrad biology majors. It features tons of examples from biology (especially Ecology & Evolution!) and requires only middle school-level math. Lecture note here shorturl.at/0PiVp Any comments or feedback are highly welcome!
drive.google.com
physics_for_biologists.pdf
312054
Reposted by Dan Sprockett
McSweeney's @mcsweeneys.net · 14/05/2026
Q: Does my thesis adviser pick the snake? A: No. Your adviser just tells the guy who picks the snakes how good your thesis was.
buff.ly
FAQ: The “Snake Fight” Portion of Your Thesis Defense
March 13 2022 4/24/23 5/8/24 5/13/26 CALENDAR 2027
8259100
Reposted by Dan Sprockett
Greg Medlock @gregmedlock.bsky.social · 01/05/2026
Save the date - join the 9th International Conference on Microbiome Engineering! 📍Durham, NC 🗓️ Dec 1-3, 2026 Are you obsessed with controlling microbiomes? Want to learn all the ways accomplishing this goal benefits society? This is the meeting for you! www.aiche.org/sbe/conferen...
aiche.org
9th International Conference on Microbiome Engineering
This conference brings together scientists across the quickly growing field of microbiome engineering. The conference integrates synthetic biology, systems biology, microbial ecology, and bioinformati...
032
Dan Sprockett @danielsprockett.bsky.social · 27/04/2026
Thrilled to be heading to @ucriverside.bsky.social as the MCBL GSA invited speaker for the Microbiology Seminar Series! I'm looking forward to meeting everyone and learning about all the great science going on there!
000
Reposted by Dan Sprockett
Tami Lieberman @contaminatedsci.bsky.social · 22/04/2026
Interested in a *staff computational scientist* position? We are looking for an experienced computational biologist (ideally with microbiology experience) to support published packages while also driving new research. Pay range $73k-$111k w excellent benefits. careers.peopleclick.com/careerscp/cl...
careers.peopleclick.com
Computational Biology Program Scientist
MIT - Computational Biology Program Scientist - Cambridge MA 02139
14574
Reposted by Dan Sprockett
MEEhubs @meehubs.bsky.social · 08/04/2026
REMINDER - Abstract submission deadline for MEEHubs2026 is April 19! Get you abstract in and present at one of the hubs August 3-5, 2026✨You'll be in great company! We have a fantastic lineup of speakers‼️ Links and more info here: meehubs.org
meehubs.org
Home
0812
Reposted by Dan Sprockett
Nandita Garud @nanditagarud.bsky.social · 31/03/2026
I am excited to share our latest paper, Uniform bacterial genetic diversity along the gut, now out in Nature Communications! www.nature.com/articles/s41.... (1/n)
27032
Reposted by Dan Sprockett
Nichole Broderick, PhD @nabroderick.bsky.social · 20/03/2026
Excited to announce our new journal from @isme-microbes.bsky.social ISME Host Microbe is live and now accepting submissions. Look forward to receiving your papers! #Microsky 🧫 🦠
Image of the cover of the 1st volume of ISME Host Microbe a new official journal of the International Society for Microbial Ecology. Cover images shows a plant stomata with bacteria around and entering.
312587
Dan Sprockett @danielsprockett.bsky.social · 30/03/2026
If I had only realized that my kids were running experiments all weekend! "Microbiota transfers were performed with repeated seeding of forest soil onto rugs placed in the home entryway." link.springer.com/article/10.1...
link.springer.com
Environmental microbiota transfer from forest soil into urban homes: a proof-of-principle study - Microbiome
Background Urban lifestyles are characterized by reduced encounters of environmental microbe stimuli that activate immunoregulatory pathways. This has been linked to an increased risk of inflammatory ...
180
Reposted by Dan Sprockett
Gang Fang @gangfang.bsky.social · 05/02/2026
New Preprint 📢 from our team 🔎 Critical assessment of #intratumor and #low #biomass #microbiome using #longread sequencing Some studies suggest bacteria 🦠 live inside tumors and influence cancer treatment. But there’s also been a major #debate: in these very​ low-microbe tissue samples, how much 1/
24419
Reposted by Dan Sprockett
Michael Baym @baym.lol · 06/01/2026
New preprint from my lab (with Arya Kaul, @fernpizza.bsky.social, and @brinda.eu), in which we explore new genes hitchhiking on the beneficial deletion that fused them together, and find them in the LTEE, M. Tb/bovis, and across the bacterial tree of life
58636
Reposted by Dan Sprockett
Kara Marshall @karalmarshall.bsky.social · 07/12/2025
I think everyone can relate to the importance of science for healthcare, and I’ve been sharing these slides for people to use and adapt with their own stories! youtu.be/BY_SFgi-Cig
youtu.be
Kara Marshall PHD-History of Science in America - Trilogy at Tehaleh 04/27/25
YouTube video by Steve Lawson
163
Dan Sprockett @danielsprockett.bsky.social · 02/12/2025
I'll be @dukemedschool.bsky.social next week presenting my research: “Ancient Partnerships, Modern Insights: Tracing the Assembly, Transmission, and Evolution of Mammalian Gut Microbes”. sites.duke.edu/microbiome/2... Come say Hi! @duke-university.bsky.social #microbiome
sites.duke.edu
Special Research Seminar – 12/10/2025
Daniel Sprockett from Wake Forest University School of Medicine will be visiting Duke to present some of his research to…
060
Reposted by Dan Sprockett
Tami Lieberman @contaminatedsci.bsky.social · 01/12/2025
Poster deadline for the Keystone Microbiome Meeting in Banff is December 30th www.keystonesymposia.org/conferences/... Will be a great meeting focused on human microbiomes, spanning basic, mechanistic, and applied. Organized by myself, @amibhatt.bsky.social , and Harry Sokol. Join us!
keystonesymposia.org
Human Microbiome: From Models and Mechanism to Medicine | Keystone Symposia
Join us at the Keystone Symposia on Human Microbiome: From Models and Mechanism to Medicine, January 2026, in Banff, with field leaders!
01112
Dan Sprockett @danielsprockett.bsky.social · 01/12/2025
Proud to have contributed to this important work! STREAMS guidelines: standards for technical reporting in environmental and host-associated #microbiome studies. www.nature.com/articles/s41... @natmicrobiol.nature.com
nature.com
STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies - Nature Microbiology
This Consensus Statement presents the standards for technical reporting in environmental and host-associated microbiome studies (STREAMS) guidelines.
053
Reposted by Dan Sprockett
Rob Patro @robp.bsky.social · 25/11/2025
Ok; mim (github.com/COMBINE-lab/...) preprint submitted! Excited for folks to see it and share thoughts. The key takeaway; mim allows the quick, one-time, building of a small auxiliary index that then allows scaling gzipped FASTQ parsing linearly in # of threads. 1/2
github.com
GitHub - COMBINE-lab/mim: A small, auxiliary index to massively improve parallel fastq parsing
A small, auxiliary index to massively improve parallel fastq parsing - COMBINE-lab/mim
12713
Dan Sprockett @danielsprockett.bsky.social · 06/09/2025
If anyone happens to be around UNC Chapel Hill this week, I'll be speaking on Tuesday: www.med.unc.edu/cgibd/event/... @microbiomeunc.bsky.social #microbiome
med.unc.edu
"The Assembly, Evolution, and Clinical Implications of the Gut Microbiota in Early Life" With Daniel Sprockett, PhD, MSc | Center for Gastrointestinal Biology and Disease
155
Reposted by Dan Sprockett
Ben Good @benjaminhgood.bsky.social · 16/08/2025
Excited to share a new preprint w/ the Sonnenberg lab, led by Matt Carter, @zzzhiru.bsky.social & @mattolm.bsky.social. We analyzed the microbiomes of two non-industrialized populations from opposite sides of the globe to try to reconstruct the recent evolutionary history of our gut microbiota.
biorxiv.org
Prehistoric Global Migration of Vanishing Gut Microbes With Humans
The gut microbiome is crucial for health and greatly affected by lifestyle. Many microbes common in non-industrialized populations are disappearing or extinct in industrialized populations. Understand...
26521
Dan Sprockett @danielsprockett.bsky.social · 16/08/2025
Check out this incredible analysis! Prehistoric Global Migration of Vanishing Gut Microbes With Humans www.biorxiv.org/content/10.1...
biorxiv.org
Prehistoric Global Migration of Vanishing Gut Microbes With Humans
The gut microbiome is crucial for health and greatly affected by lifestyle. Many microbes common in non-industrialized populations are disappearing or extinct in industrialized populations. Understand...
0116
Reposted by Dan Sprockett
Katherine Xue @ksxue.bsky.social · 17/07/2025
The Xue lab at UC Irvine is looking for a staff scientist to support our work investigating how microbes interact and evolve in the gut microbiome! Open to a wide range of previous experience levels, see ad for more. recruit.ap.uci.edu/JPF09601
recruit.ap.uci.edu
Junior, Assistant, or Associate Specialist – Xue Lab
University of California, Irvine is hiring. Apply now!
0117112
Reposted by Dan Sprockett
Nandita Garud @nanditagarud.bsky.social · 22/07/2025
I am seeking a postdoc for my group at UCLA. We work at the intersection of population genetics x microbiome (garud.eeb.ucla.edu). If interested, please message me!
garud.eeb.ucla.edu
Garud Lab
18598
Dan Sprockett @danielsprockett.bsky.social · 14/08/2025
Looks like it'll be a good one!
030
Reposted by Dan Sprockett
Ran Blekhman @blekhman.bsky.social · 20/05/2025
Excited to share the Compendium Manager -- our new tool for scaling bioinformatics pipelines! Launch thousands of analyses, track progress, and maintain reproducibility. Developed by @richabdill.com. Check it out: arxiv.org/abs/2505.11385
arxiv.org
Compendium Manager: a tool for coordination of workflow management instances for bulk data processing in Python
Compendium Manager is a command-line tool written in Python to automate the provisioning, launch, and evaluation of bioinformatics pipelines. Although workflow management tools such as Snakemake and N...
1164
Reposted by Dan Sprockett
Nature Microbiology @natmicrobiol.nature.com · 14/05/2025
#NatureMicroPicks Microbial integrons in focus 🦠🧬 Two studies showing microbial integrons encoding phage defense systems #MicroSky www.science.org/doi/10.1126/... www.science.org/doi/10.1126/...
science.org
Mobile integrons encode phage defense systems
Integrons are bacterial genetic elements that capture, stockpile, and modulate the expression of genes encoded in integron cassettes. Mobile integrons (MIs) are borne on plasmids, acting as a vehicle ...
13914
Dan Sprockett @danielsprockett.bsky.social · 14/05/2025
A very open-ended question: Has anyone developed a lab policy for for AI use in their biomedical research that they'd be willing to share? Have people even thought about defining what should be allowed/encouraged, and what should be outright banned? Please share with anyone who might have ideas.
240
Reposted by Dan Sprockett
Nichole Ginnan 🦠 @botanichole.bsky.social · 13/05/2025
🔬 New Perspective in mBio (@asm.org)! We call for a shift from disease surveillance to microbial stewardship, and highlight testable, cross-system hypotheses to unravel central rules of microbial life–spanning multiple scales, taxa, and environments. 🦠🌎 journals.asm.org/doi/10.1128/...
journals.asm.org
Ecologically expanding the One Health framework to unify the microbiome sciences | mBio
Microbiome research rapidly expanded in the last two decades, with nearly 200,000 peer-reviewed articles that use the word “microbiome” and significant microbial lineage discoveries reshaping the evol...
0118
Dan Sprockett @danielsprockett.bsky.social · 10/05/2025
From 2 of my favorite scientists: “We are deeply concerned about the current funding climate. When we think about new professors or postdocs starting their own labs, we worry that funding challenges could easily result in losing a generation of talented scientists.” news.stanford.edu/stories/2025...
news.stanford.edu
‘We can change diet to generate a healthier microbiome and a healthy individual’
Microbiologists Justin and Erica Sonnenburg are working to understand the complex microbial community that resides within the human gut and its potential for helping people live healthier, longer live...
075
Reposted by Dan Sprockett
Tami Lieberman @contaminatedsci.bsky.social · 01/05/2025
Do people in the same household share strains when they have the same species? How many cells transmit when a strain is shared? Can strain composition be dynamic when species composition is stable? We answer these and related questions for the facial skin microbiome in our latest paper. 🧵[1/10]
414067
Dan Sprockett @danielsprockett.bsky.social · 29/04/2025
This is exciting! Top reporting on Science, Biotech, Health Policy, and Public Health news. Wake Forest University School of Medicine affiliates can access @statnews.com for the next 2 weeks! Visit www.statnews.com/register/ & enter a valid @wakehealth.edu email address @wakeforest.bsky.social
statnews.com
Register
Register for your free STAT account.
000
Dan Sprockett @danielsprockett.bsky.social · 31/03/2025
WOW -- this is awesome:
011
Dan Sprockett @danielsprockett.bsky.social · 19/03/2025
"...creativity in science, as in the arts, cannot be organized."
a screenshot of an essay on creativity in science by Nobel Laureate Max Perutz, from the Preface to "I Wish I’d Made You Angry Earlier".
020
Dan Sprockett @danielsprockett.bsky.social · 14/03/2025
Are Microbiomes Contagious? Check out this awesome video on the social #microbiome. asm.org/Videos/Are-M... @asm.org
asm.org
Are Microbiomes Contagious? Microbial Minutes
ASM is a nonprofit professional society that publishes scientific journals and advances microbiology through advocacy, global health and diversity in STEM programs.
050
Dan Sprockett @danielsprockett.bsky.social · 27/02/2025
This is such a cool finding...
020
Dan Sprockett @danielsprockett.bsky.social · 17/01/2025
I’m excited to share that I’ll be starting a new position as an Assistant Professor at @wakeforest.bsky.social School of Medicine! The Sprockett Lab will focus on understanding the assembly, transmission, and evolution of the microbiome, and how these forces impact host health and physiology.
1100
Reposted by Dan Sprockett
Anna Dewar @annadewar.bsky.social · 08/01/2025
Our review is out in Nature Reviews Genetics! rdcu.be/d5AY2 We show how phylogeny-based methods can resolve the problem of non-independence in genomic datasets. These methods must be considered an essential part of the comparative genomics toolkit. @lauriebelch.bsky.social @stuwest.bsky.social
rdcu.be
A phylogenetic approach to comparative genomics
Nature Reviews Genetics - Controlling for phylogeny is essential in comparative genomics studies, because species, genomes and genes are not independent data points within statistical tests. The...
519494
Dan Sprockett @danielsprockett.bsky.social · 03/01/2025
More cool strain-level findings from @mattolm.bsky.social -- kind of unbelievable that this hadn't been done yet! "Metagenomic immunoglobulin sequencing reveals IgA coating of microbial strains in the healthy human gut" www.nature.com/articles/s41...
nature.com
Metagenomic immunoglobulin sequencing reveals IgA coating of microbial strains in the healthy human gut - Nature Microbiology
Metagenomic immunoglobulin sequencing (MIg-seq) uncovered patterns of IgA antibody binding of bacterial strains in the healthy human gut microbiome.
0124
Dan Sprockett @danielsprockett.bsky.social · 03/01/2025
I have a New Years Day tradition of closing all of the open tabs/windows on my phone and computer, and then clearing out all of the old emails and papers that I've been meaning to read. It's a small but meaningful way to wipe the slate clean, and start the new year feeling mentally refreshed.
010
Dan Sprockett @danielsprockett.bsky.social · 16/10/2023
MICROBIOME DATA ANALYSIS WORKSHOP AT CORNELL UNIVERSITY Nov 6th, 2023 10AM – noon, Corson-Mudd Hall, Room A409 Topics Include: - Standardized Workflows for Metagenomic Analysis - Metadata Management - F.A.I.R. Data Use Pre-Register Here: tinyurl.com/cornellmicrobiome #microsky 🦠 🧫
030
Dan Sprockett @danielsprockett.bsky.social · 15/10/2023
As stressful and uncertain as it is to be on the faculty job market, I have REALLY been enjoying having the opportunity to read dozens upon dozens of departmental and lab websites (not to mention papers I've overlooked ) from all over the world. Everywhere people are doing such fascinating work!!
120
Dan Sprockett @danielsprockett.bsky.social · 03/10/2023
Just mindlessly went to the "applications" folder on my computer and wondered why my faculty applications weren't there. I could probably use some more sleep.
020
Dan Sprockett @danielsprockett.bsky.social · 28/09/2023
For the second time this year, I have 2 papers published on consecutive days. Feeling very fortunate to be a part of this incredible research team!
320
Dan Sprockett @danielsprockett.bsky.social · 18/09/2023
One unexpectedly difficult part of going on the faculty job market is continually falling in love with various departments as you apply, knowing that you'll never join the vast majority of them.
130