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danielschraivogel.bsky.social

@danielschraivogel.bsky.social
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Reposted by @danielschraivogel.bsky.social
Camilla Ciolli Mattioli @cciollimattioli.bsky.social · 31/07/2026
Preprint alert! Work from my postdoc in the lab of @roi1avraham.bsky.social In a collaboration with @danielschraivogel.bsky.social and Lars Steinmetz www.biorxiv.org/content/10.6...
biorxiv.org
Image-based transposon screening reveals a flavin reductase that restrains intracellular Salmonella replication in macrophages
Intracellular bacterial pathogens can survive and replicate within host cells, yet an isogenic population follows divergent fates: some bacteria are killed, some arrest growth, and others replicate to...
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Reposted by @danielschraivogel.bsky.social
Nature Protocols @natprot.nature.com · 26/05/2026
New Article! Targeted single-cell RNA and perturbation sequencing with TAP-seq
dlvr.it
Targeted single-cell RNA and perturbation sequencing with TAP-seq
Nature Protocols, Published online: 26 May 2026; doi:10.1038/s41596-026-01367-5TAP-seq is a targeted single-cell RNA-sequencing method that enriches for specified genes of interest, enabling the sensitive and inexpensive detection of CRISPR perturbation effects.
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Reposted by @danielschraivogel.bsky.social
Stegle Lab @steglelab.bsky.social · 12/03/2026
How do immune disease-relevant variants rewire gene regulation in CD4+ T cells? In a collaboration led by Daniel Schraivogel and Lars Steinmetz at @embl.org, we combined two large-scale CRISPRi screens (4.1M cells) to map the downstream cascades of thousands of SNPs.
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danielschraivogel.bsky.social @danielschraivogel.bsky.social · 12/03/2026
Very proud to see this work out on bioRxiv. Using genome-scale TAP/Perturb-seq we mapped the function of immune-disease variants to target genes and regulatory cascades. Have a look at the 🧵from @anniquec.bsky.social for more info!
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Reposted by @danielschraivogel.bsky.social
EMBL @embl.org · 27/11/2025
Anthony A. Hyman will become EMBL’s next Director General. He joins EMBL from @mpi-cbg.de in Dresden. He is also Professor of Molecular Biology @tudresden.bsky.social, and was a group leader at EMBL Heidelberg from 1993 to 1999. www.embl.org/news/people-...
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Reposted by @danielschraivogel.bsky.social
Eileen Furlong @eileen-furlong.bsky.social · 30/07/2025
To all post-docs: The Genome Biology dept ‪@embl.org has an Independent faculty position. Fantastic place to set up your lab –great package: core funding, fantastic Ph.D. students, cutting edge core facilities & great colleagues. Closing date Sept 19th embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
embl.wd103.myworkdayjobs.com
Group Leader - Genome Biology Unit
Are you ready to lead groundbreaking research in Genome Biology? Join us at EMBL! We are seeking a motivated scientist to lead an independent research group addressing exciting and original biological...
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Reposted by @danielschraivogel.bsky.social
Typas Lab @typaslab.bsky.social · 30/07/2025
Ready to lead pioneering research that bridges systems-level investigations of biological systems to molecular mechanism? The EMBL Molecular Systems Biology Unit in Heidelberg is hiring a Group Leader!
embl.wd103.myworkdayjobs.com
Group Leader – Molecular Systems Biology Unit
Are you ready to lead groundbreaking research in Molecular Systems Biology? Join us at EMBL! We are seeking a motivated scientist to lead an independent research group, addressing original biological ...
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Reposted by @danielschraivogel.bsky.social
Annique Claringbould @anniquec.bsky.social · 26/05/2025
SUM-seq is now out 🤩 See Mikael's thread below for paper highlights
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Reposted by @danielschraivogel.bsky.social
Lars Velten @larsplus.bsky.social · 08/05/2025
Out in Cell @cp-cell.bsky.social: Design principles of cell-state-specific enhancers in hematopoiesis 🧬🩸 screen of fully synthetic enhancers in blood progenitors 🤖 AI that creates new cell state specific enhancers 🔍 negative synergies between TFs lead to specificity! www.cell.com/cell/fulltex... 🧵
cell.com
Design principles of cell-state-specific enhancers in hematopoiesis
Screen of minimalistic enhancers in blood progenitor cells demonstrates widespread dual activator-repressor function of transcription factors (TFs) and enables the model-guided design of cell-state-sp...
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Reposted by @danielschraivogel.bsky.social
Michael Montgomery @michaeltmont.bsky.social · 17/04/2025
I am elated to share that our manuscript describing Variant-EFFECTS, a high-throughput technology we developed to precisely and quantitatively measure the effects of CRISPR-mediated edits on gene expression, is now published at @cellpress.bsky.social: authors.elsevier.com/c/1kxgiL7PXu...
authors.elsevier.com
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Reposted by @danielschraivogel.bsky.social
Leopold Parts @leopoldparts.bsky.social · 10/02/2025
We're hiring to expand on the work to understand the human genome by engineering it! lnkd.in/da-gitNc
lnkd.in
Wellcome Sanger Institute hiring Postdoctoral Fellow | Generative and Synthetic Genomics in Hinxton, England, United Kingdom | LinkedIn
Posted 2:51:51 PM. Do you want to help us improve human health and understand life on Earth? Make your mark by shaping…See this and similar jobs on LinkedIn.
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Reposted by @danielschraivogel.bsky.social
Eric Topol @erictopol.bsky.social · 31/01/2025
On the holy grail of biology "The A.I. virtual cell (AIVC) has the potential to revolutionize the scientific process, leading to future breakthroughs in biomedical research, personalized medicine, drug discovery, cell engineering,& programmable biology” @science.org www.science.org/doi/10.1126/...
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Reposted by @danielschraivogel.bsky.social
Leopold Parts @leopoldparts.bsky.social · 31/01/2025
We're delighted to share our work on scrambling the human genome using prime editing, repetitive elements, and recombinases in @science.org , led by @jonaskoeppel.bsky.social , @f-raphael.bsky.social , with @proftomellis.bsky.social and George Church. www.science.org/doi/10.1126/...
science.org
Randomizing the human genome by engineering recombination between repeat elements
We lack tools to edit DNA sequences at scales necessary to study 99% of the human genome that is noncoding. To address this gap, we applied CRISPR prime editing to insert recombination handles into re...
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Reposted by @danielschraivogel.bsky.social
Jonathan Pritchard @jkpritch.bsky.social · 26/01/2025
Modern GWAS can identify 1000s of significant hits but it can be hard to turn this into biological insight. What key cellular functions link genetic variation to disease? I'm very excited to present our new work combining associations and Perturb-seq to build interpretable causal graphs! A 🧵
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Reposted by @danielschraivogel.bsky.social
Fabian Theis @fabiantheis.bsky.social · 22/01/2025
Excited to see Moscot (moscot-tools.org) published in @Nature! We scaled Optimal Transport (OT) in single-cell genomics & added multimodality together with spatiotemporal trajectory inference, finding exciting new biology in the pancreas! 🚀 Read at www.nature.com/articles/s41...
nature.com
Mapping cells through time and space with moscot - Nature
Moscot is an optimal transport approach that overcomes current limitations of similar methods to enable multimodal, scalable and consistent single-cell analyses of datasets across spatial and temporal...
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Reposted by @danielschraivogel.bsky.social
Leopold Parts @leopoldparts.bsky.social · 15/01/2025
We are happy to share our enhancer scramble story, a strategy to create hundreds of stochastic deletions, inversions, and duplications within mammalian gene regulatory regions and associate these new architectures with gene expression levels 🧵 www.biorxiv.org/content/10.1...
Enhancer scrambling strategy
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