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Giovanni Ciriello

@ciriellolab.bsky.social
940 followers 297 following 34 posts
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Reposted by Giovanni Ciriello
Nature Methods @natmethods.nature.com · 04/06/2026
TADShop: a study benchmarking 43 computational methods for identifying topologically associating domains. @ciriellolab.bsky.social www.nature.com/articles/s41...
nature.com
TADShop: systematic benchmarking and identification of topologically associating domains - Nature Methods
This study benchmarks 43 computational methods for identifying topologically associating domains (TADs), presents a tool based on a consensus strategy that leads to improved performance, and releases ...
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Reposted by Giovanni Ciriello
fbm-unil.bsky.social @fbm-unil.bsky.social · 03/06/2026
🔥 2 recent papers to decode #chromatin #3D architecture in normal and malignant cells published by @ciriellolab.bsky.social in @natureportfolio.nature.com 🔹 HaploC-tools reveal haplotype-specific chromosome conformation and chromatin states @natcomms.nature.com www.nature.com/articles/s41...
nature.com
HaploC-tools reveal haplotype-specific chromosome conformation and chromatin states - Nature Communications
HaploC-tools infer and compare haplotype-specific chromosome 3D structures, copy number, boundaries, and compartments in >100 Hi-C datasets, revealing widespread haplotype-specific chromatin organi...
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Reposted by Giovanni Ciriello
Luca Magnani @magnanilab.bsky.social · 15/01/2026
I'm sure we are going to hear about his latest work on dormancy www.nature.com/articles/s43... and many other exciting and unpulished stories, in keeping with the spirit of this conference. We hope to see you all in Rimini in few months!
nature.com
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Reposted by Giovanni Ciriello
Luca Magnani @magnanilab.bsky.social · 15/01/2026
If tumour evolution is a movie, metastasis is the plot twist — and Joan is one of the people who taught us how the twist happens. His work has mapped the signals and cell states that help cancer cells travel, pause (dormancy), and restart 2/
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Luca Magnani @magnanilab.bsky.social · 15/01/2026
Allright folks, time for the first #TMFCE2026 speaker highlight meetings.embo.org/event/26-can.... Our keynote this year is arguably one of the most critical thinkers in cancer research: Joan Massague' www.mskcc.org/research/ski.... How to sum up his career and his current interest? 1/
meetings.embo.org
The Many Faces of Cancer Evolution
Cancer evolution is a multi-faceted process and a major clinical challenge. Indeed, tumors constantly change as they progress through multiple mechanisms, the understanding of which is critical to an…
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Giovanni Ciriello @ciriellolab.bsky.social · 14/01/2026
⏰ -133 days to "The Many Faces of Cancer Evolution" 😎 !! with Luca @magnanilab.bsky.social Celine Vallot and Samra @turajliclab.bsky.social We're getting ready on Rimini's beach ⛱️ waiting for you! @embo.org #cancer #conference Register Now or Regret it Later 👉 meetings.embo.org/event/26-can...
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Reposted by Giovanni Ciriello
James Bonfield @jbonfield.bsky.social · 15/09/2025
Heads up: ignore samtools dot org, similarly minimap2 dot com and likely others. It's owned by a known phishing site and while the binaries they offer look valid currently (but note they may be serving us different binaries to others), that could change. Ie: it's not us (Samtools team)! Be warned
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Reposted by Giovanni Ciriello
Giovanni Ciriello @ciriellolab.bsky.social · 09/09/2025
🚀 WE'RE BACK! "The Many Faces of Cancer Evolution" is coming back to Rimini on May 27-29, 2026! meetings.embo.org/event/26-can... Join me, Luca @magnanilab.bsky.social , Celine Vallot, and Samra @turajliclab.bsky.social for 3 days of amazing science on the beach! @embo.org meeting #cancer 👇👇
meetings.embo.org
The Many Faces of Cancer Evolution
Cancer evolution is a multi-faceted process and a major clinical challenge. Indeed, tumors constantly change as they progress through multiple mechanisms, the understanding of which is critical to an…
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Giovanni Ciriello @ciriellolab.bsky.social · 12/09/2025
Couldn’t have said it better.. innovation and education are pillars of a healthy and growing economy! Share and sign the petition @unil.bsky.social @fbm-unil.bsky.social
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Giovanni Ciriello @ciriellolab.bsky.social · 09/09/2025
🚀 WE'RE BACK! "The Many Faces of Cancer Evolution" is coming back to Rimini on May 27-29, 2026! meetings.embo.org/event/26-can... Join me, Luca @magnanilab.bsky.social , Celine Vallot, and Samra @turajliclab.bsky.social for 3 days of amazing science on the beach! @embo.org meeting #cancer 👇👇
meetings.embo.org
The Many Faces of Cancer Evolution
Cancer evolution is a multi-faceted process and a major clinical challenge. Indeed, tumors constantly change as they progress through multiple mechanisms, the understanding of which is critical to an…
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Giovanni Ciriello @ciriellolab.bsky.social · 07/08/2025
Congratulations to Zoltan @zkutalik.bsky.social , Robin @rjhfmstr.bsky.social and the whole team for this fantastic work out today in ‪@nature.com 👍 ‬ www.nature.com/articles/s41... Your parents' genome matters more than you think 😉https://www.unil.ch/dbc/en/home.html @fbm-unil.bsky.social
nature.com
Parent-of-origin effects on complex traits in up to 236,781 individuals - Nature
A novel multistep strategy reveals how parent-of-origin effects shape complex traits in large-scale biobanks.
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Reposted by Giovanni Ciriello
Adeel Ahmed @adeel-ahmed.bsky.social · 28/07/2025
Just like food - junk content and mental obesity will hit the most vulnerable the hardest. In such an environment, we must promote independent thought, nuanced discourse, and sustained engagement with any literature as ever more important skills in the future - starting from primary education. 🧪
nytimes.com
Opinion | Thinking Is Becoming a Luxury Good
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Giovanni Ciriello @ciriellolab.bsky.social · 15/07/2025
🔥 18-19/9/25 🔥 Computational Biology Symposium in Lausanne! Meet the speakers: Sonja Lehtinen @sonjalehtinen.bsky.social @unil.bsky.social @fbm-unil.bsky.social Sonja uses #math #modeling to study the #ecology and #evolution of bacterial populations and #antibiotic #resistance
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Giovanni Ciriello @ciriellolab.bsky.social · 01/07/2025
Congratulations @elisaoricchio.bsky.social Andy Oates, Nadine Vastenhouw and all the new #EMBOMembers2025 !
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Giovanni Ciriello @ciriellolab.bsky.social · 30/06/2025
🔥 18-19/9/25 🔥 Computational Biology Symposium in Lausanne! Meet the speakers: Helene Morlon www.phyloeco.bio.ens.psl.eu of the Ecole Normale Supérieure #Paris Helene's research combines #mathematics, #bioinformatics and fieldwork to study #macroevolution,  #ecology, and #conservation
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Itai Yanai @itaiyanai.bsky.social · 26/06/2025
The situation we’re in now [with AI] is like someone who has a very cute tiger cub. A tiger cub can make a great pet but you better be sure that when it's grown up it never wants to kill you. – Geoffrey Hinton (Father of AI)
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Reposted by Giovanni Ciriello
Giovanni Ciriello @ciriellolab.bsky.social · 24/06/2025
🔥 REGISTER and SUBMIT an ABSTRACT 🔥 DEADLINE EXTENDED for abstract submission and thanks to generous funding, we cut the registration fees! you cannot miss it! cbiosymposium.unil.ch
cbiosymposium.unil.ch
Computational Biology Symposium
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Reposted by Giovanni Ciriello
Giovanni Ciriello @ciriellolab.bsky.social · 24/06/2025
🔥 18-19/9/25 🔥 Computational Biology Symposium in Lausanne! Meet the speakers: Marianna Rapsomaniki @marianna-raps.bsky.social ‬ @unil.bsky.social ‬develops innovative #AI #ML approaches tailored to complex and multi-modal #biomedical data with a focus in #cancer
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Giovanni Ciriello @ciriellolab.bsky.social · 10/06/2025
🔥 18-19/9/25 🔥 Computational Biology Symposium in #Lausanne! Meet the speakers: Anne-Florence Bitbol @epfl-ai-center.bsky.social‬ brings together #computationalbiology and theoretical #biophysics to study life at multiple scales! www.epfl.ch/labs/bitbol-...
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Giovanni Ciriello @ciriellolab.bsky.social · 03/06/2025
🔥 18-19/9/25 🔥 Computational Biology Symposium in Lausanne! Meet the speakers: Mo Lotfollahi @sangerinstitute.bsky.social is expert of cutting-edge #AI approaches to study #singlecell biology , #generativeAI, and #spatialbiology lotfollahi.com
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Giovanni Ciriello @ciriellolab.bsky.social · 27/05/2025
🔥 18-19/9/25 🔥 Computational Biology Symposium in Lausanne! Meet the speakers: Roser Vento-Tormo @sangerinstitute.bsky.social has pioneered computational approaches to study cell-cell interactions with the now legendary CellPhoneDB www.cellphonedb.org #bioinformatics #SingleCell #compbio
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Giovanni Ciriello @ciriellolab.bsky.social · 16/05/2025
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Reposted by Giovanni Ciriello
Giovanni Ciriello @ciriellolab.bsky.social · 13/05/2025
🔥 Computational Biology is Everywhere! CBIO Symposium in Lausanne cbiosymposium.unil.ch meet our KEYNOTE speaker Michael P. Brenner @harvard.edu brennergroup.seas.harvard.edu Michael's research uses applied mathematics and physics to address problems in life science, engineering, ... and cooking 😎
Michael P. Brenner
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Giovanni Ciriello @ciriellolab.bsky.social · 24/06/2025
🔥 18-19/9/25 🔥 Computational Biology Symposium in Lausanne! Meet the speakers: Marianna Rapsomaniki @marianna-raps.bsky.social ‬ @unil.bsky.social ‬develops innovative #AI #ML approaches tailored to complex and multi-modal #biomedical data with a focus in #cancer
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EACR - European Association for Cancer Research @helloeacr.bsky.social · 16/06/2025
Today is the start of #EACR2025! We’re excited to welcome a record number of participants from 66 countries to our Annual Congress here in Lisbon. Find the programme at 2025.eacr.org and don’t forget to use the hashtag!
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Reposted by Giovanni Ciriello
Nils Blüthgen @molsysbio.bsky.social · 13/06/2025
5 more days to submit abstracts for International Conference on Systems Biology #ICSB2024! Hope to meet you in Dublin!
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Reposted by Giovanni Ciriello
Francesco Iorio @francescoiorio.bsky.social · 11/06/2025
🧬 Excited to announce the 2nd Euro Cancer DepMap Symposium bringing together leading minds in functional genomics, cancer vulnerabilities, AI, CRISPR and anti-cancer target discovery.📍Join us in Milan for cutting-edge science, open discussion & collaboration. #EuroDepMap #CancerResearch #CRISPR
humantechnopole.it
2nd European Cancer Dependency Map Symposium - Human Technopole
The 2nd European Cancer Dependency Map Symposium is a scientific event open to the national and international scientific community working in computational genomics, pharmacogenomics, and therapeutic ...
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Giovanni Ciriello @ciriellolab.bsky.social · 10/06/2025
🔥 18-19/9/25 🔥 Computational Biology Symposium in #Lausanne! Meet the speakers: Anne-Florence Bitbol @epfl-ai-center.bsky.social‬ brings together #computationalbiology and theoretical #biophysics to study life at multiple scales! www.epfl.ch/labs/bitbol-...
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Giovanni Ciriello @ciriellolab.bsky.social · 03/06/2025
🔥 18-19/9/25 🔥 Computational Biology Symposium in Lausanne! Meet the speakers: Mo Lotfollahi @sangerinstitute.bsky.social is expert of cutting-edge #AI approaches to study #singlecell biology , #generativeAI, and #spatialbiology lotfollahi.com
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Itai Yanai @itaiyanai.bsky.social · 31/05/2025
90% of doing science is being open to new ideas.
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Zoltán Kutalik @zkutalik.bsky.social · 28/05/2025
Join us 18-19 September in Lausanne! *Abstract submission deadline (2 June) is approaching!*
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Zoltán Kutalik @zkutalik.bsky.social · 28/05/2025
Meet another speaker of the Computational Biology Symposium [cbiosymposium.unil.ch]: Blagoje Soskic [tinyurl.com/ybs82xuu]! He studies the genetic control of T – B cell interaction and antibody production with innovative combinations of experimental and computational approaches.
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Arianna Baggiolini @ariannabaggiolini.bsky.social · 29/05/2025
📣 Join us! Were looking for a PhD student to join our lab and work on human pluripotent stem cell (hPSC)-based models of the peripheral nervous system and disease. Come be part of our supportive and dynamic lab family in the beautiful Bellinzona, Southern Switzerland 🇨🇭☀️⛰️ ior.usi.ch/events-news/...
ior.usi.ch
PhD Student at the IOR - Institute of Oncology Research in Bellinzona, Switzerland
The Institute of Oncology Research (IOR) The IOR, affiliated with the Università della Svizzera italiana (USI), is located in a brand-new, high-tech research building that hosts more than 20 differ
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EACR - European Association for Cancer Research @helloeacr.bsky.social · 28/05/2025
This #EWAC2025 we're looking ahead to Europe's top cancer research event, the EACR 2025 Congress 🎉 Have you registered yet? It's happening from 16-19 June in Lisbon! Secure your spot: 2025.eacr.org
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Giovanni Ciriello @ciriellolab.bsky.social · 27/05/2025
🔥 18-19/9/25 🔥 Computational Biology Symposium in Lausanne! Meet the speakers: Roser Vento-Tormo @sangerinstitute.bsky.social has pioneered computational approaches to study cell-cell interactions with the now legendary CellPhoneDB www.cellphonedb.org #bioinformatics #SingleCell #compbio
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danapeer.bsky.social @danapeer.bsky.social · 26/05/2025
The Single-cell Analytics Innovation Lab @mskcancercenter.bsky.social is expanding and looking for ML-oriented computational biologists. Join our team based in NYC to work on cutting-edge single-cell & spatial transcriptomics methods in collaboration with leading research labs. bit.ly/4lTEr2t
bit.ly
Computational Biologist (Single-cell Genomics / ML) – Single-cell Analytics Innovation LabChaligne Lab Website
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Thiago Carvalho @cyrilpedia.bsky.social · 26/05/2025
'Whereas computer vision and language modelling rely on widely accepted ‘gold standard’ datasets, biomedicine often depends on proprietary data, institution-specific preprocessing, and heterogeneous evaluation criteria. As a result, performance claims risk being tethered to narrow context (...)'
nature.com
A benchmarking crisis in biomedical machine learning - Nature Medicine
A lack of standardized benchmarks is hindering progress and patient benefits
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Zoltán Kutalik @zkutalik.bsky.social · 16/05/2025
Join us to listen to and meet Andrea in Lausanne 18-19 September. Register and submit an abstract if you feel like sharing your work! cbiosymposium.unil.ch
cbiosymposium.unil.ch
Computational Biology Symposium
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Zoltán Kutalik @zkutalik.bsky.social · 16/05/2025
Meet another invited speaker to our Computational Biology Symposium in Lausanne [cbiosymposium.unil.ch]: Andrea Ganna www.atgu.mgh.harvard.edu/people/andre...
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Giovanni Ciriello @ciriellolab.bsky.social · 16/05/2025
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Giovanni Ciriello @ciriellolab.bsky.social · 13/05/2025
🔥 Computational Biology is Everywhere! CBIO Symposium in Lausanne cbiosymposium.unil.ch meet our KEYNOTE speaker Michael P. Brenner @harvard.edu brennergroup.seas.harvard.edu Michael's research uses applied mathematics and physics to address problems in life science, engineering, ... and cooking 😎
Michael P. Brenner
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Colm Ryan @colmr.bsky.social · 30/04/2025
speaker list is now expanded! sessions on cancer, evolution, metabolic disease, multi-omics, AI. speakers include @epetsalaki.bsky.social @ciriellolab.bsky.social @juliosaezrod.bsky.social @molsysbio.bsky.social @inesthiele.bsky.social @profjochen.bsky.social @renskevroomans.bsky.social +tons more
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Giovanni Ciriello @ciriellolab.bsky.social · 18/03/2025
After 6 (healthy) months of hiatus from social media, first post with a brand new conference announcement!! 🔥COMPUTATIONAL BIOLOGY IS EVERYWHERE! Join us in Lausanne for the first international Computational Biology Symposium! 18-19 September 2025 Registrations are OPEN! cbiosymposium.unil.ch
cbiosymposium.unil.ch
Computational Biology Symposium
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Mathieu Lupien @matlupien.bsky.social · 12/02/2025
🇨🇦 Fast-track your computational biology/bioinformatics career in cancer research! 🇨🇦 The Lupien Lab is looking to recruit a Postdoctoral Fellow in computational biology/bioinformatics ready for a challenge. Apply now: www.nature.com/naturecareer...
nature.com
Postdoctoral Fellow - Computational - Toronto (Region), Ontario (CA) job with Princess Margaret Cancer Centre | 12836915
We a seeking applications for a computational postdoctoral fellow with expertise in cancer epigenomics, chromatin biology, and data-driven research.
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Giovanni Ciriello @ciriellolab.bsky.social · 18/12/2024
Making news!😎 congrats guys!! www.rts.ch/info/science...
rts.ch
Des avatars pour personnaliser le traitement du lymphome
Des scientifiques de l'EPFL ont développé des "lymphomoïdes". Ces avatars de tumeurs devraient permettre de tester en laboratoire l'efficacité des traitements du lymphome et de mieux prédire les répon...
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Slim Mzoughi @sleemmz.bsky.social · 23/11/2024
go.bsky.app/QW8Ghu5
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Johanna Joyce @johannajoyce.bsky.social · 23/11/2024
Both #Cancer #Research starter packs are now completely full! ~300 researchers, oncologists, students, postdocs, patient advocates, and organizations supporting cancer research 🧪🔬⚕️ I hope you'll find these useful to build our community here Pack 1: go.bsky.app/FEoaJMc Pack 2: go.bsky.app/6EcjWNA
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Anna Obenauf @obenaufa.bsky.social · 20/11/2024
Pls share 🌟Join the IMP as a Group Leader We are 👀 for a colleague, ready to lead a groundbreaking research program. Enjoy generous funding, outstanding facilities & a vibrant scientific community in one of the world's most livable cities @impvienna.bsky.social 👉https://tinyurl.com/impgl2025
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Elisa Oricchio @elisaoricchio.bsky.social · 20/11/2024
Transitioning from unreliable ex-twitter platform to bluesky to keep a nice network and share science!
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Johanna Joyce @johannajoyce.bsky.social · 19/11/2024
Wonderful to join the annual #WomeninScience Switzerland event at Montreux Palace, including with some of the previous amazing speakers, and trainees from my lab 💜 Many thanks to Lola Grace, and all the organizing committee - and brava to Elisa Oricchio for an incredible, inspiring presentation 🙏🙏
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